16-813279-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813279
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813279
    reference: chr 16
allele count: 1
allele frequency: 5.01353654868144e-5
allele num: 19946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+3A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+3A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+3A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+3A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+3A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+3A>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
hgvs: c.129+3A>T
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-813281-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813281
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813281
    reference: chr 16
allele count: 1
allele frequency: 5.045917852457362e-5
allele num: 19818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+5G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+5G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+5G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+5G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+5G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+5G>C
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11915
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32097
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30472
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 6.75e1
  variant carriers: 0
hgvs: c.129+5G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

16-813287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813287
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813287
    reference: chr 16
allele count: 8
allele frequency: 4.022930705018606e-4
allele num: 19886
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+11C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+11C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+11C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+11C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+11C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+11C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11175
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

16-813290-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813290
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813289
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 19862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+18delG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+18delG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+18delG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+18delG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+18delG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+18delG
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4760
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: TG
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-813291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813291
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813291
    reference: chr 16
allele count: 4
allele frequency: 2.038528182652125e-4
allele num: 19622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+15G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+15G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+15G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+15G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+15G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+15G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33080
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9658
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30812
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

16-813292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813292
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813292
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 19638
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+16G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+16G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9628
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6544
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31000
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-813298-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813298
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813298
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 19628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+22C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+22C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+22C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+22C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+22C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+22C>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33535
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31371
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

16-813298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813298
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813298
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 19628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+22C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+22C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

16-813298-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813298
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813296
    reference: chr 16
allele count: 3
allele frequency: 1.528428775219075e-4
allele num: 19628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+23_129+24delAG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+23_129+24delAG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+23_129+24delAG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+23_129+24delAG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+23_129+24delAG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+23_129+24delAG
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CAG
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

16-813299-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813299
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813300
    reference: chr 16
allele count: 1
allele frequency: 5.099959200326397e-5
allele num: 19608
alternate allele: AG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+27dupG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+27dupG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+27dupG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+27dupG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+27dupG
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+27dupG
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31323
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4585
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-813306-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813306
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813306
    reference: chr 16
allele count: 1
allele frequency: 5.154639175257732e-5
allele num: 19400
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+30G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+30G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+30G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+30G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+30G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+30G>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

16-813306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813306
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813306
    reference: chr 16
allele count: 1
allele frequency: 5.154639175257732e-5
allele num: 19400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+30G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+30G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+30G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+30G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+30G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+30G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

16-813307-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813307
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813307
    reference: chr 16
allele count: 35
allele frequency: 1.800041143797572e-3
allele num: 19444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+31G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+31G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+31G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+31G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+31G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+31G>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 33342
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3800
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30308
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

16-813318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813318
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813318
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 19292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+42C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+42C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+42C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+42C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+42C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+42C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27992
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5728
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-813327-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813327
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813327
    reference: chr 16
allele count: 172
allele frequency: 8.933208683909837e-3
allele num: 19254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.129+51G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.129+51G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.129+51G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.129+51G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.129+51G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.129+51G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 7.5e0
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32430
  bin: 2.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 25150
  bin: 7.5e0
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8226
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 6.75e1
  variant carriers: 9
num of homozygotes: 4
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

16-813591-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813591
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813591
    reference: chr 16
allele count: 6
allele frequency: 5.49964252323599e-5
allele num: 109098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-51C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-51C>G
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13797
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15278
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-813597-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813597
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813597
    reference: chr 16
allele count: 2
allele frequency: 1.832810982203405e-5
allele num: 109122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-45C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-45C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-45C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-45C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-45C>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-45C>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

16-813601-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813601
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813601
    reference: chr 16
allele count: 1
allele frequency: 9.139932364500503e-6
allele num: 109410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-41G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-41G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-41G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-41G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-41G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-41G>C
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14499
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5499
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

16-813602-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813602
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813602
    reference: chr 16
allele count: 181
allele frequency: 1.653239801976581e-3
allele num: 109482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-40A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-40A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-40A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-40A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-40A>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-40A>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 21317
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14563
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 3.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5521
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27940
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4984
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 3
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-813619-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813619
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813619
    reference: chr 16
allele count: 2
allele frequency: 1.811364500878512e-5
allele num: 110414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-23T>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-23T>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-23T>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-23T>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-23T>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-23T>C
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5112
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5894
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-813621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813621
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813621
    reference: chr 16
allele count: 1
allele frequency: 9.055674285507299e-6
allele num: 110428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-21C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-21C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-21C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-21C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-21C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-21C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5054
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-813624-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813624
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813624
    reference: chr 16
allele count: 1
allele frequency: 9.038159107752934e-6
allele num: 110642
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-18C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-18C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-18C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-18C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-18C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-18C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5908
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 530
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4973
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-813630-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813630
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813630
    reference: chr 16
allele count: 1
allele frequency: 8.990541949868737e-6
allele num: 111228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-12C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-12C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-12C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-12C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-12C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-12C>G
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
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genotype quality: GenotypeQuality
  all individuals: 5986
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35639
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1876
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

16-813636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813636
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813636
    reference: chr 16
allele count: 1
allele frequency: 8.976177225643142e-6
allele num: 111406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-6C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-6C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-6C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-6C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-6C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-6C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6075
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
hgvs: c.130-6C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ

16-813639-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813639
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813639
    reference: chr 16
allele count: 3
allele frequency: 2.69000394533912e-5
allele num: 111524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-3C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17116
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4833
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
hgvs: c.130-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

16-813641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813641
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813641
    reference: chr 16
allele count: 5
allele frequency: 4.478681476173414e-5
allele num: 111640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-1G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26740
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17187
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 35577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
hgvs: c.130-1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

16-813641-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813641
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813641
    reference: chr 16
allele count: 2
allele frequency: 1.791472590469366e-5
allele num: 111640
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.130-1G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.130-1G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.130-1G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.130-1G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.130-1G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.130-1G>C
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 3.75e1
  variant carriers: 0
hgvs: c.130-1G>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

16-813648-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813648
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813648
    reference: chr 16
allele count: 1
allele frequency: 8.95094880057286e-6
allele num: 111720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.136G>A
  hgvsp: ENSP00000456702.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.136G>A
  hgvsp: ENSP00000456132.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.136G>A
  hgvsp: ENSP00000372313.3:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.136G>A
  hgvsp: ENSP00000456008.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.136G>A
  hgvsp: ENSP00000442965.2:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.136G>A
  hgvsp: ENSP00000458003.1:p.Ala46Thr
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala46Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

16-813649-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813649
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813649
    reference: chr 16
allele count: 2
allele frequency: 1.792885829030407e-5
allele num: 111552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.137C>T
  hgvsp: ENSP00000456008.1:p.Ala46Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.137C>T
  hgvsp: ENSP00000456702.1:p.Ala46Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.137C>T
  hgvsp: ENSP00000372313.3:p.Ala46Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.137C>T
  hgvsp: ENSP00000458003.1:p.Ala46Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.137C>T
  hgvsp: ENSP00000442965.2:p.Ala46Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.137C>T
  hgvsp: ENSP00000456132.1:p.Ala46Val
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25928
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4910
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala46Val
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

16-813650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813650
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813650
    reference: chr 16
allele count: 19232
allele frequency: 1.706992349067154e-1
allele num: 112666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.138G>A
  hgvsp: ENST00000545450.2:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.138G>A
  hgvsp: ENST00000563651.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.138G>A
  hgvsp: ENST00000566549.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.138G>A
  hgvsp: ENST00000382862.3:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.138G>A
  hgvsp: ENST00000569566.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.138G>A
  hgvsp: ENST00000563941.1:c.138G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.75e1
  variant carriers: 1366
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 7.5e0
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 4.25e1
  variant carriers: 1930
genotype depth: GenotypeDepth
  all individuals: 16180
  bin: 2.75e1
  variant carriers: 2474
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.25e1
  variant carriers: 2713
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 3.75e1
  variant carriers: 2390
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 1.25e1
  variant carriers: 732
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 4.75e1
  variant carriers: 1412
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.25e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 5.75e1
  variant carriers: 568
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 5.25e1
  variant carriers: 957
genotype depth: GenotypeDepth
  all individuals: 20479
  bin: 2.25e1
  variant carriers: 1973
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 3.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 5.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 9.25e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 3.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 16444
  bin: 9.75e1
  variant carriers: 16236
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 6.75e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 65
hgvs: p.Ala46Ala
num of homozygotes: 1701
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum

16-813654-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813654
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813653
    reference: chr 16
allele count: 1
allele frequency: 8.983434546695893e-6
allele num: 111316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.143delT
  hgvsp: ENSP00000442965.2:p.Leu48ArgfsTer30
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.143delT
  hgvsp: ENSP00000458003.1:p.Leu48ArgfsTer30
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.143delT
  hgvsp: ENSP00000456008.1:p.Leu48ArgfsTer30
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.143delT
  hgvsp: ENSP00000456702.1:p.Leu48ArgfsTer30
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.143delT
  hgvsp: ENSP00000456132.1:p.Leu48ArgfsTer30
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.143delT
  hgvsp: ENSP00000372313.3:p.Leu48ArgfsTer30
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5705
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39650
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu48ArgfsTer30
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: CT
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

16-813659-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813659
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813659
    reference: chr 16
allele count: 9
allele frequency: 8.129934418529024e-5
allele num: 110702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.147C>T
  hgvsp: ENST00000569566.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.147C>T
  hgvsp: ENST00000563651.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.147C>T
  hgvsp: ENST00000566549.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.147C>T
  hgvsp: ENST00000545450.2:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.147C>T
  hgvsp: ENST00000382862.3:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.147C>T
  hgvsp: ENST00000563941.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22900
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21694
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 39340
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp49Asp
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-813662-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813662
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813662
    reference: chr 16
allele count: 1
allele frequency: 9.080507781995169e-6
allele num: 110126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.150A>C
  hgvsp: ENST00000563941.1:c.150A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.150A>C
  hgvsp: ENST00000569566.1:c.150A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.150A>C
  hgvsp: ENST00000382862.3:c.150A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.150A>C
  hgvsp: ENST00000563651.1:c.150A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.150A>C
  hgvsp: ENST00000566549.1:c.150A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.150A>C
  hgvsp: ENST00000545450.2:c.150A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly50Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

16-813666-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813666
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813666
    reference: chr 16
allele count: 1
allele frequency: 9.130252177565145e-6
allele num: 109526
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.154C>T
  hgvsp: ENST00000382862.3:c.154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.154C>T
  hgvsp: ENST00000563651.1:c.154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.154C>T
  hgvsp: ENST00000563941.1:c.154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.154C>T
  hgvsp: ENST00000569566.1:c.154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.154C>T
  hgvsp: ENST00000545450.2:c.154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.154C>T
  hgvsp: ENST00000566549.1:c.154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21837
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu52Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

16-813670-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813670
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813670
    reference: chr 16
allele count: 1
allele frequency: 9.200139842125601e-6
allele num: 108694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.158C>T
  hgvsp: ENSP00000456702.1:p.Ala53Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.158C>T
  hgvsp: ENSP00000458003.1:p.Ala53Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.158C>T
  hgvsp: ENSP00000372313.3:p.Ala53Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.158C>T
  hgvsp: ENSP00000456008.1:p.Ala53Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.158C>T
  hgvsp: ENSP00000456132.1:p.Ala53Val
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.158C>T
  hgvsp: ENSP00000442965.2:p.Ala53Val
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala53Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/16-813676-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813676
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813676
    reference: chr 16
allele count: 1
allele frequency: 9.361016980884803e-6
allele num: 106826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.164C>A
  hgvsp: ENSP00000458003.1:p.Pro55Gln
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.164C>A
  hgvsp: ENSP00000456132.1:p.Pro55Gln
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.164C>A
  hgvsp: ENSP00000372313.3:p.Pro55Gln
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.164C>A
  hgvsp: ENSP00000456008.1:p.Pro55Gln
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.164C>A
  hgvsp: ENSP00000442965.2:p.Pro55Gln
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.164C>A
  hgvsp: ENSP00000456702.1:p.Pro55Gln
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19743
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9802
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro55Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

16-813680-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813680
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813680
    reference: chr 16
allele count: 2
allele frequency: 1.895950250265433e-5
allele num: 105488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.168T>C
  hgvsp: ENST00000563941.1:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.168T>C
  hgvsp: ENST00000382862.3:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.168T>C
  hgvsp: ENST00000563651.1:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.168T>C
  hgvsp: ENST00000566549.1:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.168T>C
  hgvsp: ENST00000569566.1:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.168T>C
  hgvsp: ENST00000545450.2:c.168T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18681
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro56Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

16-813681-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813681
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813681
    reference: chr 16
allele count: 1
allele frequency: 9.511128019783147e-6
allele num: 105140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.169A>G
  hgvsp: ENSP00000458003.1:p.Asn57Asp
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.169A>G
  hgvsp: ENSP00000442965.2:p.Asn57Asp
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.169A>G
  hgvsp: ENSP00000372313.3:p.Asn57Asp
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.169A>G
  hgvsp: ENSP00000456132.1:p.Asn57Asp
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.169A>G
  hgvsp: ENSP00000456008.1:p.Asn57Asp
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.169A>G
  hgvsp: ENSP00000456702.1:p.Asn57Asp
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33072
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn57Asp
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

16-813690-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813690
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813690
    reference: chr 16
allele count: 13
allele frequency: 1.27759105293158e-4
allele num: 101754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.178A>G
  hgvsp: ENSP00000456132.1:p.Ser60Gly
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.178A>G
  hgvsp: ENSP00000456008.1:p.Ser60Gly
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.178A>G
  hgvsp: ENSP00000372313.3:p.Ser60Gly
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.178A>G
  hgvsp: ENSP00000442965.2:p.Ser60Gly
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.178A>G
  hgvsp: ENSP00000456702.1:p.Ser60Gly
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.178A>G
  hgvsp: ENSP00000458003.1:p.Ser60Gly
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16245
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15875
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11570
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Ser60Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

16-813691-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813691
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813691
    reference: chr 16
allele count: 1
allele frequency: 9.914733293674401e-6
allele num: 100860
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.179G>C
  hgvsp: ENSP00000372313.3:p.Ser60Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.179G>C
  hgvsp: ENSP00000456132.1:p.Ser60Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.179G>C
  hgvsp: ENSP00000456008.1:p.Ser60Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.179G>C
  hgvsp: ENSP00000458003.1:p.Ser60Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.179G>C
  hgvsp: ENSP00000442965.2:p.Ser60Thr
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.179G>C
  hgvsp: ENSP00000456702.1:p.Ser60Thr
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15957
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser60Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

16-813692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813692
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813692
    reference: chr 16
allele count: 19
allele frequency: 1.883612570635471e-4
allele num: 100870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.179+1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.179+1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.179+1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.179+1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.179+1G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.179+1G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12615
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15291
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15320
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16040
  bin: 2.25e1
  variant carriers: 0
hgvs: c.179+1G>A
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

16-813715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813715
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813715
    reference: chr 16
allele count: 8
allele frequency: 8.508103969030502e-5
allele num: 94028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.179+24C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.179+24C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.179+24C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.179+24C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.179+24C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.179+24C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20645
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4910
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

16-813728-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813728
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813728
    reference: chr 16
allele count: 1
allele frequency: 1.151569589350284e-5
allele num: 86838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.179+37C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.179+37C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.179+37C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.179+37C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.179+37C>G
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.179+37C>G
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3518
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8029
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-813730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813730
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813730
    reference: chr 16
allele count: 7
allele frequency: 8.147303242626691e-5
allele num: 85918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.179+39C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.179+39C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.179+39C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.179+39C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.179+39C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.179+39C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24423
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9840
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8032
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22701
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

16-813731-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813731
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813731
    reference: chr 16
allele count: 12
allele frequency: 1.437332311230356e-4
allele num: 83488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.179+40G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.179+40G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.179+40G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.179+40G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.179+40G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.179+40G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24307
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10251
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13578
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3958
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-813735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813735
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813735
    reference: chr 16
allele count: 3
allele frequency: 3.814852492370295e-5
allele num: 78640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.179+44G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.179+44G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.179+44G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.179+44G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.179+44G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.179+44G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22485
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15824
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11325
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8090
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6094
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5135
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

16-813741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813741
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813741
    reference: chr 16
allele count: 9
allele frequency: 1.207664644946594e-4
allele num: 74524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.179+50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.179+50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.179+50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.179+50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.179+50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.179+50C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21027
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10700
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3618
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

16-813742-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813742
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813742
    reference: chr 16
allele count: 12
allele frequency: 1.725178987319934e-4
allele num: 69558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.179+51G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.179+51G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.179+51G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.179+51G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.179+51G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.179+51G>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18377
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20720
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10492
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5820
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5038
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7946
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

16-813973-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813973
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813973
    reference: chr 16
allele count: 1
allele frequency: 1.024989237613005e-5
allele num: 97562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-50C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-50C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16265
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
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genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 702
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genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/16-813979-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813979
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813979
    reference: chr 16
allele count: 2
allele frequency: 2.051955513604465e-5
allele num: 97468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-44A>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-44A>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-44A>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-44A>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-44A>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-44A>C
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11465
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16221
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6672
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 11822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6006
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 489
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
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genotype quality: GenotypeQuality
  all individuals: 9891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4207
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

16-813980-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813980
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813980
    reference: chr 16
allele count: 11
allele frequency: 1.125596054274195e-4
allele num: 97726
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-43G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-43G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-43G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-43G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-43G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-43G>C
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12371
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16175
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4641
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6003
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

16-813980-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813980
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813980
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 97726
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-43G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-43G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-43G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-43G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-43G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-43G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6003
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4641
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

16-813985-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813985
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813985
    reference: chr 16
allele count: 2
allele frequency: 2.041649652919559e-5
allele num: 97960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-38G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-38G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-38G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-38G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-38G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-38G>C
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10745
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15992
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6584
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4608
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10341
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

16-813989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813989
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813989
    reference: chr 16
allele count: 4
allele frequency: 4.089812277616457e-5
allele num: 97804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-34C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-34C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-34C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-34C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-34C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-34C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15806
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5754
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6523
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 10236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

16-813990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813990
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813990
    reference: chr 16
allele count: 2
allele frequency: 2.037033264753214e-5
allele num: 98182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-33G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-33G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-33G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-33G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-33G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-33G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15514
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9424
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10507
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

16-813992-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813992
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813992
    reference: chr 16
allele count: 2
allele frequency: 2.027780594139714e-5
allele num: 98630
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-31T>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-31T>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-31T>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-31T>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-31T>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-31T>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15331
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8593
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4458
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6327
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

16-813993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813993
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813993
    reference: chr 16
allele count: 1
allele frequency: 1.016136243547535e-5
allele num: 98412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-30C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-30C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-30C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-30C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-30C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-30C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5323
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4420
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 10610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

16-813994-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 813994
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 813994
    reference: chr 16
allele count: 36
allele frequency: 3.651041561023103e-4
allele num: 98602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-29G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-29G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-29G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-29G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-29G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-29G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14812
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17181
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4356
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6089
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10813
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5078
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

16-814000-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814000
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814000
    reference: chr 16
allele count: 1
allele frequency: 1.0079832271591e-5
allele num: 99208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-23G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-23G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-23G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-23G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-23G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-23G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18575
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4578
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

16-814000-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814000
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814000
    reference: chr 16
allele count: 2
allele frequency: 2.0159664543182e-5
allele num: 99208
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-23G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-23G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-23G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-23G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-23G>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-23G>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4578
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 19317
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genotype quality: GenotypeQuality
  all individuals: 3424
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 5885
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

16-814005-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814005
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814005
    reference: chr 16
allele count: 1
allele frequency: 9.99060882770196e-6
allele num: 100094
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-18G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-18G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-18G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-18G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-18G>C
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-18G>C
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10564
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21252
  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 548
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5549
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum

16-814009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814009
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814009
    reference: chr 16
allele count: 3
allele frequency: 2.977785718539694e-5
allele num: 100746
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-14G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-14G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-14G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-14G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-14G>A
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-14G>A
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11969
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
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genotype quality: GenotypeQuality
  all individuals: 5078
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 711
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3753
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

16-814011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814011
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814011
    reference: chr 16
allele count: 1
allele frequency: 9.819710122157193e-6
allele num: 101836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-12C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-12C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-12C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-12C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-12C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-12C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22169
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25067
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3970
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

16-814016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814016
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814016
    reference: chr 16
allele count: 1
allele frequency: 9.736339915099116e-6
allele num: 102708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-7C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-7C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-7C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-7C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-7C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-7C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4087
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25770
  bin: 6.25e1
  variant carriers: 0
hgvs: c.180-7C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

16-814020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814020
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814020
    reference: chr 16
allele count: 1
allele frequency: 9.665384392337283e-6
allele num: 103462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.180-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.180-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.180-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.180-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.180-3C>T
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.180-3C>T
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 2.75e1
  variant carriers: 0
hgvs: c.180-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

16-814024-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814024
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814024
    reference: chr 16
allele count: 1
allele frequency: 9.569011712470337e-6
allele num: 104504
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.181C>T
  hgvsp: ENSP00000372313.3:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.181C>T
  hgvsp: ENSP00000458003.1:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.181C>T
  hgvsp: ENSP00000456132.1:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.181C>T
  hgvsp: ENSP00000456702.1:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.181C>T
  hgvsp: ENSP00000456008.1:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.181C>T
  hgvsp: ENSP00000442965.2:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 7074
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9034
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu61Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

16-814029-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814029
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814029
    reference: chr 16
allele count: 1
allele frequency: 9.440374594063892e-6
allele num: 105928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.186C>T
  hgvsp: ENST00000569566.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.186C>T
  hgvsp: ENST00000545450.2:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.186C>T
  hgvsp: ENST00000566549.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.186C>T
  hgvsp: ENST00000563651.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.186C>T
  hgvsp: ENST00000563941.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.186C>T
  hgvsp: ENST00000382862.3:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8258
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser62Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

16-814031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814031
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814031
    reference: chr 16
allele count: 1
allele frequency: 9.399379640943698e-6
allele num: 106390
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.188C>T
  hgvsp: ENSP00000372313.3:p.Pro63Leu
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.188C>T
  hgvsp: ENSP00000456008.1:p.Pro63Leu
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.188C>T
  hgvsp: ENSP00000442965.2:p.Pro63Leu
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.188C>T
  hgvsp: ENSP00000456702.1:p.Pro63Leu
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.188C>T
  hgvsp: ENSP00000456132.1:p.Pro63Leu
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.188C>T
  hgvsp: ENSP00000458003.1:p.Pro63Leu
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7990
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro63Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-814033-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814033
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814033
    reference: chr 16
allele count: 5
allele frequency: 4.675431542331357e-5
allele num: 106942
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.190C>T
  hgvsp: ENSP00000456702.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.190C>T
  hgvsp: ENSP00000456132.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.190C>T
  hgvsp: ENSP00000456008.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.190C>T
  hgvsp: ENSP00000458003.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.190C>T
  hgvsp: ENSP00000372313.3:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.190C>T
  hgvsp: ENSP00000442965.2:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12134
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7674
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg64Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

16-814034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814034
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814034
    reference: chr 16
allele count: 3
allele frequency: 2.796420581655481e-5
allele num: 107280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.191G>A
  hgvsp: ENSP00000456132.1:p.Arg64His
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.191G>A
  hgvsp: ENSP00000456008.1:p.Arg64His
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.191G>A
  hgvsp: ENSP00000442965.2:p.Arg64His
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.191G>A
  hgvsp: ENSP00000372313.3:p.Arg64His
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.191G>A
  hgvsp: ENSP00000456702.1:p.Arg64His
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.191G>A
  hgvsp: ENSP00000458003.1:p.Arg64His
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg64His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

16-814037-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814037
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814037
    reference: chr 16
allele count: 2
allele frequency: 1.836952129027517e-5
allele num: 108876
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.194A>G
  hgvsp: ENSP00000458003.1:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.194A>G
  hgvsp: ENSP00000372313.3:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.194A>G
  hgvsp: ENSP00000442965.2:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.194A>G
  hgvsp: ENSP00000456132.1:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.194A>G
  hgvsp: ENSP00000456008.1:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.194A>G
  hgvsp: ENSP00000456702.1:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln65Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

16-814041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814041
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814041
    reference: chr 16
allele count: 2
allele frequency: 1.820068070545839e-5
allele num: 109886
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.198C>T
  hgvsp: ENST00000382862.3:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.198C>T
  hgvsp: ENST00000545450.2:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.198C>T
  hgvsp: ENST00000563941.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.198C>T
  hgvsp: ENST00000566549.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.198C>T
  hgvsp: ENST00000569566.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.198C>T
  hgvsp: ENST00000563651.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13153
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu66Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

16-814053-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 814053
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 814053
    reference: chr 16
allele count: 1
allele frequency: 8.912973724553461e-6
allele num: 112196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456008
  ensembl transcript: ENST00000563941
  gene symbol: MSLN
  hgvsc: ENST00000563941.1:c.210G>A
  hgvsp: ENST00000563941.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000442965
  ensembl transcript: ENST00000545450
  gene symbol: MSLN
  hgvsc: ENST00000545450.2:c.210G>A
  hgvsp: ENST00000545450.2:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456702
  ensembl transcript: ENST00000566549
  gene symbol: MSLN
  hgvsc: ENST00000566549.1:c.210G>A
  hgvsp: ENST00000566549.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000458003
  ensembl transcript: ENST00000569566
  gene symbol: MSLN
  hgvsc: ENST00000569566.1:c.210G>A
  hgvsp: ENST00000569566.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000456132
  ensembl transcript: ENST00000563651
  gene symbol: MSLN
  hgvsc: ENST00000563651.1:c.210G>A
  hgvsp: ENST00000563651.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000102854
  ensembl protein: ENSP00000372313
  ensembl transcript: ENST00000382862
  gene symbol: MSLN
  hgvsc: ENST00000382862.3:c.210G>A
  hgvsp: ENST00000382862.3:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7371
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro70Pro
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 10443
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30417
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.227596366314756e-4
allele num: 8146
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.64e0

DP
type: SiteQuality
SIO_000300: 4.23391e5

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.33e-1

MQ
type: SiteQuality
SIO_000300: 5.766e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
all individuals: 8852
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.201680672268908e-4
allele num: 2380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 4.17318e5

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.41e-2

QD
type: SiteQuality
SIO_000300: 1.437e1

VQSLOD
type: SiteQuality
SIO_000300: -4.993e-1

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.01419878296146e-3
allele num: 7888
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.510000000000001e-2

FS
type: SiteQuality
SIO_000300: 4.543e0

DP
type: SiteQuality
SIO_000300: 4.1425e5

VQSLOD
type: SiteQuality
SIO_000300: -1.519e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 1.527e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.153e1

DP
type: SiteQuality
SIO_000300: 4.09782e5

QD
type: SiteQuality
SIO_000300: 7.23e0

VQSLOD
type: SiteQuality
SIO_000300: -1.395e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.63e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
all individuals: 4554
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 419
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6404
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 639
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 1
allele frequency: 5.434782608695652e-3
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.180602006688963e-4
allele num: 2392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.968503937007874e-3
allele num: 508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.260398285858331e-4
allele num: 7934
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.75e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.758e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

DP
type: SiteQuality
SIO_000300: 4.02303e5

QD
type: SiteQuality
SIO_000300: 1.463e1

GenotypeQuality
all individuals: 565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4596
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.02229e5

VQSLOD
type: SiteQuality
SIO_000300: -2.027e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

QD
type: SiteQuality
SIO_000300: 1.655e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 9.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.395e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.97952e5

GenotypeQuality
all individuals: 1176
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

DP
type: SiteQuality
SIO_000300: 3.97952e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.395e-1

QD
type: SiteQuality
SIO_000300: 1.655e1

FS
type: SiteQuality
SIO_000300: 9.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

GenotypeQuality
all individuals: 6122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.783102143757881e-4
allele num: 7930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.97952e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.395e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.655e1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

FS
type: SiteQuality
SIO_000300: 9.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 273
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.263264274886306e-4
allele num: 7916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.96e-2

DP
type: SiteQuality
SIO_000300: 3.96824e5

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.102e0

MQ
type: SiteQuality
SIO_000300: 6.005e1

QD
type: SiteQuality
SIO_000300: 1.139e1

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.212299915754001e-4
allele num: 2374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.631e0

FS
type: SiteQuality
SIO_000300: 2.116e0

DP
type: SiteQuality
SIO_000300: 3.8616e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.55e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 9.28e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 7.26e0

GenotypeQuality
all individuals: 4400
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4030
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.269680040629761e-4
allele num: 7876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.116e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 3.8616e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.55e-2

QD
type: SiteQuality
SIO_000300: 7.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.631e0

MQRankSum
type: SiteQuality
SIO_000300: 9.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 662
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4415
bin: 6.25e1
variant carriers: 3

African
type: Population
allele count: 35
allele frequency: 1.463210702341137e-2
allele num: 2392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

FS
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.02e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.86482e5

GenotypeQuality
all individuals: 316
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 9.25e1
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GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.004e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.46e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.186e0

DP
type: SiteQuality
SIO_000300: 3.7623e5

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 2812
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 557
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2212
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 426
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 799
bin: 9.75e1
variant carriers: 174

GenotypeQuality
all individuals: 657
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 9

Latino
type: Population
allele count: 1
allele frequency: 2.314814814814815e-3
allele num: 432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

African
type: Population
allele count: 102
allele frequency: 4.271356783919598e-2
allele num: 2388
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 60
allele frequency: 7.782101167315175e-3
allele num: 7710
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.145329600407228e-3
allele num: 7858
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 1.208e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.98e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.406e1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

DP
type: SiteQuality
SIO_000300: 3.80159e5

GenotypeQuality
all individuals: 3466
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5371
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.829156758734224e-4
allele num: 10934
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.51020474593926e-5
allele num: 61442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12458
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.268e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.193e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

DP
type: SiteQuality
SIO_000300: 1.269384e6

FS
type: SiteQuality
SIO_000300: 8.693e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

GenotypeQuality
all individuals: 5395
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1818
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3261
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.254360843530331e-5
allele num: 61456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

QD
type: SiteQuality
SIO_000300: 1.137e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

DP
type: SiteQuality
SIO_000300: 1.290346e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-2

GenotypeQuality
all individuals: 2951
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4922
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26960
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.194457716196847e-4
allele num: 8372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.025e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.428e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.195e0

DP
type: SiteQuality
SIO_000300: 1.304702e6

GenotypeQuality
all individuals: 1834
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 427
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 559
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2002
bin: 9.75e1
variant carriers: 173

GenotypeQuality
all individuals: 1721
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.471457231442641e-4
allele num: 10966
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.946598855689765e-5
allele num: 12584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

African
type: Population
allele count: 174
allele frequency: 1.842439644218551e-2
allele num: 9444
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.17e0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

DP
type: SiteQuality
SIO_000300: 1.309054e6

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 433
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.226118656644192e-5
allele num: 61994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13008
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.472e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.369752e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34798
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.058201058201058e-4
allele num: 9450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11008
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.158e0

MQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.197e0

DP
type: SiteQuality
SIO_000300: 1.37495e6

FS
type: SiteQuality
SIO_000300: 4.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.41e-1

MQ
type: SiteQuality
SIO_000300: 5.723e1

QD
type: SiteQuality
SIO_000300: 2.858e1

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.186802753382388e-4
allele num: 8426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.492e-1

QD
type: SiteQuality
SIO_000300: 9.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.388e0

DP
type: SiteQuality
SIO_000300: 1.382446e6

FS
type: SiteQuality
SIO_000300: 2.003e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeQuality
all individuals: 4876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.405213270142181e-5
allele num: 13504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.809e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

VQSLOD
type: SiteQuality
SIO_000300: -1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

DP
type: SiteQuality
SIO_000300: 1.394201e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

QD
type: SiteQuality
SIO_000300: 1.916e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 615
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.606425702811245e-5
allele num: 62250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.399978e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.86e-1

QD
type: SiteQuality
SIO_000300: 1.016e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 310
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.176620076238882e-4
allele num: 9444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5766
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 1.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.57e-1

FS
type: SiteQuality
SIO_000300: 6.272e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

DP
type: SiteQuality
SIO_000300: 1.403153e6

VQSLOD
type: SiteQuality
SIO_000300: -1.441e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

GenotypeQuality
all individuals: 1172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6106
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.618468664061369e-4
allele num: 13818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.118e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 1.404876e6

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
all individuals: 4825
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1920
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.364625206904706e-4
allele num: 8458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.52e-1

DP
type: SiteQuality
SIO_000300: 1.404876e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

FS
type: SiteQuality
SIO_000300: 6.118e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
all individuals: 458
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34653
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.084302325581395e-5
allele num: 11008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e-1

QD
type: SiteQuality
SIO_000300: 1.55e1

FS
type: SiteQuality
SIO_000300: 1.515e0

DP
type: SiteQuality
SIO_000300: 1.40882e6

VQSLOD
type: SiteQuality
SIO_000300: 8.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.291e0

GenotypeQuality
all individuals: 543
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.173601147776183e-5
allele num: 13940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.605445671718469e-5
allele num: 62288
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

QD
type: SiteQuality
SIO_000300: 9.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.3252e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 1.41e6

VQSLOD
type: SiteQuality
SIO_000300: -1.856e0

GenotypeQuality
all individuals: 3957
bin: 2.25e1
variant carriers: 50

GenotypeQuality
all individuals: 27953
bin: 6.25e1
variant carriers: 116

GenotypeQuality
all individuals: 725
bin: 2.75e1
variant carriers: 47

GenotypeQuality
all individuals: 406
bin: 7.5e0
variant carriers: 16

GenotypeQuality
all individuals: 492
bin: 8.25e1
variant carriers: 152

GenotypeQuality
all individuals: 899
bin: 7.75e1
variant carriers: 141

GenotypeQuality
all individuals: 524
bin: 5.75e1
variant carriers: 82

GenotypeQuality
all individuals: 989
bin: 7.25e1
variant carriers: 129

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 137

Latino
type: Population
allele count: 1439
allele frequency: 1.305807622504537e-1
allele num: 11020
num of homozygotes: 89

South Asian
type: Population
allele count: 2305
allele frequency: 1.58724693568379e-1
allele num: 14522
num of homozygotes: 189

East Asian
type: Population
allele count: 2299
allele frequency: 2.7239336492891e-1
allele num: 8440
num of homozygotes: 292

African
type: Population
allele count: 691
allele frequency: 7.31526572094008e-2
allele num: 9446
num of homozygotes: 25

Other
type: Population
allele count: 141
allele frequency: 1.78030303030303e-1
allele num: 792
num of homozygotes: 16

European (Finnish)
type: Population
allele count: 938
allele frequency: 1.618357487922705e-1
allele num: 5796
num of homozygotes: 69

European (Non-Finnish)
type: Population
allele count: 11419
allele frequency: 1.822665602553871e-1
allele num: 62650
num of homozygotes: 1021

DP
type: SiteQuality
SIO_000300: 1.593432e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

FS
type: SiteQuality
SIO_000300: 1.103e0

QD
type: SiteQuality
SIO_000300: 1.288e1

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

GenotypeQuality
all individuals: 915
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.069976460517869e-4
allele num: 9346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14326
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.38941e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.188e0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

FS
type: SiteQuality
SIO_000300: 1.237e0

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

QD
type: SiteQuality
SIO_000300: 5.52e0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.13529469006455e-4
allele num: 61658
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.242144177449168e-5
allele num: 10820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.805054151624549e-4
allele num: 5540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.380891e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e-1

GenotypeQuality
all individuals: 482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.630523398010761e-5
allele num: 61330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.867e0

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

DP
type: SiteQuality
SIO_000300: 1.369265e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.258e0

MQ
type: SiteQuality
SIO_000300: 5.795e1

QD
type: SiteQuality
SIO_000300: 1.002e1

GenotypeQuality
all individuals: 403
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 607
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38098
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5859
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.366804046459348e-5
allele num: 10676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5456
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.824e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

DP
type: SiteQuality
SIO_000300: 1.361031e6

QD
type: SiteQuality
SIO_000300: 6.47e0

GenotypeQuality
all individuals: 570
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37803
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.650655310158133e-5
allele num: 60582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14086
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

DP
type: SiteQuality
SIO_000300: 1.347589e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.9e-1

QD
type: SiteQuality
SIO_000300: 6.45e0

VQSLOD
type: SiteQuality
SIO_000300: -1.817e0

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.678697330871244e-5
allele num: 59570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5222
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.373e0

DP
type: SiteQuality
SIO_000300: 1.309596e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 5.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

GenotypeQuality
all individuals: 684
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5050
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.396508389375722e-5
allele num: 58884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13816
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.794e0

DP
type: SiteQuality
SIO_000300: 1.281023e6

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 1.248e1

MQ
type: SiteQuality
SIO_000300: 5.836e1

GenotypeQuality
all individuals: 950
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11489
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.703809718530634e-5
allele num: 58692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13776
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.271439e6

MQRankSum
type: SiteQuality
SIO_000300: -1.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.716e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.703e0

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeQuality
all individuals: 1375
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2657
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15016
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 2.075980900975711e-4
allele num: 9634
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.960331557134399e-4
allele num: 13512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.056338028169014e-4
allele num: 56800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.06953642384106e-4
allele num: 4832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

FS
type: SiteQuality
SIO_000300: 7.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

DP
type: SiteQuality
SIO_000300: 1.187414e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.341e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

GenotypeQuality
all individuals: 900
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.449344457687723e-5
allele num: 13424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQ
type: SiteQuality
SIO_000300: 5.753e1

MQRankSum
type: SiteQuality
SIO_000300: -1.362e0

DP
type: SiteQuality
SIO_000300: 1.162094e6

QD
type: SiteQuality
SIO_000300: 1.114e1

FS
type: SiteQuality
SIO_000300: 1.808e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

GenotypeQuality
all individuals: 2904
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25730
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 675
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.086811352253756e-4
allele num: 4792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 3.198748933750356e-4
allele num: 56272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

FS
type: SiteQuality
SIO_000300: 7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

QD
type: SiteQuality
SIO_000300: 1.434e1

DP
type: SiteQuality
SIO_000300: 1.160643e6

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

GenotypeQuality
all individuals: 142
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17570
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 412
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4684
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.905124785673462e-5
allele num: 52490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7040
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.465334166146158e-4
allele num: 12808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4314
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.878e0

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

DP
type: SiteQuality
SIO_000300: 9.81328e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.87e-1

GenotypeQuality
all individuals: 335
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48314
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.308557969118032e-4
allele num: 7642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.156e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.558e0

DP
type: SiteQuality
SIO_000300: 8.19246e5

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.599e1

VQSLOD
type: SiteQuality
SIO_000300: -2.104e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.58e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 6167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
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GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
all individuals: 174
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variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.584786053882726e-4
allele num: 6310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3760
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.467511103799967e-4
allele num: 12158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.280092108017584e-5
allele num: 47770
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.643e0

MQ
type: SiteQuality
SIO_000300: 5.891e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: -1.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

DP
type: SiteQuality
SIO_000300: 8.10624e5

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 1.34e1

GenotypeQuality
all individuals: 7923
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
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GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5476
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.710278775440397e-4
allele num: 11694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.151740758273443e-4
allele num: 46474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.854e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

FS
type: SiteQuality
SIO_000300: 3.327e0

VQSLOD
type: SiteQuality
SIO_000300: -2.189e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

DP
type: SiteQuality
SIO_000300: 7.99784e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

GenotypeQuality
all individuals: 162
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18931
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.674273489035479e-4
allele num: 11218
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.126e0

QD
type: SiteQuality
SIO_000300: 1.655e1

DP
type: SiteQuality
SIO_000300: 7.64606e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.643e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 7098
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6056
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8292
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.432624113475177e-4
allele num: 6768
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.447806573041842e-4
allele num: 41442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.23e-2

MQ
type: SiteQuality
SIO_000300: 5.604e1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
SIO_000300: 7.45929e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.615e-1

FS
type: SiteQuality
SIO_000300: 1.855e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 13140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1801
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 8536
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 11
allele frequency: 2.192982456140351e-3
allele num: 5016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.57519571487433e-5
allele num: 38832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.422e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.031e0

MQ
type: SiteQuality
SIO_000300: 5.757e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 3.424e0

QD
type: SiteQuality
SIO_000300: 1.021e1

DP
type: SiteQuality
SIO_000300: 7.40446e5

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3480
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6711
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6074
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4584
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54164
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.366493577480186e-4
allele num: 7318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9518
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.592e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

FS
type: SiteQuality
SIO_000300: 2.963e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.55e0

MQRankSum
type: SiteQuality
SIO_000300: -2.267e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

DP
type: SiteQuality
SIO_000300: 9.86881e5

GenotypeQuality
all individuals: 478
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4630
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7308
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.26806999746386e-4
allele num: 7886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.848018923713779e-5
allele num: 54112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3948
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

QD
type: SiteQuality
SIO_000300: 1.426e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.330000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.105e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 9.9497e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

GenotypeQuality
all individuals: 1342
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2795
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6683
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.028846508539599e-4
allele num: 54218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

FS
type: SiteQuality
SIO_000300: 5.468e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

QD
type: SiteQuality
SIO_000300: 1.048e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 9.96857e5

GenotypeQuality
all individuals: 2976
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54218
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 1.048e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.468e0

DP
type: SiteQuality
SIO_000300: 9.96857e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

GenotypeQuality
all individuals: 14091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5919
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3996
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.415428167020524e-4
allele num: 14130
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.264e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

VQSLOD
type: SiteQuality
SIO_000300: -3.333e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.117e0

FS
type: SiteQuality
SIO_000300: 3.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 1.008512e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4568
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.680123652154712e-5
allele num: 54346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7330
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.418439716312057e-4
allele num: 14100
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.51e-1

QD
type: SiteQuality
SIO_000300: 8.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 1.016458e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

GenotypeQuality
all individuals: 5612
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6420
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.518257365902795e-4
allele num: 7942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14144
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.026035e6

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 9.06e0

GenotypeQuality
all individuals: 10667
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17114
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 972
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.650301149844862e-5
allele num: 54790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7378
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.203e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

FS
type: SiteQuality
SIO_000300: 4.361e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

DP
type: SiteQuality
SIO_000300: 1.033431e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.356483993488877e-4
allele num: 7372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.35e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

DP
type: SiteQuality
SIO_000300: 1.038413e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

GenotypeQuality
all individuals: 754
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18973
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 994
bin: 7.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

Latino
type: Population
allele count: 35
allele frequency: 3.642797668609492e-3
allele num: 9608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4026
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.253761283851555e-4
allele num: 7976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14184
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 1.048138e6

FS
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.108e1

GenotypeQuality
all individuals: 608
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
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variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14260
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.034554107179805e-4
allele num: 9666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

DP
type: SiteQuality
SIO_000300: 1.06917e6

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

FS
type: SiteQuality
SIO_000300: 6.465e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

QD
type: SiteQuality
SIO_000300: 9.49e0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 529
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.629764065335753e-5
allele num: 55100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14260
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.465e0

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

DP
type: SiteQuality
SIO_000300: 1.06917e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.69e-1

QD
type: SiteQuality
SIO_000300: 9.49e0

GenotypeQuality
all individuals: 1616
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
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variant carriers: 0

GenotypeQuality
all individuals: 4127
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.341921631776704e-4
allele num: 7452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4190
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.494e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.133e0

QD
type: SiteQuality
SIO_000300: 5.67e0

DP
type: SiteQuality
SIO_000300: 1.09332e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4286
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.941552131056504e-5
allele num: 14406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.022704029453876e-4
allele num: 9778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.788524824724567e-5
allele num: 55912
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.121171e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

QD
type: SiteQuality
SIO_000300: 1.141e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
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variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4384
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.206563706563707e-4
allele num: 8288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 1.139816e6

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.973e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2857
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9900
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.192179303767287e-4
allele num: 8388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.16431e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

FS
type: SiteQuality
SIO_000300: 2.187e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.657e0

QD
type: SiteQuality
SIO_000300: 5.6e0

VQSLOD
type: SiteQuality
SIO_000300: -1.306e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.300052002080083e-4
allele num: 7692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14628
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.62e-1

FS
type: SiteQuality
SIO_000300: 8.75e-1

DP
type: SiteQuality
SIO_000300: 1.184382e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.097e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 270
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GenotypeQuality
all individuals: 808
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57974
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.873617693522907e-5
allele num: 10128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14728
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.446e0

VQSLOD
type: SiteQuality
SIO_000300: -3.701e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

FS
type: SiteQuality
SIO_000300: 2.1451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.33e-1

DP
type: SiteQuality
SIO_000300: 1.205624e6

GenotypeQuality
all individuals: 723
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 276
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2497
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.703055281174427e-5
allele num: 58718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.173e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.237393e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

FS
type: SiteQuality
SIO_000300: 2.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

QD
type: SiteQuality
SIO_000300: 1.153e1

GenotypeQuality
all individuals: 134
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 277
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.695202576707917e-5
allele num: 58990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

MQRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
type: SiteQuality
SIO_000300: 1.247833e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32186
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4827
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.93012931866435e-4
allele num: 10362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8742
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.668444918644971e-5
allele num: 14996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.372567535664902e-5
allele num: 59302
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.259437e6

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.005e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 2.653e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.47e-1

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7318
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.139731023478459e-4
allele num: 8774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.363153292527074e-5
allele num: 59468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.93e-1

DP
type: SiteQuality
SIO_000300: 1.271976e6

QD
type: SiteQuality
SIO_000300: 9.67e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 1.833e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

GenotypeQuality
all individuals: 456
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.315539935678525e-5
allele num: 60322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10564
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.294979e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.986e-1

GenotypeQuality
all individuals: 36282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5998
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 441
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.23334977799704e-4
allele num: 8108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.643655489809336e-5
allele num: 60840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.205e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

FS
type: SiteQuality
SIO_000300: 6.854e0

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.311753e6

MQ
type: SiteQuality
SIO_000300: 6.0e1