19-6478848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478848
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478848
    reference: chr 19
allele count: 2
allele frequency: 1.744378739511923e-5
allele num: 114654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.180C>T
  hgvsp: ENST00000590867.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.251C>T
  hgvsp: ENSP00000466334.1:p.Ser84Leu
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.180C>T
  hgvsp: ENST00000590173.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.180C>T
  hgvsp: ENST00000590473.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.180C>T
  hgvsp: ENST00000588421.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.312C>T
  hgvsp: ENST00000381480.2:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.330C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.180C>T
  hgvsp: ENST00000543576.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.365C>T
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser84Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

19-6478857-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478857
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478857
    reference: chr 19
allele count: 1
allele frequency: 8.595495960116898e-6
allele num: 116340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.171G>A
  hgvsp: ENST00000590173.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.356G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.171G>A
  hgvsp: ENST00000543576.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.171G>A
  hgvsp: ENST00000590473.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.303G>A
  hgvsp: ENST00000381480.2:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.171G>A
  hgvsp: ENST00000588421.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.321G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.242G>A
  hgvsp: ENSP00000466334.1:p.Cys81Tyr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.171G>A
  hgvsp: ENST00000590867.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12068
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys81Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

19-6478863-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478863
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478863
    reference: chr 19
allele count: 2
allele frequency: 1.708905104499547e-5
allele num: 117034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165C>T
  hgvsp: ENST00000588421.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297C>T
  hgvsp: ENST00000381480.2:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165C>T
  hgvsp: ENST00000590473.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165C>T
  hgvsp: ENST00000590173.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165C>T
  hgvsp: ENST00000590867.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165C>T
  hgvsp: ENST00000543576.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236C>T
  hgvsp: ENSP00000466334.1:p.Ala79Val
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala79Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

19-6478867-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478867
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478867
    reference: chr 19
allele count: 1110
allele frequency: 9.438133460308822e-3
allele num: 117608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315-4A>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236-4A>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165-4A>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297-4A>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350-4A>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165-4A>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165-4A>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165-4A>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165-4A>C
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12648
  bin: 2.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 1.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 35033
  bin: 2.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.75e1
  variant carriers: 3
hgvs: c.297-4A>C
num of homozygotes: 52
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

19-6478878-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478878
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478878
    reference: chr 19
allele count: 16
allele frequency: 1.351374178617882e-4
allele num: 118398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165-15C>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350-15C>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165-15C>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165-15C>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236-15C>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165-15C>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165-15C>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315-15C>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297-15C>G
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13296
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34525
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 37083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

19-6478882-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478882
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478882
    reference: chr 19
allele count: 1
allele frequency: 8.429286713758282e-6
allele num: 118634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165-19C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297-19C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315-19C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165-19C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165-19C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236-19C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165-19C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165-19C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350-19C>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

19-6478883-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478883
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478883
    reference: chr 19
allele count: 2
allele frequency: 1.685573179159573e-5
allele num: 118654
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297-20C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315-20C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165-20C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165-20C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165-20C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236-20C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350-20C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165-20C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165-20C>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

19-6478889-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478889
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478889
    reference: chr 19
allele count: 6
allele frequency: 5.043796970359287e-5
allele num: 118958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236-26G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165-26G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297-26G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315-26G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165-26G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350-26G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165-26G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165-26G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165-26G>C
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33828
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

19-6478889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478889
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478889
    reference: chr 19
allele count: 5
allele frequency: 4.203164141966072e-5
allele num: 118958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236-26G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297-26G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165-26G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165-26G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165-26G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315-26G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165-26G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165-26G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350-26G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7438
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

19-6478897-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478897
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478897
    reference: chr 19
allele count: 0
allele frequency: 0.0e0
allele num: 119428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350-34G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

19-6478898-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478898
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478898
    reference: chr 19
allele count: 1
allele frequency: 8.369741709770836e-6
allele num: 119478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165-35G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165-35G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350-35G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297-35G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165-35G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236-35G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165-35G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165-35G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315-35G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3065
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

19-6478905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478905
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478905
    reference: chr 19
allele count: 9
allele frequency: 7.514779065495475e-5
allele num: 119764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.315-42G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.350-42G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.165-42G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.236-42G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.165-42G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.297-42G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.165-42G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.165-42G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.165-42G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33170
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15152
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

19-6478907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478907
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478907
    reference: chr 19
allele count: 1
allele frequency: 8.345016356232058e-6
allele num: 119832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+41G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+41G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+41G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+41G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+41G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+41G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+41G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+41G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+41G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6406
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

19-6478908-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478908
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478908
    reference: chr 19
allele count: 12
allele frequency: 1.00095090335819e-4
allele num: 119886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+40C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+40C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+40C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+40C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+40C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+40C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+40C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+40C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+40C>T
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

19-6478916-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478916
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478916
    reference: chr 19
allele count: 1
allele frequency: 8.324592511196577e-6
allele num: 120126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+32G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+32G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+32G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+32G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+32G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+32G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+32G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+32G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+32G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15670
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

19-6478918-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478918
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478918
    reference: chr 19
allele count: 2
allele frequency: 1.664391997603276e-5
allele num: 120164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+30T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+30T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+30T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+30T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+30T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+30T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+30T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+30T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+30T>C
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37812
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

19-6478919-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478919
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478919
    reference: chr 19
allele count: 1
allele frequency: 8.335556148306214e-6
allele num: 119968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+29A>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+29A>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+29A>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+29A>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+29A>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+29A>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+29A>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+29A>G
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+29A>G
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

19-6478919-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478919
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478920
    reference: chr 19
allele count: 3
allele frequency: 2.500666844491865e-5
allele num: 119968
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+28dupG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+28dupG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+28dupG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+28dupG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+28dupG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+28dupG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+28dupG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+28dupG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+28dupG
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

19-6478919-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478919
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478918
    reference: chr 19
allele count: 3
allele frequency: 2.500666844491865e-5
allele num: 119968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+28delG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+28delG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+28delG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+28delG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+28delG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+28delG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+28delG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+28delG
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+28delG
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32471
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: TC
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-6478920-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478920
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478920
    reference: chr 19
allele count: 1
allele frequency: 8.335834083558401e-6
allele num: 119964
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+28G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+28G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+28G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+28G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+28G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+28G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+28G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+28G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+28G>T
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

19-6478920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478920
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478920
    reference: chr 19
allele count: 2
allele frequency: 1.66716681671168e-5
allele num: 119964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+28G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+28G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+28G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+28G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+28G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8155
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

19-6478924-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478924
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478924
    reference: chr 19
allele count: 1
allele frequency: 8.315870006320061e-6
allele num: 120252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+24G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+24G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+24G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+24G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+24G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+24G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+24G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+24G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+24G>C
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

19-6478924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478924
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478924
    reference: chr 19
allele count: 1
allele frequency: 8.315870006320061e-6
allele num: 120252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+24G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+24G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+24G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+24G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+24G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+24G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+24G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+24G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+24G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37367
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/19-6478925-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478925
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478925
    reference: chr 19
allele count: 18
allele frequency: 1.49772844519146e-4
allele num: 120182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+23G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+23G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+23G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+23G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+23G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+23G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+23G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+23G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+23G>T
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10613
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23397
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

19-6478925-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478925
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478925
    reference: chr 19
allele count: 29365
allele frequency: 2.443377544058178e-1
allele num: 120182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+23G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+23G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+23G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+23G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+23G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+23G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+23G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+23G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+23G>C
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 633
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 10613
  bin: 2.75e1
  variant carriers: 989
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 5.25e1
  variant carriers: 2870
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.75e1
  variant carriers: 948
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.75e1
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.75e1
  variant carriers: 2416
genotype depth: GenotypeDepth
  all individuals: 19500
  bin: 2.25e1
  variant carriers: 407
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 4.25e1
  variant carriers: 3132
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 3.75e1
  variant carriers: 2553
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 420
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.25e1
  variant carriers: 1113
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 3.25e1
  variant carriers: 1734
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.25e1
  variant carriers: 1867
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 6.75e1
  variant carriers: 1519
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 4.75e1
  variant carriers: 3152
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 336
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 8.25e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 11
num of homozygotes: 4294
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS

19-6478925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478925
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478925
    reference: chr 19
allele count: 32
allele frequency: 2.662628347007039e-4
allele num: 120182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+23G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+23G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+23G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+23G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+23G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+23G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+23G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+23G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+23G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19500
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25169
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-6478933-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478933
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478933
    reference: chr 19
allele count: 1
allele frequency: 8.30357884248111e-6
allele num: 120430
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+15G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+15G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+15G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+15G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+15G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+15G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+15G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+15G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+15G>C
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

19-6478935-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478935
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478935
    reference: chr 19
allele count: 2
allele frequency: 1.660522732556209e-5
allele num: 120444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+13G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+13G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+13G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+13G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+13G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+13G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+13G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+13G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+13G>C
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

19-6478943-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478943
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478943
    reference: chr 19
allele count: 7
allele frequency: 5.811057612485472e-5
allele num: 120460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+5G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+5G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+5G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+5G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+5G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+5G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+5G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+5G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+5G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
hgvs: c.296+5G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

19-6478944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478944
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478944
    reference: chr 19
allele count: 7
allele frequency: 5.81192607230036e-5
allele num: 120442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+4C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+4C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+4C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+4C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+4C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+4C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+4C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+4C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+4C>T
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20246
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10921
  bin: 9.75e1
  variant carriers: 7
hgvs: c.296+4C>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

19-6478946-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478946
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478946
    reference: chr 19
allele count: 1
allele frequency: 8.30137304710199e-6
allele num: 120462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+2T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+2T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+2T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+2T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+2T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+2T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+2T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+2T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+2T>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10916
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: c.296+2T>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-6478947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478947
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478947
    reference: chr 19
allele count: 1
allele frequency: 8.299995020002988e-6
allele num: 120482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.314+1G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.349+1G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.164+1G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.164+1G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.164+1G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.164+1G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.164+1G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.235+1G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.296+1G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: c.296+1G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

19-6478963-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478963
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478963
    reference: chr 19
allele count: 2
allele frequency: 1.659695943703114e-5
allele num: 120504
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.149G>C
  hgvsp: ENSP00000466583.1:p.Cys50Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.299G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.149G>C
  hgvsp: ENSP00000467008.1:p.Cys50Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.149G>C
  hgvsp: ENSP00000465675.1:p.Cys50Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.281G>C
  hgvsp: ENSP00000370889.1:p.Cys94Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.220G>C
  hgvsp: ENSP00000466334.1:p.Val74Leu
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.334G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.149G>C
  hgvsp: ENSP00000437805.1:p.Cys50Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.149G>C
  hgvsp: ENSP00000466394.1:p.Cys50Ser
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys94Ser
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP

19-6478976-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478976
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478976
    reference: chr 19
allele count: 237
allele frequency: 1.967392748040908e-3
allele num: 120464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.136G>C
  hgvsp: ENSP00000465675.1:p.Gly46Arg
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.321G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.207G>C
  hgvsp: ENST00000586046.1:c.207G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.136G>C
  hgvsp: ENSP00000437805.1:p.Gly46Arg
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.268G>C
  hgvsp: ENSP00000370889.1:p.Gly90Arg
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.136G>C
  hgvsp: ENSP00000466583.1:p.Gly46Arg
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.136G>C
  hgvsp: ENSP00000466394.1:p.Gly46Arg
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.286G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.136G>C
  hgvsp: ENSP00000467008.1:p.Gly46Arg
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 13906
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 20281
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly90Arg
num of homozygotes: 3
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

19-6478976-CCGCCCGCAGGCGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478976
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478963
    reference: chr 19
allele count: 1
allele frequency: 8.301235223801302e-6
allele num: 120464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsp: ENSP00000466334.1:p.Ala65GlyfsTer59
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsp: ENSP00000467008.1:p.Cys41TrpfsTer23
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsp: ENSP00000437805.1:p.Cys41TrpfsTer23
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsp: ENSP00000466583.1:p.Cys41TrpfsTer23
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsp: ENSP00000370889.1:p.Cys85TrpfsTer23
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsp: ENSP00000465675.1:p.Cys41TrpfsTer23
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsp: ENSP00000466394.1:p.Cys41TrpfsTer23
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11040
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys85TrpfsTer23
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: CCGCCCGCAGGCGG
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

19-6478977-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478977
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478977
    reference: chr 19
allele count: 2
allele frequency: 1.660770929865644e-5
allele num: 120426
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.206G>C
  hgvsp: ENSP00000466334.1:p.Arg69Pro
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.135G>C
  hgvsp: ENST00000590867.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.135G>C
  hgvsp: ENST00000590473.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.267G>C
  hgvsp: ENST00000381480.2:c.267G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.135G>C
  hgvsp: ENST00000543576.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.320G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.135G>C
  hgvsp: ENST00000590173.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.135G>C
  hgvsp: ENST00000588421.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.285G>C
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg69Pro
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

19-6478977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478977
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478977
    reference: chr 19
allele count: 5
allele frequency: 4.151927324664109e-5
allele num: 120426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.206G>A
  hgvsp: ENSP00000466334.1:p.Arg69Gln
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.135G>A
  hgvsp: ENST00000590867.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.135G>A
  hgvsp: ENST00000543576.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.267G>A
  hgvsp: ENST00000381480.2:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.320G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.135G>A
  hgvsp: ENST00000588421.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.135G>A
  hgvsp: ENST00000590173.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.135G>A
  hgvsp: ENST00000590473.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.285G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7505
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg69Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

19-6478978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478978
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478978
    reference: chr 19
allele count: 145
allele frequency: 1.20393895614341e-3
allele num: 120438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.134C>T
  hgvsp: ENSP00000466394.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.284C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.134C>T
  hgvsp: ENSP00000465675.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.134C>T
  hgvsp: ENSP00000437805.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.134C>T
  hgvsp: ENSP00000466583.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.134C>T
  hgvsp: ENSP00000467008.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.266C>T
  hgvsp: ENSP00000370889.1:p.Ala89Val
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.205C>T
  hgvsp: ENSP00000466334.1:p.Arg69Trp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.319C>T
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8258
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20276
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala89Val
num of homozygotes: 1
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

19-6478980-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478980
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478980
    reference: chr 19
allele count: 1
allele frequency: 8.301648707433296e-6
allele num: 120458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.132G>A
  hgvsp: ENST00000588421.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.264G>A
  hgvsp: ENST00000381480.2:c.264G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.317G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.132G>A
  hgvsp: ENST00000590173.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.282G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.132G>A
  hgvsp: ENST00000590473.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.203G>A
  hgvsp: ENSP00000466334.1:p.Gly68Glu
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.132G>A
  hgvsp: ENST00000543576.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.132G>A
  hgvsp: ENST00000590867.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10884
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly68Glu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

19-6478982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478982
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478982
    reference: chr 19
allele count: 3
allele frequency: 2.490742739484914e-5
allele num: 120446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.315C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.130C>T
  hgvsp: ENSP00000437805.1:p.Arg44Trp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.130C>T
  hgvsp: ENSP00000466583.1:p.Arg44Trp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.130C>T
  hgvsp: ENSP00000467008.1:p.Arg44Trp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.130C>T
  hgvsp: ENSP00000466394.1:p.Arg44Trp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.280C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.262C>T
  hgvsp: ENSP00000370889.1:p.Arg88Trp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.130C>T
  hgvsp: ENSP00000465675.1:p.Arg44Trp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.201C>T
  hgvsp: ENST00000586046.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg88Trp
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

19-6478985-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478985
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478985
    reference: chr 19
allele count: 1
allele frequency: 8.29985724245543e-6
allele num: 120484
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.127C>T
  hgvsp: ENST00000543576.1:c.127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.127C>T
  hgvsp: ENST00000590867.1:c.127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.198C>T
  hgvsp: ENST00000586046.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.312C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.259C>T
  hgvsp: ENST00000381480.2:c.259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.127C>T
  hgvsp: ENST00000590173.1:c.127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.127C>T
  hgvsp: ENST00000590473.1:c.127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.277C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.127C>T
  hgvsp: ENST00000588421.1:c.127C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu87Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

19-6478987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478987
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478987
    reference: chr 19
allele count: 4
allele frequency: 3.320053120849933e-5
allele num: 120480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.125G>A
  hgvsp: ENSP00000437805.1:p.Arg42His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.125G>A
  hgvsp: ENSP00000466583.1:p.Arg42His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.257G>A
  hgvsp: ENSP00000370889.1:p.Arg86His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.196G>A
  hgvsp: ENSP00000466334.1:p.Ala66Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.125G>A
  hgvsp: ENSP00000467008.1:p.Arg42His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.125G>A
  hgvsp: ENSP00000465675.1:p.Arg42His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.310G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.275G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.125G>A
  hgvsp: ENSP00000466394.1:p.Arg42His
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg86His
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

19-6478988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478988
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478988
    reference: chr 19
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.195C>T
  hgvsp: ENST00000586046.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.124C>T
  hgvsp: ENSP00000467008.1:p.Arg42Cys
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.124C>T
  hgvsp: ENSP00000437805.1:p.Arg42Cys
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.124C>T
  hgvsp: ENSP00000466583.1:p.Arg42Cys
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.274C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.256C>T
  hgvsp: ENSP00000370889.1:p.Arg86Cys
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.309C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.124C>T
  hgvsp: ENSP00000466394.1:p.Arg42Cys
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.124C>T
  hgvsp: ENSP00000465675.1:p.Arg42Cys
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg86Cys
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/19-6478990-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478990
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478990
    reference: chr 19
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.193G>T
  hgvsp: ENSP00000466334.1:p.Ala65Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.122G>T
  hgvsp: ENSP00000466583.1:p.Cys41Phe
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.122G>T
  hgvsp: ENSP00000437805.1:p.Cys41Phe
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.254G>T
  hgvsp: ENSP00000370889.1:p.Cys85Phe
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.122G>T
  hgvsp: ENSP00000465675.1:p.Cys41Phe
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.122G>T
  hgvsp: ENSP00000467008.1:p.Cys41Phe
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.272G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.122G>T
  hgvsp: ENSP00000466394.1:p.Cys41Phe
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.307G>T
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys85Phe
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

19-6478991-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6478991
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6478991
    reference: chr 19
allele count: 36
allele frequency: 2.987006521630906e-4
allele num: 120522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.121T>A
  hgvsp: ENSP00000437805.1:p.Cys41Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.121T>A
  hgvsp: ENSP00000467008.1:p.Cys41Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.121T>A
  hgvsp: ENSP00000466394.1:p.Cys41Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.121T>A
  hgvsp: ENSP00000465675.1:p.Cys41Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.306T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.271T>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.121T>A
  hgvsp: ENSP00000466583.1:p.Cys41Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.253T>A
  hgvsp: ENSP00000370889.1:p.Cys85Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.192T>A
  hgvsp: ENST00000586046.1:c.192T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys85Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

19-6479003-TGCG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479003
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479000
    reference: chr 19
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.106_108delCGC
  hgvsp: ENSP00000466394.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.106_108delCGC
  hgvsp: ENSP00000466583.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.256_258delCGC
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.291_293delCGC
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.106_108delCGC
  hgvsp: ENSP00000437805.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.177_179delCGC
  hgvsp: ENSP00000466334.1:p.Ala60del
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.238_240delCGC
  hgvsp: ENSP00000370889.1:p.Arg80del
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.106_108delCGC
  hgvsp: ENSP00000465675.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.106_108delCGC
  hgvsp: ENSP00000467008.1:p.Arg36del
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg80del
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: TGCG
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

19-6479005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479005
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479005
    reference: chr 19
allele count: 9
allele frequency: 7.469127605895631e-5
allele num: 120496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.178G>A
  hgvsp: ENSP00000466334.1:p.Ala60Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.107G>A
  hgvsp: ENSP00000466583.1:p.Arg36His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.107G>A
  hgvsp: ENSP00000437805.1:p.Arg36His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.292G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.107G>A
  hgvsp: ENSP00000466394.1:p.Arg36His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.107G>A
  hgvsp: ENSP00000467008.1:p.Arg36His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.239G>A
  hgvsp: ENSP00000370889.1:p.Arg80His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.257G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.107G>A
  hgvsp: ENSP00000465675.1:p.Arg36His
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg80His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

19-6479009-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479009
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479008
    reference: chr 19
allele count: 1
allele frequency: 8.298479718515568e-6
allele num: 120504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.102delC
  hgvsp: ENSP00000465675.1:p.Asn35ThrfsTer33
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.102delC
  hgvsp: ENSP00000466583.1:p.Asn35ThrfsTer33
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.252delC
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.234delC
  hgvsp: ENSP00000370889.1:p.Asn79ThrfsTer33
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.173delC
  hgvsp: ENSP00000466334.1:p.Ala58GlufsTer70
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.102delC
  hgvsp: ENSP00000466394.1:p.Asn35ThrfsTer33
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.102delC
  hgvsp: ENSP00000467008.1:p.Asn35ThrfsTer33
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.102delC
  hgvsp: ENSP00000437805.1:p.Asn35ThrfsTer33
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.287delC
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn79ThrfsTer33
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: TG
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

19-6479011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479011
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479011
    reference: chr 19
allele count: 1
allele frequency: 8.29985724245543e-6
allele num: 120484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.101G>A
  hgvsp: ENSP00000437805.1:p.Gly34Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.101G>A
  hgvsp: ENSP00000467008.1:p.Gly34Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.101G>A
  hgvsp: ENSP00000466583.1:p.Gly34Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.172G>A
  hgvsp: ENSP00000466334.1:p.Ala58Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.233G>A
  hgvsp: ENSP00000370889.1:p.Gly78Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.101G>A
  hgvsp: ENSP00000466394.1:p.Gly34Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.286G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.251G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.101G>A
  hgvsp: ENSP00000465675.1:p.Gly34Asp
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly78Asp
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

19-6479012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479012
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479012
    reference: chr 19
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.232G>A
  hgvsp: ENSP00000370889.1:p.Gly78Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.100G>A
  hgvsp: ENSP00000437805.1:p.Gly34Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.100G>A
  hgvsp: ENSP00000467008.1:p.Gly34Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.171G>A
  hgvsp: ENST00000586046.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.100G>A
  hgvsp: ENSP00000466583.1:p.Gly34Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.285G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.100G>A
  hgvsp: ENSP00000465675.1:p.Gly34Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.100G>A
  hgvsp: ENSP00000466394.1:p.Gly34Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.250G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly78Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

19-6479013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479013
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479013
    reference: chr 19
allele count: 37
allele frequency: 3.071151100634151e-4
allele num: 120476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.99C>T
  hgvsp: ENST00000590473.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.99C>T
  hgvsp: ENST00000590867.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.170C>T
  hgvsp: ENSP00000466334.1:p.Pro57Leu
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.99C>T
  hgvsp: ENST00000588421.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.231C>T
  hgvsp: ENST00000381480.2:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.249C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.99C>T
  hgvsp: ENST00000590173.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.99C>T
  hgvsp: ENST00000543576.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.284C>T
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10892
  bin: 9.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro57Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

19-6479013-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479013
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479013
    reference: chr 19
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.249C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.99C>A
  hgvsp: ENST00000590867.1:c.99C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.99C>A
  hgvsp: ENST00000590473.1:c.99C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.231C>A
  hgvsp: ENST00000381480.2:c.231C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.99C>A
  hgvsp: ENST00000588421.1:c.99C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.284C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.99C>A
  hgvsp: ENST00000590173.1:c.99C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.99C>A
  hgvsp: ENST00000543576.1:c.99C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.170C>A
  hgvsp: ENSP00000466334.1:p.Pro57Gln
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10892
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7527
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro57Gln
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

19-6479014-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479014
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479014
    reference: chr 19
allele count: 1
allele frequency: 8.299995020002988e-6
allele num: 120482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.98C>A
  hgvsp: ENSP00000466394.1:p.Ala33Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.98C>A
  hgvsp: ENSP00000467008.1:p.Ala33Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.169C>A
  hgvsp: ENSP00000466334.1:p.Pro57Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.98C>A
  hgvsp: ENSP00000466583.1:p.Ala33Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.283C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.248C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.98C>A
  hgvsp: ENSP00000465675.1:p.Ala33Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.98C>A
  hgvsp: ENSP00000437805.1:p.Ala33Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.230C>A
  hgvsp: ENSP00000370889.1:p.Ala77Asp
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29483
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala77Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

19-6479016-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479016
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479016
    reference: chr 19
allele count: 1
allele frequency: 8.300270588821196e-6
allele num: 120478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.167T>C
  hgvsp: ENSP00000466334.1:p.Leu56Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.96T>C
  hgvsp: ENST00000543576.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.96T>C
  hgvsp: ENST00000590473.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.96T>C
  hgvsp: ENST00000590173.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.96T>C
  hgvsp: ENST00000590867.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.246T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.228T>C
  hgvsp: ENST00000381480.2:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.96T>C
  hgvsp: ENST00000588421.1:c.96T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.281T>C
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu56Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

19-6479025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479025
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479025
    reference: chr 19
allele count: 104
allele frequency: 8.63514837509756e-4
allele num: 120438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.237C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.87C>T
  hgvsp: ENST00000590173.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.158C>T
  hgvsp: ENSP00000466334.1:p.Ser53Leu
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.87C>T
  hgvsp: ENST00000590867.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.87C>T
  hgvsp: ENST00000543576.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.219C>T
  hgvsp: ENST00000381480.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.272C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.87C>T
  hgvsp: ENST00000590473.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.87C>T
  hgvsp: ENST00000588421.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20286
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14049
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser53Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

19-6479030-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479030
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479030
    reference: chr 19
allele count: 2
allele frequency: 1.660826094899603e-5
allele num: 120422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.82G>C
  hgvsp: ENSP00000466583.1:p.Ala28Pro
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.82G>C
  hgvsp: ENSP00000466394.1:p.Ala28Pro
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.82G>C
  hgvsp: ENSP00000437805.1:p.Ala28Pro
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.82G>C
  hgvsp: ENSP00000467008.1:p.Ala28Pro
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.153G>C
  hgvsp: ENST00000586046.1:c.153G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.214G>C
  hgvsp: ENSP00000370889.1:p.Ala72Pro
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.82G>C
  hgvsp: ENSP00000465675.1:p.Ala28Pro
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.232G>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.267G>C
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10895
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala72Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

19-6479030-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479030
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479030
    reference: chr 19
allele count: 1
allele frequency: 8.304130474498016e-6
allele num: 120422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.82G>A
  hgvsp: ENSP00000467008.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.82G>A
  hgvsp: ENSP00000465675.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.214G>A
  hgvsp: ENSP00000370889.1:p.Ala72Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.82G>A
  hgvsp: ENSP00000466394.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.232G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.82G>A
  hgvsp: ENSP00000466583.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.267G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.82G>A
  hgvsp: ENSP00000437805.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.153G>A
  hgvsp: ENST00000586046.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala72Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

19-6479031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479031
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479031
    reference: chr 19
allele count: 4
allele frequency: 3.321652189799206e-5
allele num: 120422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.152C>T
  hgvsp: ENSP00000466334.1:p.Ser51Leu
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.81C>T
  hgvsp: ENST00000590867.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.231C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.81C>T
  hgvsp: ENST00000590173.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.81C>T
  hgvsp: ENST00000590473.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.213C>T
  hgvsp: ENST00000381480.2:c.213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.266C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.81C>T
  hgvsp: ENST00000543576.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.81C>T
  hgvsp: ENST00000588421.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser51Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

19-6479046-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479046
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479046
    reference: chr 19
allele count: 1
allele frequency: 8.332222370350619e-6
allele num: 120016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.66G>A
  hgvsp: ENST00000590867.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.66G>A
  hgvsp: ENST00000590473.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.66G>A
  hgvsp: ENST00000588421.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.66G>A
  hgvsp: ENST00000543576.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.216G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.137G>A
  hgvsp: ENSP00000466334.1:p.Cys46Tyr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.198G>A
  hgvsp: ENST00000381480.2:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.66G>A
  hgvsp: ENST00000590173.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.251G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys46Tyr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum

19-6479048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479048
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479048
    reference: chr 19
allele count: 3
allele frequency: 2.500333377783705e-5
allele num: 119984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.64G>A
  hgvsp: ENSP00000437805.1:p.Val22Met
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.214G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.249G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.64G>A
  hgvsp: ENSP00000467008.1:p.Val22Met
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.64G>A
  hgvsp: ENSP00000465675.1:p.Val22Met
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.196G>A
  hgvsp: ENSP00000370889.1:p.Val66Met
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.135G>A
  hgvsp: ENST00000586046.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.64G>A
  hgvsp: ENSP00000466583.1:p.Val22Met
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.64G>A
  hgvsp: ENSP00000466394.1:p.Val22Met
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10897
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val66Met
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

19-6479049-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479049
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479049
    reference: chr 19
allele count: 26
allele frequency: 2.168148234626995e-4
allele num: 119918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.134C>T
  hgvsp: ENSP00000466334.1:p.Pro45Leu
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.63C>T
  hgvsp: ENST00000590473.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.63C>T
  hgvsp: ENST00000590173.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.63C>T
  hgvsp: ENST00000588421.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.63C>T
  hgvsp: ENST00000590867.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.63C>T
  hgvsp: ENST00000543576.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.248C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.213C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.195C>T
  hgvsp: ENST00000381480.2:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro45Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

19-6479051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479051
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479051
    reference: chr 19
allele count: 1
allele frequency: 8.339031671642289e-6
allele num: 119918
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.246G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.211G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.61G>A
  hgvsp: ENSP00000437805.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.61G>A
  hgvsp: ENSP00000466394.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.61G>A
  hgvsp: ENSP00000465675.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.132G>A
  hgvsp: ENST00000586046.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.61G>A
  hgvsp: ENSP00000466583.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.61G>A
  hgvsp: ENSP00000467008.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.193G>A
  hgvsp: ENSP00000370889.1:p.Ala65Thr
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala65Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

19-6479062-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479062
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479062
    reference: chr 19
allele count: 1
allele frequency: 8.360924383799873e-6
allele num: 119604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.50C>A
  hgvsp: ENSP00000466583.1:p.Pro17His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.50C>A
  hgvsp: ENSP00000466394.1:p.Pro17His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.50C>A
  hgvsp: ENSP00000467008.1:p.Pro17His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.50C>A
  hgvsp: ENSP00000465675.1:p.Pro17His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.121C>A
  hgvsp: ENSP00000466334.1:p.Pro41Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.50C>A
  hgvsp: ENSP00000437805.1:p.Pro17His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.200C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.182C>A
  hgvsp: ENSP00000370889.1:p.Pro61His
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.235C>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7283
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10888
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro61His
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

19-6479063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479063
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479063
    reference: chr 19
allele count: 60
allele frequency: 5.018065034122842e-4
allele num: 119568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.234C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.49C>T
  hgvsp: ENSP00000437805.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.49C>T
  hgvsp: ENSP00000466394.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.181C>T
  hgvsp: ENSP00000370889.1:p.Pro61Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.49C>T
  hgvsp: ENSP00000467008.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.49C>T
  hgvsp: ENSP00000466583.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.49C>T
  hgvsp: ENSP00000465675.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.199C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.120C>T
  hgvsp: ENST00000586046.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13565
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20008
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7848
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7272
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro61Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

19-6479063-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479063
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479063
    reference: chr 19
allele count: 1
allele frequency: 8.36344172353807e-6
allele num: 119568
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.181C>A
  hgvsp: ENSP00000370889.1:p.Pro61Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.49C>A
  hgvsp: ENSP00000466394.1:p.Pro17Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.49C>A
  hgvsp: ENSP00000466583.1:p.Pro17Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.49C>A
  hgvsp: ENSP00000437805.1:p.Pro17Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.199C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.120C>A
  hgvsp: ENSP00000466334.1:p.Ser40Arg
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.234C>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.49C>A
  hgvsp: ENSP00000465675.1:p.Pro17Thr
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.49C>A
  hgvsp: ENSP00000467008.1:p.Pro17Thr
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10907
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro61Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/19-6479064-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479064
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479064
    reference: chr 19
allele count: 1
allele frequency: 8.362602441879913e-6
allele num: 119580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.48G>T
  hgvsp: ENSP00000466394.1:p.Glu16Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.48G>T
  hgvsp: ENSP00000437805.1:p.Glu16Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.233G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.180G>T
  hgvsp: ENSP00000370889.1:p.Glu60Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.198G>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.48G>T
  hgvsp: ENSP00000467008.1:p.Glu16Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.48G>T
  hgvsp: ENSP00000466583.1:p.Glu16Asp
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.119G>T
  hgvsp: ENSP00000466334.1:p.Ser40Ile
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.48G>T
  hgvsp: ENSP00000465675.1:p.Glu16Asp
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu60Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

19-6479079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479079
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479079
    reference: chr 19
allele count: 1
allele frequency: 8.374507997655138e-6
allele num: 119410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.177-12T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.218T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.45-12T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.195-12T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.45-12T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.45-12T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.45-12T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.45-12T>C
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.116-12T>C
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

19-6479085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479085
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479085
    reference: chr 19
allele count: 21
allele frequency: 1.76006168597147e-4
allele num: 119314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.45-18C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.45-18C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.45-18C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.195-18C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.177-18C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.116-18C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.215-3C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.45-18C>T
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.45-18C>T
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: n.215-3C>T
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

19-6479087-TAGAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479087
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479083
    reference: chr 19
allele count: 1
allele frequency: 8.384338056510439e-6
allele num: 119270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.45-24_45-21delCTCT
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.177-24_177-21delCTCT
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.45-24_45-21delCTCT
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.45-24_45-21delCTCT
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.45-24_45-21delCTCT
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.215-9_215-6delCTCT
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.45-24_45-21delCTCT
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.195-24_195-21delCTCT
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.116-24_116-21delCTCT
  variant of: http://identifiers.org/hgnc/26225
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 2.25e1
  variant carriers: 0
hgvs: n.215-9_215-6delCTCT
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: TAGAG
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

19-6479101-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 6479101
    reference: chr 19
  end: Position
    type: ExactPosition
    position: 6479101
    reference: chr 19
allele count: 13
allele frequency: 1.092822676911179e-4
allele num: 118958
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000370889
  ensembl transcript: ENST00000381480
  gene symbol: DENND1C
  hgvsc: ENST00000381480.2:c.177-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000467008
  ensembl transcript: ENST00000590173
  gene symbol: DENND1C
  hgvsc: ENST00000590173.1:c.45-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000592543
  gene symbol: DENND1C
  hgvsc: ENST00000592543.1:n.195-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466394
  ensembl transcript: ENST00000588421
  gene symbol: DENND1C
  hgvsc: ENST00000588421.1:c.45-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466583
  ensembl transcript: ENST00000590473
  gene symbol: DENND1C
  hgvsc: ENST00000590473.1:c.45-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000437805
  ensembl transcript: ENST00000543576
  gene symbol: DENND1C
  hgvsc: ENST00000543576.1:c.45-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000465675
  ensembl transcript: ENST00000590867
  gene symbol: DENND1C
  hgvsc: ENST00000590867.1:c.45-34G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl transcript: ENST00000591030
  gene symbol: DENND1C
  hgvsc: ENST00000591030.1:n.215-19G>A
  variant of: http://identifiers.org/hgnc/26225
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205744
  ensembl protein: ENSP00000466334
  ensembl transcript: ENST00000586046
  gene symbol: DENND1C
  hgvsc: ENST00000586046.1:c.116-34G>A
  variant of: http://identifiers.org/hgnc/26225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18970
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11722
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6355
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37613
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.202790473899447e-4
allele num: 8314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564700359881083e-5
allele num: 63910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.107e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

FS
type: SiteQuality
SIO_000300: 9.92e0

DP
type: SiteQuality
SIO_000300: 1.437123e6

QD
type: SiteQuality
SIO_000300: 1.08e1

GenotypeQuality
all individuals: 2358
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 600
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546742560168286e-5
allele num: 64652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.597e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.457721e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

QD
type: SiteQuality
SIO_000300: 3.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.99e-1

GenotypeQuality
all individuals: 361
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6842
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2097
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.135839384878257e-4
allele num: 9364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-1

DP
type: SiteQuality
SIO_000300: 1.466688e6

FS
type: SiteQuality
SIO_000300: 1.768e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 1.472e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.545e0

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
all individuals: 37188
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 595
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 662
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 619
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 6864
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3009
bin: 9.75e1
variant carriers: 1027

GenotypeQuality
all individuals: 1528
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1963
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2452
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 563
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 564
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2539
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 365
bin: 4.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.239618197595141e-4
allele num: 16134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

African
type: Population
allele count: 1038
allele frequency: 1.091023754467101e-1
allele num: 9514
num of homozygotes: 51

Other
type: Population
allele count: 2
allele frequency: 2.267573696145125e-3
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 58
allele frequency: 5.261248185776488e-3
allele num: 11024
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.534825183411609e-4
allele num: 65154
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.491e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.21e0

DP
type: SiteQuality
SIO_000300: 1.494866e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65502
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.837678307919331e-4
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.411e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 1.091e0

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.75e-1

DP
type: SiteQuality
SIO_000300: 1.497344e6

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2689
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524669146795145e-5
allele num: 65588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.179999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

FS
type: SiteQuality
SIO_000300: 3.761e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

QD
type: SiteQuality
SIO_000300: 1.094e1

DP
type: SiteQuality
SIO_000300: 1.503326e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524297298945186e-5
allele num: 65604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.133464180569185e-5
allele num: 16304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.225e0

QD
type: SiteQuality
SIO_000300: 1.425e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 8.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

FS
type: SiteQuality
SIO_000300: 3.191e0

DP
type: SiteQuality
SIO_000300: 1.503657e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 542
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.125752874612155e-5
allele num: 65748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 2.437e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.514493e6

GenotypeQuality
all individuals: 654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.604794062176796e-5
allele num: 65748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.437e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.08e-1

DP
type: SiteQuality
SIO_000300: 1.514493e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 367
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

DP
type: SiteQuality
SIO_000300: 1.529394e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.585e0

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 8.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.327e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65978
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.531441e6

QD
type: SiteQuality
SIO_000300: 1.547e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.834e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.46e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.469794578825817e-4
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66128
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511761504505049e-5
allele num: 66148
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.546242e6

GenotypeQuality
all individuals: 302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8032
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029654036243822e-4
allele num: 9712
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.429838415745353e-4
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.981615080288574e-4
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66176
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.301e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

FS
type: SiteQuality
SIO_000300: 5.811e0

DP
type: SiteQuality
SIO_000300: 1.549381e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: -1.945e0

DP
type: SiteQuality
SIO_000300: 1.55854e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 2.078e1

GenotypeQuality
all individuals: 824
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66318
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.07e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.76e-1

FS
type: SiteQuality
SIO_000300: 1.4937e1

VQSLOD
type: SiteQuality
SIO_000300: -7.674e-1

DP
type: SiteQuality
SIO_000300: 1.560441e6

GenotypeQuality
all individuals: 3153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2459
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511350240304688e-5
allele num: 66166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.027e-1

FS
type: SiteQuality
SIO_000300: 2.489e0

DP
type: SiteQuality
SIO_000300: 1.566873e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
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GenotypeQuality
all individuals: 264
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 37241
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 820
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2459
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.534050720914064e-5
allele num: 66166
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.489e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.027e-1

DP
type: SiteQuality
SIO_000300: 1.566873e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 2.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

GenotypeQuality
all individuals: 446
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37241
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
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variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022700480609376e-5
allele num: 66166
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

FS
type: SiteQuality
SIO_000300: 2.489e0

VQSLOD
type: SiteQuality
SIO_000300: -7.027e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 1.566873e6

QD
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
all individuals: 2471
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 827
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37336
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 7.25e1
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GenotypeQuality
all individuals: 8155
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variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
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GenotypeQuality
all individuals: 163
bin: 5.75e1
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GenotypeQuality
all individuals: 2080
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.027749229188078e-4
allele num: 9730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66172
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

DP
type: SiteQuality
SIO_000300: 1.56905e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.474e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.173e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.967e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
all individuals: 229
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 9.25e1
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GenotypeQuality
all individuals: 163
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2080
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022426403917065e-5
allele num: 66172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.967e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.173e0

DP
type: SiteQuality
SIO_000300: 1.56905e6

QD
type: SiteQuality
SIO_000300: 1.474e1

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2547
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37367
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 1.571318e6

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.625e0

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 9.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

QD
type: SiteQuality
SIO_000300: 1.56e1

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2547
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 869
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.571318e6

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

FS
type: SiteQuality
SIO_000300: 9.11e-1

QD
type: SiteQuality
SIO_000300: 1.56e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.625e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25169
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.032140691328078e-4
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 7.188334360238242e-4
allele num: 9738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.355830069297981e-4
allele num: 66380
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.519999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.144e0

DP
type: SiteQuality
SIO_000300: 2.239179e6

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

QD
type: SiteQuality
SIO_000300: 1.743e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 27

GenotypeQuality
all individuals: 269
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 14

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 20

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 439
bin: 9.25e1
variant carriers: 93

GenotypeQuality
all individuals: 4832
bin: 6.75e1
variant carriers: 43

GenotypeQuality
all individuals: 1836
bin: 7.75e1
variant carriers: 62

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 25

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 69

GenotypeQuality
all individuals: 25169
bin: 9.75e1
variant carriers: 24502

GenotypeQuality
all individuals: 1735
bin: 7.25e1
variant carriers: 47

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 13

GenotypeQuality
all individuals: 23397
bin: 6.25e1
variant carriers: 40

Latino
type: Population
allele count: 1822
allele frequency: 1.58214657867315e-1
allele num: 11516
num of homozygotes: 160

South Asian
type: Population
allele count: 4976
allele frequency: 3.016854613798957e-1
allele num: 16494
num of homozygotes: 748

European (Non-Finnish)
type: Population
allele count: 12485
allele frequency: 1.880837601687255e-1
allele num: 66380
num of homozygotes: 1171

East Asian
type: Population
allele count: 3832
allele frequency: 4.471411901983664e-1
allele num: 8570
num of homozygotes: 861

African
type: Population
allele count: 4844
allele frequency: 4.974327377284863e-1
allele num: 9738
num of homozygotes: 1222

Other
type: Population
allele count: 214
allele frequency: 2.40990990990991e-1
allele num: 888
num of homozygotes: 32

European (Finnish)
type: Population
allele count: 1192
allele frequency: 1.807155852031534e-1
allele num: 6596
num of homozygotes: 100

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.519999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.144e0

QD
type: SiteQuality
SIO_000300: 1.743e1

DP
type: SiteQuality
SIO_000300: 2.239179e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1735
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4832
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.126126126126126e-3
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026904908605463e-4
allele num: 9738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.506477854775535e-4
allele num: 66380
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.151934036619377e-3
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.144e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.519999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.743e1

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

DP
type: SiteQuality
SIO_000300: 2.239179e6

GenotypeQuality
all individuals: 28813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10923
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQ
type: SiteQuality
SIO_000300: 5.864e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.561e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

DP
type: SiteQuality
SIO_000300: 1.953338e6

FS
type: SiteQuality
SIO_000300: 2.767e0

QD
type: SiteQuality
SIO_000300: 1.68e1

VQSLOD
type: SiteQuality
SIO_000300: -1.028e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.513e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10923
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007971123477215e-5
allele num: 66490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.664e0

FS
type: SiteQuality
SIO_000300: 7.0e-1

QD
type: SiteQuality
SIO_000300: 1.5e1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

DP
type: SiteQuality
SIO_000300: 1.953904e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e-1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10931
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7571
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 28994
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.015580353114567e-5
allele num: 66494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

FS
type: SiteQuality
SIO_000300: 7.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.351e0

QD
type: SiteQuality
SIO_000300: 1.272e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

DP
type: SiteQuality
SIO_000300: 1.955639e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29035
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2865
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.634161114476075e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.95575e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
SIO_000300: 1.311e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

GenotypeQuality
all individuals: 213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.026e0

DP
type: SiteQuality
SIO_000300: 1.955552e6

FS
type: SiteQuality
SIO_000300: 1.234e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: -1.778e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

QD
type: SiteQuality
SIO_000300: 9.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.26e-1

GenotypeQuality
all individuals: 1798
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3580
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.827e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.955613e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

QD
type: SiteQuality
SIO_000300: 1.341e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.241e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10914
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2855
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006524157421605e-5
allele num: 66522
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.35e0

QD
type: SiteQuality
SIO_000300: 1.091e1

FS
type: SiteQuality
SIO_000300: 2.199e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

DP
type: SiteQuality
SIO_000300: 1.95614e6

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 7514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11040
bin: 9.75e1
variant carriers: 234

GenotypeQuality
all individuals: 29083
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.521058965102287e-5
allele num: 66480
num of homozygotes: 0

African
type: Population
allele count: 216
allele frequency: 2.211755068605365e-2
allele num: 9766
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.38264777048047e-3
allele num: 11572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.171e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

DP
type: SiteQuality
SIO_000300: 1.965657e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7514
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

QD
type: SiteQuality
SIO_000300: 1.208e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.171e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e0

DP
type: SiteQuality
SIO_000300: 1.965657e6

GenotypeQuality
all individuals: 29002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
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variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
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GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10893
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3563
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.954341e6

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 5.4e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
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GenotypeQuality
all individuals: 3563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 98
bin: 5.75e1
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GenotypeQuality
all individuals: 66
bin: 3.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 10893
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 29002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.514129224472599e-5
allele num: 66458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.01e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

DP
type: SiteQuality
SIO_000300: 1.954341e6

GenotypeQuality
all individuals: 29056
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 1254
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GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 7492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 7.25e1
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GenotypeQuality
all individuals: 3558
bin: 7.75e1
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GenotypeQuality
all individuals: 2583
bin: 8.25e1
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GenotypeQuality
all individuals: 218
bin: 2.25e1
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GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10971
bin: 9.75e1
variant carriers: 144

GenotypeQuality
all individuals: 1801
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 122
allele frequency: 1.250512505125051e-2
allele num: 9756
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.955828368538244e-4
allele num: 66468
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.914433880726015e-4
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 1.163e0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

DP
type: SiteQuality
SIO_000300: 1.960682e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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VQSLOD
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DP
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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SIO_000300: -3.126e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 11570
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.008785654110001e-5
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European (Finnish)
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allele frequency: 0.0e0
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QD
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66494
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Latino
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South Asian
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allele num: 16512
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Other
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MQRankSum
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.159823706796567e-4
allele num: 8622
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.024170421958214e-4
allele num: 9764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -1.575e0

ReadPosRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele num: 66530
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South Asian
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ClippingRankSum
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DP
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VQSLOD
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QD
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66528
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African
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East Asian
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South Asian
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Latino
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European (Finnish)
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

East Asian
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European (Finnish)
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African
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Other
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Latino
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ClippingRankSum
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DP
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FS
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MQ
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.503714174009804e-5
allele num: 66502
num of homozygotes: 0

Latino
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South Asian
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allele frequency: 4.844961240310077e-4
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East Asian
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African
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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DP
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ClippingRankSum
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QD
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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European (Finnish)
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DP
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ReadPosRankSum
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MQRankSum
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FS
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QD
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66506
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East Asian
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Other
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Latino
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South Asian
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African
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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East Asian
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African
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Other
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European (Finnish)
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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FS
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QD
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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East Asian
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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Other
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Latino
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East Asian
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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MQ
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QD
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.058361052313275e-3
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.029554263565892e-3
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 73
allele frequency: 1.098471168893704e-3
allele num: 66456
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.320774282751469e-4
allele num: 11572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.19e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 1.96199e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.283e0

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

QD
type: SiteQuality
SIO_000300: 1.182e1

GenotypeQuality
all individuals: 29367
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
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GenotypeQuality
all individuals: 379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 1260
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variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010144185906505e-5
allele num: 66442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

QD
type: SiteQuality
SIO_000300: 6.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.822e-1

DP
type: SiteQuality
SIO_000300: 1.953778e6

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10895
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3571
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.822e-1

DP
type: SiteQuality
SIO_000300: 1.953778e6

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 6.26e0

GenotypeQuality
all individuals: 7507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10895
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 1814
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1260
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
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variant carriers: 0

GenotypeQuality
all individuals: 29359
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.515488124266233e-5
allele num: 66438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.008e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.103e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 5.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.953679e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.346e0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 1260
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variant carriers: 0

GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 2581
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
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variant carriers: 0

GenotypeQuality
all individuals: 110
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GenotypeQuality
all individuals: 748
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 7380
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GenotypeQuality
all individuals: 28635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511578692786746e-5
allele num: 66156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -9.236e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.940248e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.154e1

MQRankSum
type: SiteQuality
SIO_000300: 2.26e0

GenotypeQuality
all individuals: 2790
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28630
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 180
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GenotypeQuality
all individuals: 3556
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1261
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GenotypeQuality
all individuals: 2581
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.036269430051813e-4
allele num: 9650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.02416306287235e-5
allele num: 66134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.939365e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

GenotypeQuality
all individuals: 28522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.25e1
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GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 10916
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variant carriers: 26

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.723806065008171e-4
allele num: 66084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.037344398340249e-4
allele num: 9640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.186721991701245e-4
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.165e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.939973e6

GenotypeQuality
all individuals: 196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7356
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10898
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

VQSLOD
type: SiteQuality
SIO_000300: -6.046e-1

DP
type: SiteQuality
SIO_000300: 1.93837e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 220
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GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 53
bin: 4.75e1
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GenotypeQuality
all individuals: 215
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 28355
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 947
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GenotypeQuality
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GenotypeQuality
all individuals: 1265
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GenotypeQuality
all individuals: 2568
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GenotypeQuality
all individuals: 2762
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518187890933382e-5
allele num: 65868
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

DP
type: SiteQuality
SIO_000300: 1.931837e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.39e-1

FS
type: SiteQuality
SIO_000300: 5.737e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

GenotypeQuality
all individuals: 2762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10907
bin: 9.75e1
variant carriers: 60

GenotypeQuality
all individuals: 2563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3538
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 55
allele frequency: 5.737533903609431e-3
allele num: 9586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.074780548552684e-5
allele num: 65846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.291e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

DP
type: SiteQuality
SIO_000300: 1.933168e6

FS
type: SiteQuality
SIO_000300: 3.703e0

QD
type: SiteQuality
SIO_000300: 1.11e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3538
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7272
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65846
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.291e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 1.933168e6

QD
type: SiteQuality
SIO_000300: 1.11e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

FS
type: SiteQuality
SIO_000300: 3.703e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
all individuals: 1813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10868
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65864
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.174e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.617e0

DP
type: SiteQuality
SIO_000300: 1.930039e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.551e0

FS
type: SiteQuality
SIO_000300: 1.1915e1

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10866
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2552
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.344e0

DP
type: SiteQuality
SIO_000300: 1.918238e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -2.383e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

MQ
type: SiteQuality
SIO_000300: 5.883e1

QD
type: SiteQuality
SIO_000300: 1.437e1

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10863
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 518
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 21
allele frequency: 2.444703143189756e-3
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.34e0

QD
type: SiteQuality
SIO_000300: 1.258e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 1.912534e6

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.951e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

GenotypeQuality
all individuals: 3475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10853
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522209029743965e-5
allele num: 65694
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 3.418e0

MQ
type: SiteQuality
SIO_000300: 5.494e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

MQRankSum
type: SiteQuality
SIO_000300: -3.254e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

DP
type: SiteQuality
SIO_000300: 1.90749e6