16-88778669-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778669
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778669
    reference: chr 16
allele count: 1
allele frequency: 3.020053152935492e-5
allele num: 33112
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.344-13C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.344-13C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.83-13C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.161-13C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.544C>T
  hgvsp: ENST00000567949.1:c.544C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*55-13C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.180-13C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34852
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1665
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Leu182Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

16-88778671-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778671
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778671
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 34408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.83-11G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*55-11G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.344-11G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.344-11G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.546G>C
  hgvsp: ENST00000567949.1:c.546G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.180-11G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.161-11G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35016
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7948
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu182Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

16-88778674-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778674
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778674
    reference: chr 16
allele count: 1
allele frequency: 2.754213947339429e-5
allele num: 36308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*55-8T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.180-8T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.344-8T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.344-8T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.161-8T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.83-8T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.549T>G
  hgvsp: ENST00000567949.1:c.549T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33848
  bin: 2.25e1
  variant carriers: 0
hgvs: c.344-8T>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-88778678-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778678
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778678
    reference: chr 16
allele count: 1
allele frequency: 2.58825965420851e-5
allele num: 38636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.553T>C
  hgvsp: ENSP00000456908.1:p.Ser185Pro
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*55-4T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.83-4T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.344-4T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.161-4T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.180-4T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.344-4T>C
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9384
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser185Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

16-88778679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778679
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778679
    reference: chr 16
allele count: 1
allele frequency: 2.55271353448716e-5
allele num: 39174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.161-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*55-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.554C>T
  hgvsp: ENSP00000456908.1:p.Ser185Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.344-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.344-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.83-3C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.180-3C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser185Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

16-88778687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778687
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778687
    reference: chr 16
allele count: 2
allele frequency: 4.361859897060107e-5
allele num: 45852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.166G>A
  hgvsp: ENSP00000455010.1:p.Ala56Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.562G>A
  hgvsp: ENSP00000456908.1:p.Ala188Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.88G>A
  hgvsp: ENSP00000367635.3:p.Ala30Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.349G>A
  hgvsp: ENSP00000388320.2:p.Ala117Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.349G>A
  hgvsp: ENSP00000308617.5:p.Ala117Thr
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.185G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33373
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala117Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/16-88778691-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778691
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778691
    reference: chr 16
allele count: 1
allele frequency: 2.0047311655507e-5
allele num: 49882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.170C>A
  hgvsp: ENSP00000455010.1:p.Ala57Asp
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.189C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.92C>A
  hgvsp: ENSP00000367635.3:p.Ala31Asp
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.566C>A
  hgvsp: ENSP00000456908.1:p.Ala189Asp
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*64C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.353C>A
  hgvsp: ENSP00000388320.2:p.Ala118Asp
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.353C>A
  hgvsp: ENSP00000308617.5:p.Ala118Asp
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala118Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-88778691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778691
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778691
    reference: chr 16
allele count: 280
allele frequency: 5.613247263541959e-3
allele num: 49882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*64C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.353C>T
  hgvsp: ENSP00000388320.2:p.Ala118Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.92C>T
  hgvsp: ENSP00000367635.3:p.Ala31Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.189C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.566C>T
  hgvsp: ENSP00000456908.1:p.Ala189Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.353C>T
  hgvsp: ENSP00000308617.5:p.Ala118Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.170C>T
  hgvsp: ENSP00000455010.1:p.Ala57Val
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 32357
  bin: 7.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 1.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala118Val
num of homozygotes: 2
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-88778697-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778697
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778697
    reference: chr 16
allele count: 4
allele frequency: 7.32493407559332e-5
allele num: 54608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*70G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.176G>T
  hgvsp: ENSP00000455010.1:p.Gly59Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.98G>T
  hgvsp: ENSP00000367635.3:p.Gly33Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.359G>T
  hgvsp: ENSP00000308617.5:p.Gly120Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.359G>T
  hgvsp: ENSP00000388320.2:p.Gly120Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.572G>T
  hgvsp: ENSP00000456908.1:p.Gly191Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.195G>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12570
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30579
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15492
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly120Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-88778701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778701
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778701
    reference: chr 16
allele count: 1
allele frequency: 1.737740242588538e-5
allele num: 57546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.180G>A
  hgvsp: ENST00000564921.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.363G>A
  hgvsp: ENST00000312060.5:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*74G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.363G>A
  hgvsp: ENST00000453996.2:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.576G>A
  hgvsp: ENST00000567949.1:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.102G>A
  hgvsp: ENST00000378384.3:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.199G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29909
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln121Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-88778705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778705
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778705
    reference: chr 16
allele count: 1
allele frequency: 1.648967746190884e-5
allele num: 60644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.367C>T
  hgvsp: ENST00000312060.5:c.367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.367C>T
  hgvsp: ENST00000453996.2:c.367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.203C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.184C>T
  hgvsp: ENST00000564921.1:c.184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.106C>T
  hgvsp: ENST00000378384.3:c.106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.580C>T
  hgvsp: ENST00000567949.1:c.580C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu123Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-88778713-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778713
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778713
    reference: chr 16
allele count: 2
allele frequency: 3.00507858280494e-5
allele num: 66554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.375G>A
  hgvsp: ENST00000312060.5:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.375G>A
  hgvsp: ENST00000453996.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.211G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.114G>A
  hgvsp: ENST00000378384.3:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*86G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.588G>A
  hgvsp: ENST00000567949.1:c.588G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.192G>A
  hgvsp: ENST00000564921.1:c.192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25829
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu125Glu
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

16-88778715-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778715
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778715
    reference: chr 16
allele count: 1
allele frequency: 1.476886722788362e-5
allele num: 67710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.590G>T
  hgvsp: ENSP00000456908.1:p.Arg197Ile
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.213G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.377G>T
  hgvsp: ENSP00000388320.2:p.Arg126Ile
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.194G>T
  hgvsp: ENSP00000455010.1:p.Arg65Ile
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.116G>T
  hgvsp: ENSP00000367635.3:p.Arg39Ile
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*88G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.377G>T
  hgvsp: ENSP00000308617.5:p.Arg126Ile
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg126Ile
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/16-88778718-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778718
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778718
    reference: chr 16
allele count: 1
allele frequency: 1.444919662466767e-5
allele num: 69208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.380C>A
  hgvsp: ENSP00000308617.5:p.Ser127Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.119C>A
  hgvsp: ENSP00000367635.3:p.Ser40Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*91C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.216C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.197C>A
  hgvsp: ENSP00000455010.1:p.Ser66Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.380C>A
  hgvsp: ENSP00000388320.2:p.Ser127Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.593C>A
  hgvsp: ENSP00000456908.1:p.Ser198Ter
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser127Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

16-88778718-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778718
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778718
    reference: chr 16
allele count: 1
allele frequency: 1.444919662466767e-5
allele num: 69208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.380C>G
  hgvsp: ENSP00000308617.5:p.Ser127Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.216C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.593C>G
  hgvsp: ENSP00000456908.1:p.Ser198Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.197C>G
  hgvsp: ENSP00000455010.1:p.Ser66Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.380C>G
  hgvsp: ENSP00000388320.2:p.Ser127Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.119C>G
  hgvsp: ENSP00000367635.3:p.Ser40Ter
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*91C>G
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser127Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

16-88778719-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778719
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778719
    reference: chr 16
allele count: 1
allele frequency: 1.429674320189861e-5
allele num: 69946
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.381A>G
  hgvsp: ENST00000453996.2:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.381A>G
  hgvsp: ENST00000312060.5:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*92A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.198A>G
  hgvsp: ENST00000564921.1:c.198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.217A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.120A>G
  hgvsp: ENST00000378384.3:c.120A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.594A>G
  hgvsp: ENST00000567949.1:c.594A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19383
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25712
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22304
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser127Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

16-88778724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778724
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778724
    reference: chr 16
allele count: 14
allele frequency: 1.936644072485821e-4
allele num: 72290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*97C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.599C>T
  hgvsp: ENSP00000456908.1:p.Thr200Ile
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.386C>T
  hgvsp: ENSP00000388320.2:p.Thr129Ile
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.125C>T
  hgvsp: ENSP00000367635.3:p.Thr42Ile
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.386C>T
  hgvsp: ENSP00000308617.5:p.Thr129Ile
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.203C>T
  hgvsp: ENSP00000455010.1:p.Thr68Ile
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.222C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23198
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr129Ile
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

16-88778725-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778725
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778725
    reference: chr 16
allele count: 1
allele frequency: 1.371591594886706e-5
allele num: 72908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.223C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*98C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.126C>G
  hgvsp: ENST00000378384.3:c.126C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.387C>G
  hgvsp: ENST00000312060.5:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.600C>G
  hgvsp: ENST00000567949.1:c.600C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.387C>G
  hgvsp: ENST00000453996.2:c.387C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.204C>G
  hgvsp: ENST00000564921.1:c.204C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr129Thr
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

16-88778725-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778725
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778725
    reference: chr 16
allele count: 1
allele frequency: 1.371591594886706e-5
allele num: 72908
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.387C>T
  hgvsp: ENST00000453996.2:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.126C>T
  hgvsp: ENST00000378384.3:c.126C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.600C>T
  hgvsp: ENST00000567949.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*98C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.387C>T
  hgvsp: ENST00000312060.5:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.204C>T
  hgvsp: ENST00000564921.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.223C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr129Thr
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-88778726-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778726
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778726
    reference: chr 16
allele count: 2
allele frequency: 2.723459883435917e-5
allele num: 73436
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.388C>G
  hgvsp: ENSP00000388320.2:p.Leu130Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.388C>G
  hgvsp: ENSP00000308617.5:p.Leu130Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*99C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.205C>G
  hgvsp: ENSP00000455010.1:p.Leu69Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.127C>G
  hgvsp: ENSP00000367635.3:p.Leu43Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.601C>G
  hgvsp: ENSP00000456908.1:p.Leu201Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.224C>G
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu130Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

16-88778727-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778727
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778727
    reference: chr 16
allele count: 1
allele frequency: 1.350402419921137e-5
allele num: 74052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.389T>G
  hgvsp: ENSP00000308617.5:p.Leu130Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.225T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.206T>G
  hgvsp: ENSP00000455010.1:p.Leu69Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.389T>G
  hgvsp: ENSP00000388320.2:p.Leu130Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.602T>G
  hgvsp: ENSP00000456908.1:p.Leu201Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*100T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.128T>G
  hgvsp: ENSP00000367635.3:p.Leu43Arg
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu130Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/16-88778731-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778731
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778731
    reference: chr 16
allele count: 4
allele frequency: 5.285132921092965e-5
allele num: 75684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.606C>A
  hgvsp: ENST00000567949.1:c.606C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.210C>A
  hgvsp: ENST00000564921.1:c.210C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.393C>A
  hgvsp: ENST00000312060.5:c.393C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*104C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.132C>A
  hgvsp: ENST00000378384.3:c.132C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.393C>A
  hgvsp: ENST00000453996.2:c.393C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.229C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21289
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23935
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Ala131Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

16-88778731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778731
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778731
    reference: chr 16
allele count: 3
allele frequency: 3.963849690819724e-5
allele num: 75684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.210C>T
  hgvsp: ENST00000564921.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.132C>T
  hgvsp: ENST00000378384.3:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.606C>T
  hgvsp: ENST00000567949.1:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.393C>T
  hgvsp: ENST00000312060.5:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*104C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.229C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.393C>T
  hgvsp: ENST00000453996.2:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23501
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala131Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

16-88778732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778732
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778732
    reference: chr 16
allele count: 1
allele frequency: 1.311544212155392e-5
allele num: 76246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.133G>A
  hgvsp: ENSP00000367635.3:p.Glu45Lys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.211G>A
  hgvsp: ENSP00000455010.1:p.Glu71Lys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.230G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*105G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.394G>A
  hgvsp: ENSP00000308617.5:p.Glu132Lys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.607G>A
  hgvsp: ENSP00000456908.1:p.Glu203Lys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.394G>A
  hgvsp: ENSP00000388320.2:p.Glu132Lys
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5242
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24762
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23242
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu132Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-88778742-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778742
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778742
    reference: chr 16
allele count: 29
allele frequency: 3.670049862056747e-4
allele num: 79018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.617C>G
  hgvsp: ENSP00000456908.1:p.Pro206Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.404C>G
  hgvsp: ENSP00000308617.5:p.Pro135Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.143C>G
  hgvsp: ENSP00000367635.3:p.Pro48Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.221C>G
  hgvsp: ENSP00000455010.1:p.Pro74Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.404C>G
  hgvsp: ENSP00000388320.2:p.Pro135Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*115C>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.240C>G
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19992
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21793
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro135Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

16-88778742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778742
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778742
    reference: chr 16
allele count: 1
allele frequency: 1.265534435191982e-5
allele num: 79018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*115C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.143C>T
  hgvsp: ENSP00000367635.3:p.Pro48Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.240C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.404C>T
  hgvsp: ENSP00000388320.2:p.Pro135Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.617C>T
  hgvsp: ENSP00000456908.1:p.Pro206Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.404C>T
  hgvsp: ENSP00000308617.5:p.Pro135Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.221C>T
  hgvsp: ENSP00000455010.1:p.Pro74Leu
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21793
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro135Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

16-88778747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778747
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778747
    reference: chr 16
allele count: 1
allele frequency: 1.265214200764189e-5
allele num: 79038
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.409C>T
  hgvsp: ENST00000453996.2:c.409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*120C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.409C>T
  hgvsp: ENST00000312060.5:c.409C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.622C>T
  hgvsp: ENST00000567949.1:c.622C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.226C>T
  hgvsp: ENST00000564921.1:c.226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.148C>T
  hgvsp: ENST00000378384.3:c.148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.245C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu137Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

16-88778749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778749
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778749
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 79354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.624G>A
  hgvsp: ENST00000567949.1:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.411G>A
  hgvsp: ENST00000312060.5:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.411G>A
  hgvsp: ENST00000453996.2:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.228G>A
  hgvsp: ENST00000564921.1:c.228G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*122G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.150G>A
  hgvsp: ENST00000378384.3:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.247G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20877
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19711
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23968
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Leu137Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

16-88778751-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778751
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778751
    reference: chr 16
allele count: 1
allele frequency: 1.252348152786475e-5
allele num: 79850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.249A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.413A>G
  hgvsp: ENSP00000308617.5:p.Gln138Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*124A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.413A>G
  hgvsp: ENSP00000388320.2:p.Gln138Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.626A>G
  hgvsp: ENSP00000456908.1:p.Gln209Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.152A>G
  hgvsp: ENSP00000367635.3:p.Gln51Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.230A>G
  hgvsp: ENSP00000455010.1:p.Gln77Arg
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21002
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23545
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln138Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

16-88778753-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778753
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778753
    reference: chr 16
allele count: 1
allele frequency: 1.252128618651708e-5
allele num: 79864
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.415G>T
  hgvsp: ENSP00000388320.2:p.Ala139Ser
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.628G>T
  hgvsp: ENSP00000456908.1:p.Ala210Ser
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.415G>T
  hgvsp: ENSP00000308617.5:p.Ala139Ser
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.232G>T
  hgvsp: ENSP00000455010.1:p.Ala78Ser
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*126G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.154G>T
  hgvsp: ENSP00000367635.3:p.Ala52Ser
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.251G>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24892
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala139Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

16-88778756-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778756
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778756
    reference: chr 16
allele count: 1
allele frequency: 1.255114591962246e-5
allele num: 79674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*129A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.235A>G
  hgvsp: ENSP00000455010.1:p.Thr79Ala
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.418A>G
  hgvsp: ENSP00000388320.2:p.Thr140Ala
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.418A>G
  hgvsp: ENSP00000308617.5:p.Thr140Ala
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.157A>G
  hgvsp: ENSP00000367635.3:p.Thr53Ala
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.254A>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.631A>G
  hgvsp: ENSP00000456908.1:p.Thr211Ala
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr140Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

16-88778759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778759
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778759
    reference: chr 16
allele count: 1
allele frequency: 1.267459251185074e-5
allele num: 78898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.257G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*132G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.421G>A
  hgvsp: ENSP00000308617.5:p.Gly141Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.421G>A
  hgvsp: ENSP00000388320.2:p.Gly141Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.238G>A
  hgvsp: ENSP00000455010.1:p.Gly80Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.634G>A
  hgvsp: ENSP00000456908.1:p.Gly212Arg
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.160G>A
  hgvsp: ENSP00000367635.3:p.Gly54Arg
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly141Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

16-88778762-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778762
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778762
    reference: chr 16
allele count: 40
allele frequency: 5.058552748058781e-4
allele num: 79074
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.260T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.637T>C
  hgvsp: ENSP00000456908.1:p.Phe213Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*135T>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.241T>C
  hgvsp: ENSP00000455010.1:p.Phe81Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.163T>C
  hgvsp: ENSP00000367635.3:p.Phe55Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.424T>C
  hgvsp: ENSP00000308617.5:p.Phe142Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.424T>C
  hgvsp: ENSP00000388320.2:p.Phe142Leu
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18636
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19842
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe142Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

16-88778764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778764
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778764
    reference: chr 16
allele count: 2
allele frequency: 2.542329791020491e-5
allele num: 78668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.426C>T
  hgvsp: ENST00000453996.2:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.165C>T
  hgvsp: ENST00000378384.3:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.426C>T
  hgvsp: ENST00000312060.5:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.243C>T
  hgvsp: ENST00000564921.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.639C>T
  hgvsp: ENST00000567949.1:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.262C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18025
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22231
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe142Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

16-88778774-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778774
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778774
    reference: chr 16
allele count: 1
allele frequency: 1.309140418401278e-5
allele num: 76386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.436G>T
  hgvsp: ENSP00000308617.5:p.Val146Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.175G>T
  hgvsp: ENSP00000367635.3:p.Val59Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.436G>T
  hgvsp: ENSP00000388320.2:p.Val146Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*147G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.253G>T
  hgvsp: ENSP00000455010.1:p.Val85Leu
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.272G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.649G>T
  hgvsp: ENSP00000456908.1:p.Val217Leu
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val146Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-88778776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778776
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778776
    reference: chr 16
allele count: 2
allele frequency: 2.654209576388152e-5
allele num: 75352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.438G>A
  hgvsp: ENST00000453996.2:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.651G>A
  hgvsp: ENST00000567949.1:c.651G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.438G>A
  hgvsp: ENST00000312060.5:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.177G>A
  hgvsp: ENST00000378384.3:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.255G>A
  hgvsp: ENST00000564921.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*149G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.274G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14207
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val146Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

16-88778781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778781
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778781
    reference: chr 16
allele count: 1
allele frequency: 1.347055337033245e-5
allele num: 74236
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.443C>T
  hgvsp: ENSP00000388320.2:p.Ala148Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.443C>T
  hgvsp: ENSP00000308617.5:p.Ala148Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.182C>T
  hgvsp: ENSP00000367635.3:p.Ala61Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.260C>T
  hgvsp: ENSP00000455010.1:p.Ala87Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*154C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.656C>T
  hgvsp: ENSP00000456908.1:p.Ala219Val
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.279C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala148Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-88778782-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778782
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778782
    reference: chr 16
allele count: 2
allele frequency: 2.704676385470478e-5
allele num: 73946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*155C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.657C>T
  hgvsp: ENST00000567949.1:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.183C>T
  hgvsp: ENST00000378384.3:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.444C>T
  hgvsp: ENST00000312060.5:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.444C>T
  hgvsp: ENST00000453996.2:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.280C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.261C>T
  hgvsp: ENST00000564921.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala148Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

16-88778789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778789
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778789
    reference: chr 16
allele count: 14
allele frequency: 1.96861465774228e-4
allele num: 71116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.190G>A
  hgvsp: ENSP00000367635.3:p.Glu64Lys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.451G>A
  hgvsp: ENSP00000308617.5:p.Glu151Lys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.451G>A
  hgvsp: ENSP00000388320.2:p.Glu151Lys
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000455010
  ensembl transcript: ENST00000564921
  gene symbol: CTU2
  hgvsc: ENST00000564921.1:c.268G>A
  hgvsp: ENST00000564921.1:c.268G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.287G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*162G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.664G>A
  hgvsp: ENSP00000456908.1:p.Glu222Lys
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18825
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 21612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu151Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

16-88778798-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778798
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778798
    reference: chr 16
allele count: 1
allele frequency: 1.491290861369602e-5
allele num: 67056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+7G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+7G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3993
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4939
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
hgvs: c.453+7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

16-88778798-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778798
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778798
    reference: chr 16
allele count: 1
allele frequency: 1.491290861369602e-5
allele num: 67056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+7G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+7G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+7G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+7G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+7G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+7G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4939
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3993
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
hgvs: c.453+7G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

16-88778801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778801
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778801
    reference: chr 16
allele count: 2
allele frequency: 3.09520861706079e-5
allele num: 64616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+10C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+10C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+10C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+10C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+10C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+10C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20889
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22053
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

16-88778802-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778802
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778802
    reference: chr 16
allele count: 1
allele frequency: 1.551734839550618e-5
allele num: 64444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+11T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+11T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+11T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+11T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+11T>G
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+11T>G
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22160
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20929
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3616
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32680
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

16-88778803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778803
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778803
    reference: chr 16
allele count: 1
allele frequency: 1.564064064064064e-5
allele num: 63936
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+12G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+12G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+12G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+12G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+12G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+12G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20921
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6302
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5085
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

16-88778805-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778805
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778805
    reference: chr 16
allele count: 3
allele frequency: 4.798617998016571e-5
allele num: 62518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+14C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+14C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+14C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+14C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+14C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+14C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5791
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20850
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6840
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4167
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

16-88778814-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778814
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778814
    reference: chr 16
allele count: 147
allele frequency: 2.64655048250036e-3
allele num: 55544
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+23G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+23G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+23G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+23G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+23G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+23G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 23370
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19103
  bin: 1.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 9829
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3013
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 4
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

16-88778820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778820
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778820
    reference: chr 16
allele count: 1
allele frequency: 2.111754022891414e-5
allele num: 47354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+29C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+29C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+29C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+29C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+29C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+29C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16350
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4979
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11079
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5916
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

16-88778821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778821
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778821
    reference: chr 16
allele count: 9
allele frequency: 1.920860545524395e-4
allele num: 46854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+30C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+30C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+30C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+30C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+30C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+30C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16343
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25700
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11047
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5002
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5498
  bin: 1.75e1
  variant carriers: 2
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

16-88778822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778822
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778822
    reference: chr 16
allele count: 145
allele frequency: 3.070992883768214e-3
allele num: 47216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+31G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 25827
  bin: 7.5e0
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 1.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4851
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 9.75e1
  variant carriers: 152
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/16-88778824-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778824
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778824
    reference: chr 16
allele count: 1
allele frequency: 2.178934065455179e-5
allele num: 45894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+33A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+33A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+33A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+33A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+33A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+33A>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11331
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

16-88778827-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778827
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778827
    reference: chr 16
allele count: 3
allele frequency: 6.811370447734085e-5
allele num: 44044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+36T>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27022
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14962
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6323
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4068
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/16-88778829-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778829
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778829
    reference: chr 16
allele count: 16
allele frequency: 4.170359172183704e-4
allele num: 38366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+38A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+38A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+38A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+38A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+38A>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+38A>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 27147
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14864
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5692
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3321
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7041
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5786
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-88778830-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778830
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778830
    reference: chr 16
allele count: 1
allele frequency: 2.268808421816862e-5
allele num: 44076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+39C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+39C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+39C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+39C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+39C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+39C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26877
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15002
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11061
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

16-88778831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778831
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778831
    reference: chr 16
allele count: 18413
allele frequency: 3.937430502095629e-1
allele num: 46764
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+40C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 1.75e1
  variant carriers: 2815
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 3.75e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 2.75e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 15908
  bin: 1.25e1
  variant carriers: 9358
genotype depth: GenotypeDepth
  all individuals: 8002
  bin: 2.5e0
  variant carriers: 1161
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.25e1
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 25978
  bin: 7.5e0
  variant carriers: 11049
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.25e1
  variant carriers: 763
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 4.25e1
  variant carriers: 494
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 8.25e1
  variant carriers: 850
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 1.25e1
  variant carriers: 668
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 5.25e1
  variant carriers: 703
genotype quality: GenotypeQuality
  all individuals: 4101
  bin: 1.75e1
  variant carriers: 1510
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 6.25e1
  variant carriers: 592
genotype quality: GenotypeQuality
  all individuals: 12247
  bin: 9.75e1
  variant carriers: 11846
genotype quality: GenotypeQuality
  all individuals: 10996
  bin: 2.25e1
  variant carriers: 1828
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 1054
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 2.5e0
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 3.25e1
  variant carriers: 1387
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 8.75e1
  variant carriers: 951
num of homozygotes: 3844
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

16-88778833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778833
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778833
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 41490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+42C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+42C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 26794
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6962
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18259
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3927
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

16-88778834-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778834
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778833
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 41874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+49delG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+49delG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+49delG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+49delG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+49delG
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+49delG
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26928
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11509
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3971
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19439
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: TG
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-88778835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778835
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778835
    reference: chr 16
allele count: 1
allele frequency: 2.386862707657056e-5
allele num: 41896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+44G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+44G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+44G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+44G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+44G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+44G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5542
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

16-88778835-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778835
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778835
    reference: chr 16
allele count: 4
allele frequency: 9.547450830628223e-5
allele num: 41896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+44G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+44G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+44G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+44G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+44G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+44G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14293
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5542
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3968
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

16-88778837-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778837
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778837
    reference: chr 16
allele count: 1
allele frequency: 2.405349497281955e-5
allele num: 41574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+46G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+46G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+46G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+46G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+46G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+46G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10851
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11481
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6275
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3996
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5679
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

16-88778841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778841
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778841
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 40330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.289+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.453+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.453+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*164+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.192+50C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.666+50C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27967
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5847
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

16-88778979-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778979
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778979
    reference: chr 16
allele count: 1
allele frequency: 9.19320438331985e-6
allele num: 108776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-51G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-51G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-51G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-51G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-51G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-51G>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11477
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16291
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/16-88778982-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778982
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778982
    reference: chr 16
allele count: 1
allele frequency: 9.205221201465471e-6
allele num: 108634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-48C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-48C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-48C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-48C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-48C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-48C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11537
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-88778990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778990
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778990
    reference: chr 16
allele count: 2
allele frequency: 1.834727726405401e-5
allele num: 109008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-40C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-40C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

16-88778991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778991
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778991
    reference: chr 16
allele count: 3
allele frequency: 2.747252747252747e-5
allele num: 109200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-39G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-39G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-39G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-39G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-39G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-39G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14658
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
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genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 5688
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2903
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
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genotype quality: GenotypeQuality
  all individuals: 1904
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genotype quality: GenotypeQuality
  all individuals: 1027
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genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 5996
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

16-88778994-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778994
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778994
    reference: chr 16
allele count: 2
allele frequency: 1.827318410232983e-5
allele num: 109450
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-36T>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-36T>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6829
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6080
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

16-88778996-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778996
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778996
    reference: chr 16
allele count: 6
allele frequency: 5.475151935466209e-5
allele num: 109586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-34C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-34C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-34C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-34C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-34C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-34C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16131
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
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genotype quality: GenotypeQuality
  all individuals: 946
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/16-88778997-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778997
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778997
    reference: chr 16
allele count: 2
allele frequency: 1.826851056833336e-5
allele num: 109478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-33C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-33C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-33C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-33C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-33C>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-33C>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5685
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 977
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 547
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

16-88778997-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778997
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778997
    reference: chr 16
allele count: 2
allele frequency: 1.826851056833336e-5
allele num: 109478
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-33C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-33C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-33C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-33C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-33C>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-33C>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4997
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

16-88778998-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778998
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778998
    reference: chr 16
allele count: 2
allele frequency: 1.822323462414579e-5
allele num: 109750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-32G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-32G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-32G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-32G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-32G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-32G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP

16-88778998-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778998
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778998
    reference: chr 16
allele count: 2
allele frequency: 1.822323462414579e-5
allele num: 109750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-32G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-32G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-32G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-32G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-32G>T
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-32G>T
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5691
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6212
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

16-88778999-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778999
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778999
    reference: chr 16
allele count: 2
allele frequency: 1.819703752229137e-5
allele num: 109908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-31G>A
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-31G>A
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

16-88778999-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88778999
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 88778999
    reference: chr 16
allele count: 2
allele frequency: 1.819703752229137e-5
allele num: 109908
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000454923
  ensembl transcript: ENST00000564105
  gene symbol: CTU2
  hgvsc: ENST00000564105.1:c.*165-31G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000308617
  ensembl transcript: ENST00000312060
  gene symbol: CTU2
  hgvsc: ENST00000312060.5:c.454-31G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000367635
  ensembl transcript: ENST00000378384
  gene symbol: CTU2
  hgvsc: ENST00000378384.3:c.193-31G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000456908
  ensembl transcript: ENST00000567949
  gene symbol: CTU2
  hgvsc: ENST00000567949.1:c.667-31G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl transcript: ENST00000566637
  gene symbol: CTU2
  hgvsc: ENST00000566637.1:n.290-31G>C
  variant of: http://identifiers.org/hgnc/28005
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174177
  ensembl protein: ENSP00000388320
  ensembl transcript: ENST00000453996
  gene symbol: CTU2
  hgvsc: ENST00000453996.2:c.454-31G>C
  variant of: http://identifiers.org/hgnc/28005
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12927
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4978
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ

GenotypeQuality
all individuals: 1126
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33066
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7601
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.433350488934638e-5
allele num: 15544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8668
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.717e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.394e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.72394e5

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

GenotypeQuality
all individuals: 1010
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7529
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

VQSLOD
type: SiteQuality
SIO_000300: -5.157e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.84315e5

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6552
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 406
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.675227394328518e-4
allele num: 3738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1934
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.043e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

QD
type: SiteQuality
SIO_000300: 1.468e1

DP
type: SiteQuality
SIO_000300: 7.02274e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

VQSLOD
type: SiteQuality
SIO_000300: -1.151e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

GenotypeQuality
all individuals: 793
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5420
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 1458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34573
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.108647450110865e-4
allele num: 9020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2370
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.21498e5

QD
type: SiteQuality
SIO_000300: 1.373e1

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.103509159126021e-4
allele num: 9062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.565e-1

FS
type: SiteQuality
SIO_000300: 3.245e0

MQRankSum
type: SiteQuality
SIO_000300: -1.55e0

DP
type: SiteQuality
SIO_000300: 7.28905e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.91e0

QD
type: SiteQuality
SIO_000300: 1.129e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

GenotypeQuality
all individuals: 244
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3487
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1591
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23216
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.504504504504505e-4
allele num: 4440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.994e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 1.4589e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.292e1

DP
type: SiteQuality
SIO_000300: 7.81077e5

GenotypeQuality
all individuals: 256
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32495
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
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variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.944640753828033e-4
allele num: 3396
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.15827e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.164e0

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.406e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

GenotypeQuality
all individuals: 256
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13660
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1645
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 236
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 404
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1137
bin: 9.75e1
variant carriers: 267

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 32495
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 846
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 957
bin: 3.75e1
variant carriers: 1

African
type: Population
allele count: 263
allele frequency: 5.298146655922643e-2
allele num: 4964
num of homozygotes: 2

Other
type: Population
allele count: 2
allele frequency: 5.319148936170213e-3
allele num: 376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.953277599812485e-4
allele num: 25598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.027115858668858e-4
allele num: 9736
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 2.665876777251185e-3
allele num: 3376
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 8.15827e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.406e0

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

FS
type: SiteQuality
SIO_000300: 1.164e0

QD
type: SiteQuality
SIO_000300: 1.222e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

GenotypeQuality
all individuals: 1657
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
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variant carriers: 0

GenotypeQuality
all individuals: 31001
bin: 2.25e1
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GenotypeQuality
all individuals: 897
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 414
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variant carriers: 1

GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 412
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variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28458
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.009081735620585e-3
allele num: 3964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.899e0

FS
type: SiteQuality
SIO_000300: 1.017e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 8.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

DP
type: SiteQuality
SIO_000300: 8.49909e5

GenotypeQuality
all individuals: 1021
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.307534563736191e-5
allele num: 30234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 8.71585e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.012e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

FS
type: SiteQuality
SIO_000300: 5.434e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.097e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

GenotypeQuality
all individuals: 1585
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.5e0
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GenotypeQuality
all individuals: 18417
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4346
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.59140610013428e-5
allele num: 10426
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 8.96798e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

QD
type: SiteQuality
SIO_000300: 9.75e0

FS
type: SiteQuality
SIO_000300: 1.0802e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

GenotypeQuality
all individuals: 419
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 7.5e0
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GenotypeQuality
all individuals: 26976
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variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.583161185863436e-5
allele num: 35822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

QD
type: SiteQuality
SIO_000300: 1.071e1

DP
type: SiteQuality
SIO_000300: 9.44387e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e-1

FS
type: SiteQuality
SIO_000300: 7.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 248
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 5.75e1
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GenotypeQuality
all individuals: 895
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 518
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26529
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.737925747453729e-5
allele num: 36524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 9.53604e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

FS
type: SiteQuality
SIO_000300: 2.942e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.244e0

QD
type: SiteQuality
SIO_000300: 7.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 3.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25847
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.675656873762509e-5
allele num: 37374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
SIO_000300: 6.04e0

QD
type: SiteQuality
SIO_000300: 1.22e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.731e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

DP
type: SiteQuality
SIO_000300: 9.66538e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 879
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.675656873762509e-5
allele num: 37374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11072
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

FS
type: SiteQuality
SIO_000300: 6.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.22e1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.731e0

DP
type: SiteQuality
SIO_000300: 9.66538e5

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.715854495538778e-4
allele num: 5828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.788e0

VQSLOD
type: SiteQuality
SIO_000300: -1.751e0

DP
type: SiteQuality
SIO_000300: 9.70697e5

GenotypeQuality
all individuals: 247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.148612829121753e-3
allele num: 11318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.548160228315156e-5
allele num: 39244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.166e1

FS
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

DP
type: SiteQuality
SIO_000300: 9.9036e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.224e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQ
type: SiteQuality
SIO_000300: 5.932e1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23369
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variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.557632398753894e-4
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

FS
type: SiteQuality
SIO_000300: 1.9572e1

MQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.07e-1

DP
type: SiteQuality
SIO_000300: 9.94961e5

QD
type: SiteQuality
SIO_000300: 1.264e1

VQSLOD
type: SiteQuality
SIO_000300: -3.005e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.621796951021732e-4
allele num: 6166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39622
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.264e1

DP
type: SiteQuality
SIO_000300: 9.94961e5

MQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

FS
type: SiteQuality
SIO_000300: 1.9572e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.005e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24325
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3396
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.746419839329375e-4
allele num: 11452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.331e1

MQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.99257e5

FS
type: SiteQuality
SIO_000300: 1.3338e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.122e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 23408
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5482
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

DP
type: SiteQuality
SIO_000300: 1.002209e6

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 5.54e0

VQSLOD
type: SiteQuality
SIO_000300: -2.005e0

GenotypeQuality
all individuals: 543
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 857
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GenotypeQuality
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GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 454
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.533272002453235e-4
allele num: 6522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.274490785645004e-5
allele num: 41240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

FS
type: SiteQuality
SIO_000300: 2.429e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

DP
type: SiteQuality
SIO_000300: 1.015793e6

QD
type: SiteQuality
SIO_000300: 1.314e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.15e-1

GenotypeQuality
all individuals: 465
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 23935
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.548469823901521e-5
allele num: 11698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.424830261881668e-5
allele num: 41240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.886836027713626e-4
allele num: 3464
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.429e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

DP
type: SiteQuality
SIO_000300: 1.015793e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 174
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 843
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 539
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.25e1
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GenotypeQuality
all individuals: 1332
bin: 3.25e1
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GenotypeQuality
all individuals: 460
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.405696689761355e-5
allele num: 41568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11734
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

FS
type: SiteQuality
SIO_000300: 5.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.693e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.095e1

MQ
type: SiteQuality
SIO_000300: 5.859e1

DP
type: SiteQuality
SIO_000300: 1.02366e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

GenotypeQuality
all individuals: 185
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 245
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2158
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
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variant carriers: 1

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

GenotypeQuality
all individuals: 22943
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6874
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 4.236050248320187e-3
allele num: 6846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

FS
type: SiteQuality
SIO_000300: 1.092e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.034784e6

QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeQuality
all individuals: 1445
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.311390532544379e-5
allele num: 43264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

QD
type: SiteQuality
SIO_000300: 1.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 1.092e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

DP
type: SiteQuality
SIO_000300: 1.034784e6

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 562
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 971
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22793
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6846
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.362602441879912e-5
allele num: 11958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3552
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.591e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 1.8325e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.027121e6

GenotypeQuality
all individuals: 875
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 1570
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variant carriers: 0

GenotypeQuality
all individuals: 195
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variant carriers: 0

GenotypeQuality
all individuals: 692
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variant carriers: 0

GenotypeQuality
all individuals: 467
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GenotypeQuality
all individuals: 410
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
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variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.181e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

FS
type: SiteQuality
SIO_000300: 1.275e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

QD
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

DP
type: SiteQuality
SIO_000300: 1.030682e6

GenotypeQuality
all individuals: 1429
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.25e1
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GenotypeQuality
all individuals: 873
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 24801
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variant carriers: 0

GenotypeQuality
all individuals: 462
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GenotypeQuality
all individuals: 541
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variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.441753171856978e-4
allele num: 6936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12048
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

DP
type: SiteQuality
SIO_000300: 1.030746e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.757e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.03e0

MQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.833e0

GenotypeQuality
all individuals: 873
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 6.75e1
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GenotypeQuality
all individuals: 164
bin: 1.25e1
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GenotypeQuality
all individuals: 234
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GenotypeQuality
all individuals: 1459
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.279254228016593e-5
allele num: 43874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3566
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

DP
type: SiteQuality
SIO_000300: 1.028787e6

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

GenotypeQuality
all individuals: 239
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 303
bin: 4.25e1
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GenotypeQuality
all individuals: 24252
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 24073
bin: 6.25e1
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GenotypeQuality
all individuals: 433
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GenotypeQuality
all individuals: 1543
bin: 3.25e1
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GenotypeQuality
all individuals: 872
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.284878672942467e-5
allele num: 43766
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12048
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.246e0

QD
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ReadPosRankSum
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VQSLOD
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SIO_000300: -3.659e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.039e0

FS
type: SiteQuality
SIO_000300: 2.246e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.0187e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

South Asian
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allele frequency: 8.348639171814995e-5
allele num: 11978
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 6850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43344
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3468
num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
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VQSLOD
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InbreedingCoeff
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DP
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SIO_000300: 1.003747e6

MQRankSum
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SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.484560570071259e-4
allele num: 6736
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele count: 39
allele frequency: 5.666957279860506e-3
allele num: 6882
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.159e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

BaseQRankSum
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SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

DP
type: SiteQuality
SIO_000300: 1.001929e6

FS
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 11956
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6670
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3436
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.395585738539898e-4
allele num: 5890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43294
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.94606e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

QD
type: SiteQuality
SIO_000300: 1.005e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

BaseQRankSum
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SIO_000300: -1.514e0

FS
type: SiteQuality
SIO_000300: 5.688e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.375184076765949e-5
allele num: 42102
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11646
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.311e0

MQRankSum
type: SiteQuality
SIO_000300: -4.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.461e1

DP
type: SiteQuality
SIO_000300: 9.35859e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.806536890170632e-5
allele num: 41610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

FS
type: SiteQuality
SIO_000300: 3.292e0

MQ
type: SiteQuality
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QD
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

VQSLOD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.35e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 1
allele frequency: 1.633986928104575e-4
allele num: 6120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41052
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South Asian
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
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MQRankSum
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QD
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VQSLOD
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DP
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.885e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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allele num: 11238
num of homozygotes: 0

Latino
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allele frequency: 1.640419947506562e-4
allele num: 6096
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African
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Other
type: Population
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East Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 40884
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European (Finnish)
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allele num: 3156
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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FS
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QD
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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Latino
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East Asian
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South Asian
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African
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European (Non-Finnish)
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allele count: 0
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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DP
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MQ
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 37412
num of homozygotes: 0

East Asian
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European (Finnish)
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African
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South Asian
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Latino
type: Population
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allele frequency: 1.889644746787604e-4
allele num: 5292
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Other
type: Population
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 862
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.672939163904629e-5
allele num: 37412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 1.694e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.439e0

DP
type: SiteQuality
SIO_000300: 7.52774e5

QD
type: SiteQuality
SIO_000300: 1.257e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

GenotypeQuality
all individuals: 3565
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4089
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.516632647432007e-5
allele num: 36254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.392e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.29067e5

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 7.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
all individuals: 236
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6044
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4130
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.02020202020202e-4
allele num: 4950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.22305e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

QD
type: SiteQuality
SIO_000300: 1.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.328e0

GenotypeQuality
all individuals: 1913
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3630
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 860
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.78955590270029e-5
allele num: 35848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.268e0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.16825e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.73e1

GenotypeQuality
all individuals: 31949
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2070
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.692491603574885e-5
allele num: 35134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.050640890943476e-4
allele num: 9518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

QD
type: SiteQuality
SIO_000300: 7.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 1.147e0

VQSLOD
type: SiteQuality
SIO_000300: -2.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.05771e5

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

GenotypeQuality
all individuals: 981
bin: 9.75e1
variant carriers: 138

GenotypeQuality
all individuals: 4299
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 27488
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 356
bin: 4.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3948
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 1.326259946949602e-3
allele num: 3770
num of homozygotes: 0

African
type: Population
allele count: 137
allele frequency: 2.64070932922128e-2
allele num: 5188
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.585489599188229e-4
allele num: 31536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

DP
type: SiteQuality
SIO_000300: 6.52378e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

QD
type: SiteQuality
SIO_000300: 1.401e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 1.481e0

GenotypeQuality
all individuals: 367
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21708
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.63901018922853e-5
allele num: 27480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.15833e5

VQSLOD
type: SiteQuality
SIO_000300: -2.861e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.54e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.202e0

QD
type: SiteQuality
SIO_000300: 3.01e0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 9.75e1
variant carriers: 9

South Asian
type: Population
allele count: 2
allele frequency: 2.767017155506364e-4
allele num: 7228
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.108647450110865e-3
allele num: 2706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4370
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.130870381966186e-4
allele num: 3194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.09809663250366e-4
allele num: 27320
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.15135e5

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.49e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 205
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 11208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22984
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 4477
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2066
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 367
bin: 4.75e1
variant carriers: 4

Other
type: Population
allele count: 1
allele frequency: 2.808988764044944e-3
allele num: 356
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 2.892263195950831e-3
allele num: 2766
num of homozygotes: 0

African
type: Population
allele count: 81
allele frequency: 1.825969341749324e-2
allele num: 4436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 55
allele frequency: 2.007592349248065e-3
allele num: 27396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7266
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 6.14372e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.507e1

VQSLOD
type: SiteQuality
SIO_000300: 5.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 5156
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4053
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21961
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1840
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4234
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.117206982543641e-4
allele num: 3208
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.07054e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.53e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.643e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.499e0

MQRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.953e1

GenotypeQuality
all individuals: 11415
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5531
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 7.374631268436578e-4
allele num: 4068
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

QD
type: SiteQuality
SIO_000300: 1.028e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

DP
type: SiteQuality
SIO_000300: 5.99913e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 7.474e0

GenotypeQuality
all individuals: 166
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11004
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 16742
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.064962726304579e-3
allele num: 1878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 2.103845830177565e-4
allele num: 23766
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 1.12739571589628e-3
allele num: 5322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2316
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 8.47457627118644e-4
allele num: 3540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.998e1

MQ
type: SiteQuality
SIO_000300: 5.887e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.047e0

DP
type: SiteQuality
SIO_000300: 5.99834e5

QD
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 6.5288e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

GenotypeQuality
all individuals: 19604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6726
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 900
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5376
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.857429409041814e-5
allele num: 25924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4140
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.042e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.09e-2

QD
type: SiteQuality
SIO_000300: 2.967e1

FS
type: SiteQuality
SIO_000300: 1.922e0

DP
type: SiteQuality
SIO_000300: 6.02588e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

VQSLOD
type: SiteQuality
SIO_000300: -3.131e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 644
bin: 5.75e1
variant carriers: 611

GenotypeQuality
all individuals: 596
bin: 7.75e1
variant carriers: 505

GenotypeQuality
all individuals: 7045
bin: 7.5e0
variant carriers: 507

GenotypeQuality
all individuals: 996
bin: 9.25e1
variant carriers: 941

GenotypeQuality
all individuals: 503
bin: 7.25e1
variant carriers: 402

GenotypeQuality
all individuals: 639
bin: 6.75e1
variant carriers: 438

GenotypeQuality
all individuals: 844
bin: 4.75e1
variant carriers: 679

GenotypeQuality
all individuals: 1601
bin: 3.75e1
variant carriers: 989

East Asian
type: Population
allele count: 93
allele frequency: 3.270042194092827e-2
allele num: 2844
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 764
allele frequency: 4.596871239470517e-1
allele num: 1662
num of homozygotes: 152

South Asian
type: Population
allele count: 2560
allele frequency: 3.605633802816902e-1
allele num: 7100
num of homozygotes: 447

European (Non-Finnish)
type: Population
allele count: 13869
allele frequency: 4.931375337789788e-1
allele num: 28124
num of homozygotes: 3145

African
type: Population
allele count: 454
allele frequency: 1.086124401913876e-1
allele num: 4180
num of homozygotes: 22

Other
type: Population
allele count: 108
allele frequency: 3.176470588235294e-1
allele num: 340
num of homozygotes: 21

Latino
type: Population
allele count: 565
allele frequency: 2.247414478918059e-1
allele num: 2514
num of homozygotes: 56

DP
type: SiteQuality
SIO_000300: 6.38473e5

FS
type: SiteQuality
SIO_000300: 6.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.745e-1

QD
type: SiteQuality
SIO_000300: 2.098e1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
all individuals: 201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11389
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5755
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 5.93104e5

GenotypeQuality
all individuals: 6031
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5618
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

DP
type: SiteQuality
SIO_000300: 5.9296e5

QD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

GenotypeQuality
all individuals: 542
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11580
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 410
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.041710451863228e-5
allele num: 24742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

FS
type: SiteQuality
SIO_000300: 1.469e0

QD
type: SiteQuality
SIO_000300: 1.196e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.794e0

DP
type: SiteQuality
SIO_000300: 5.94091e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 11580
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4245
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 6.422607578676942e-4
allele num: 6228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4190
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2838
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.64e-2

FS
type: SiteQuality
SIO_000300: 1.469e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.794e0

MQRankSum
type: SiteQuality
SIO_000300: -7.79e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 5.94091e5

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.066693777958519e-5
allele num: 24590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e0

DP
type: SiteQuality
SIO_000300: 5.91796e5

VQSLOD
type: SiteQuality
SIO_000300: -4.206e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.331e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.29e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.372e0

QD
type: SiteQuality
SIO_000300: 6.68e0

GenotypeQuality
all individuals: 3991
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17326
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 5.90034e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.067e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5759
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5682
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.057971014492754e-5
allele num: 11040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 4.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.942e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.461257e6

VQSLOD
type: SiteQuality
SIO_000300: 2.16e-1

GenotypeQuality
all individuals: 3278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3203
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5671
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2065
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.062896501721951e-5
allele num: 11034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 8.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.143e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

DP
type: SiteQuality
SIO_000300: 1.463142e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

GenotypeQuality
all individuals: 1916
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5944
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5683
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 22142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.643115346697338e-5
allele num: 60860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11064
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.126887536623845e-4
allele num: 8874
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

FS
type: SiteQuality
SIO_000300: 8.720000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.493508e6

GenotypeQuality
all individuals: 419
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22731
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.048136083966703e-5
allele num: 11052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.281485856795957e-5
allele num: 60948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.855e0

VQSLOD
type: SiteQuality
SIO_000300: -1.382e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 2.231e1

DP
type: SiteQuality
SIO_000300: 1.498716e6

GenotypeQuality
all individuals: 2797
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4928
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 23522
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.802776275464215e-4
allele num: 11094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13072
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.889e0

VQSLOD
type: SiteQuality
SIO_000300: 3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.508234e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
all individuals: 342
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5694
bin: 9.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.730984967466906e-4
allele num: 8914
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

QD
type: SiteQuality
SIO_000300: 1.256e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

FS
type: SiteQuality
SIO_000300: 3.616e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.516749e6

GenotypeQuality
all individuals: 364
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.276217934016971e-5
allele num: 61046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.915e0

FS
type: SiteQuality
SIO_000300: 1.469e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 8.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

DP
type: SiteQuality
SIO_000300: 1.523177e6

GenotypeQuality
all individuals: 977
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5685
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2182
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.246686137946529e-4
allele num: 8902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

FS
type: SiteQuality
SIO_000300: 1.469e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.915e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.82e0

DP
type: SiteQuality
SIO_000300: 1.523177e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 143
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5691
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.635162535155994e-5
allele num: 61156
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.578053955744165e-5
allele num: 13196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: -8.036e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

QD
type: SiteQuality
SIO_000300: 1.401e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

FS
type: SiteQuality
SIO_000300: 1.0768e1

DP
type: SiteQuality
SIO_000300: 1.528457e6

GenotypeQuality
all individuals: 824
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.515610791148833e-4
allele num: 13196
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

QD
type: SiteQuality
SIO_000300: 1.401e1

DP
type: SiteQuality
SIO_000300: 1.528457e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: -8.036e-1

FS
type: SiteQuality
SIO_000300: 1.0768e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

GenotypeQuality
all individuals: 301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5698
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 25473
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.267012970041491e-5
allele num: 61218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

FS
type: SiteQuality
SIO_000300: 1.378e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

DP
type: SiteQuality
SIO_000300: 1.532191e6

GenotypeQuality
all individuals: 1061
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5698
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2365
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.267012970041491e-5
allele num: 61218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13246
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1