http://identifiers.org/exac.variant/20-42168834-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168834
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168834
    reference: chr 20
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2737C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.1962C>A
  hgvsp: ENST00000373134.1:c.1962C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.44C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1220C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2151C>A
  hgvsp: ENST00000427442.2:c.2151C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1947C>A
  hgvsp: ENST00000373135.3:c.1947C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2151C>A
  hgvsp: ENST00000418998.1:c.2151C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1947C>A
  hgvsp: ENST00000444063.1:c.1947C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1305C>A
  hgvsp: ENST00000422861.1:c.1305C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala717Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

20-42168836-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168836
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168836
    reference: chr 20
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.46T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1949T>C
  hgvsp: ENSP00000403316.1:p.Leu650Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2153T>C
  hgvsp: ENSP00000398516.1:p.Leu718Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1222T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.1964T>C
  hgvsp: ENSP00000362226.1:p.Leu655Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1307T>C
  hgvsp: ENSP00000410139.1:p.Leu436Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1949T>C
  hgvsp: ENSP00000362227.3:p.Leu650Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2739T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2153T>C
  hgvsp: ENSP00000402107.2:p.Leu718Pro
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu718Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

20-42168839-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168839
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168839
    reference: chr 20
allele count: 8
allele frequency: 6.605674274201539e-5
allele num: 121108
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2156C>T
  hgvsp: ENSP00000402107.2:p.Ser719Leu
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1952C>T
  hgvsp: ENSP00000403316.1:p.Ser651Leu
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1225C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1310C>T
  hgvsp: ENSP00000410139.1:p.Ser437Leu
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.1967C>T
  hgvsp: ENSP00000362226.1:p.Ser656Leu
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1952C>T
  hgvsp: ENSP00000362227.3:p.Ser651Leu
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.49C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2742C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2156C>T
  hgvsp: ENSP00000398516.1:p.Ser719Leu
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5101
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 45867
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser719Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

20-42168840-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168840
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168840
    reference: chr 20
allele count: 1
allele frequency: 8.257501940512956e-6
allele num: 121102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1226G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2157G>A
  hgvsp: ENST00000427442.2:c.2157G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1953G>A
  hgvsp: ENST00000373135.3:c.1953G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1311G>A
  hgvsp: ENST00000422861.1:c.1311G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.1968G>A
  hgvsp: ENST00000373134.1:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2743G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.50G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1953G>A
  hgvsp: ENST00000444063.1:c.1953G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2157G>A
  hgvsp: ENST00000418998.1:c.2157G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser719Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

20-42168853-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168853
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168853
    reference: chr 20
allele count: 4
allele frequency: 3.301474108189306e-5
allele num: 121158
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2170C>G
  hgvsp: ENSP00000402107.2:p.Arg724Gly
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2170C>G
  hgvsp: ENSP00000398516.1:p.Arg724Gly
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1324C>G
  hgvsp: ENSP00000410139.1:p.Arg442Gly
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1966C>G
  hgvsp: ENSP00000362227.3:p.Arg656Gly
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.1981C>G
  hgvsp: ENSP00000362226.1:p.Arg661Gly
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1239C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1966C>G
  hgvsp: ENSP00000403316.1:p.Arg656Gly
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2756C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.63C>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg724Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

20-42168853-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168853
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168853
    reference: chr 20
allele count: 8
allele frequency: 6.602948216378613e-5
allele num: 121158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1324C>T
  hgvsp: ENSP00000410139.1:p.Arg442Cys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.63C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2170C>T
  hgvsp: ENSP00000398516.1:p.Arg724Cys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.1981C>T
  hgvsp: ENSP00000362226.1:p.Arg661Cys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1966C>T
  hgvsp: ENSP00000403316.1:p.Arg656Cys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1239C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2170C>T
  hgvsp: ENSP00000402107.2:p.Arg724Cys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1966C>T
  hgvsp: ENSP00000362227.3:p.Arg656Cys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2756C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40944
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg724Cys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

20-42168854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168854
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168854
    reference: chr 20
allele count: 1
allele frequency: 8.253549026081216e-6
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1240G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2171G>A
  hgvsp: ENSP00000402107.2:p.Arg724His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2171G>A
  hgvsp: ENSP00000398516.1:p.Arg724His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1967G>A
  hgvsp: ENSP00000403316.1:p.Arg656His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.64G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.1982G>A
  hgvsp: ENSP00000362226.1:p.Arg661His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1325G>A
  hgvsp: ENSP00000410139.1:p.Arg442His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1967G>A
  hgvsp: ENSP00000362227.3:p.Arg656His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2757G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg724His
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

20-42168867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168867
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168867
    reference: chr 20
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.1995G>A
  hgvsp: ENST00000373134.1:c.1995G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1253G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1338G>A
  hgvsp: ENST00000422861.1:c.1338G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1980G>A
  hgvsp: ENST00000444063.1:c.1980G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2770G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2184G>A
  hgvsp: ENST00000418998.1:c.2184G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2184G>A
  hgvsp: ENST00000427442.2:c.2184G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1980G>A
  hgvsp: ENST00000373135.3:c.1980G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.77G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40906
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val728Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

20-42168876-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168876
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168876
    reference: chr 20
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2004G>A
  hgvsp: ENST00000373134.1:c.2004G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1989G>A
  hgvsp: ENST00000444063.1:c.1989G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1989G>A
  hgvsp: ENST00000373135.3:c.1989G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2193G>A
  hgvsp: ENST00000418998.1:c.2193G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1347G>A
  hgvsp: ENST00000422861.1:c.1347G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2779G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2193G>A
  hgvsp: ENST00000427442.2:c.2193G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.86G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1262G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu731Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

20-42168879-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168879
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168879
    reference: chr 20
allele count: 921
allele frequency: 7.598508349283876e-3
allele num: 121208
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2196G>A
  hgvsp: ENST00000427442.2:c.2196G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1265G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.1992G>A
  hgvsp: ENST00000373135.3:c.1992G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2196G>A
  hgvsp: ENST00000418998.1:c.2196G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2782G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.1992G>A
  hgvsp: ENST00000444063.1:c.1992G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2007G>A
  hgvsp: ENST00000373134.1:c.2007G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.89G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1350G>A
  hgvsp: ENST00000422861.1:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40252
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 12708
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln732Gln
num of homozygotes: 21
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

20-42168906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168906
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168906
    reference: chr 20
allele count: 4
allele frequency: 3.299567756623883e-5
allele num: 121228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.116G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2223G>A
  hgvsp: ENST00000418998.1:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2019G>A
  hgvsp: ENST00000444063.1:c.2019G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1292G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2034G>A
  hgvsp: ENST00000373134.1:c.2034G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1377G>A
  hgvsp: ENST00000422861.1:c.1377G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2809G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2019G>A
  hgvsp: ENST00000373135.3:c.2019G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2223G>A
  hgvsp: ENST00000427442.2:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala741Ala
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

20-42168909-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168909
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168909
    reference: chr 20
allele count: 1
allele frequency: 8.248783304462591e-6
allele num: 121230
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2226C>T
  hgvsp: ENST00000427442.2:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2226C>T
  hgvsp: ENST00000418998.1:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2022C>T
  hgvsp: ENST00000444063.1:c.2022C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2812C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.119C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2037C>T
  hgvsp: ENST00000373134.1:c.2037C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1380C>T
  hgvsp: ENST00000422861.1:c.1380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2022C>T
  hgvsp: ENST00000373135.3:c.2022C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1295C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2174
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly742Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

20-42168921-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168921
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168921
    reference: chr 20
allele count: 2
allele frequency: 1.649919978881024e-5
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2824G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2238G>A
  hgvsp: ENST00000418998.1:c.2238G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2034G>A
  hgvsp: ENST00000444063.1:c.2034G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.131G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1307G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1392G>A
  hgvsp: ENST00000422861.1:c.1392G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2238G>A
  hgvsp: ENST00000427442.2:c.2238G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2034G>A
  hgvsp: ENST00000373135.3:c.2034G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2049G>A
  hgvsp: ENST00000373134.1:c.2049G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45701
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser746Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

20-42168927-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168927
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168927
    reference: chr 20
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2040C>T
  hgvsp: ENST00000444063.1:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1398C>T
  hgvsp: ENST00000422861.1:c.1398C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2830C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1313C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2244C>T
  hgvsp: ENST00000418998.1:c.2244C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2244C>T
  hgvsp: ENST00000427442.2:c.2244C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2040C>T
  hgvsp: ENST00000373135.3:c.2040C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.137C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2055C>T
  hgvsp: ENST00000373134.1:c.2055C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val748Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

20-42168939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168939
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168939
    reference: chr 20
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2067C>T
  hgvsp: ENST00000373134.1:c.2067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.149C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2052C>T
  hgvsp: ENST00000373135.3:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1325C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1410C>T
  hgvsp: ENST00000422861.1:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2256C>T
  hgvsp: ENST00000418998.1:c.2256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2052C>T
  hgvsp: ENST00000444063.1:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2256C>T
  hgvsp: ENST00000427442.2:c.2256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2842C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr752Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

20-42168940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168940
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168940
    reference: chr 20
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2068A>G
  hgvsp: ENSP00000362226.1:p.Ile690Val
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2843A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2053A>G
  hgvsp: ENSP00000403316.1:p.Ile685Val
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1411A>G
  hgvsp: ENSP00000410139.1:p.Ile471Val
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.150A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2053A>G
  hgvsp: ENSP00000362227.3:p.Ile685Val
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2257A>G
  hgvsp: ENSP00000402107.2:p.Ile753Val
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2257A>G
  hgvsp: ENSP00000398516.1:p.Ile753Val
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1326A>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile753Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

20-42168943-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168943
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168943
    reference: chr 20
allele count: 1
allele frequency: 8.254911672445104e-6
allele num: 121140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2260G>A
  hgvsp: ENSP00000398516.1:p.Asp754Asn
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2056G>A
  hgvsp: ENSP00000362227.3:p.Asp686Asn
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.153G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2260G>A
  hgvsp: ENSP00000402107.2:p.Asp754Asn
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1414G>A
  hgvsp: ENSP00000410139.1:p.Asp472Asn
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2056G>A
  hgvsp: ENSP00000403316.1:p.Asp686Asn
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2071G>A
  hgvsp: ENSP00000362226.1:p.Asp691Asn
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2846G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1329G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp754Asn
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

20-42168945-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168945
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168945
    reference: chr 20
allele count: 2
allele frequency: 1.651036851142517e-5
allele num: 121136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2058T>C
  hgvsp: ENST00000444063.1:c.2058T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1416T>C
  hgvsp: ENST00000422861.1:c.1416T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.155T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2262T>C
  hgvsp: ENST00000418998.1:c.2262T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2262T>C
  hgvsp: ENST00000427442.2:c.2262T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2848T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2058T>C
  hgvsp: ENST00000373135.3:c.2058T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2073T>C
  hgvsp: ENST00000373134.1:c.2073T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1331T>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp754Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

20-42168950-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168950
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168950
    reference: chr 20
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+2T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+2T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+2T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+2T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+2T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+2T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+2T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+2T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+2T>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: c.2265+2T>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

20-42168957-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168957
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168957
    reference: chr 20
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+9C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+9C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+9C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+9C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+9C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+9C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+9C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+9C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+9C>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

20-42168957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168957
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168957
    reference: chr 20
allele count: 4
allele frequency: 3.308355251186872e-5
allele num: 120906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+9C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

20-42168958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168958
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168958
    reference: chr 20
allele count: 65
allele frequency: 5.37776748188106e-4
allele num: 120868
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+10G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 39482
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7196
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.75e1
  variant carriers: 65
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP

20-42168964-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168964
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168964
    reference: chr 20
allele count: 2
allele frequency: 1.659007581664648e-5
allele num: 120554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+16C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+16C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+16C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+16C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+16C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+16C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+16C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+16C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+16C>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6827
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43109
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

20-42168965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168965
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168965
    reference: chr 20
allele count: 1
allele frequency: 8.296001327360212e-6
allele num: 120540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+17C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

20-42168967-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168967
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168967
    reference: chr 20
allele count: 2
allele frequency: 1.659117681217129e-5
allele num: 120546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+19T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+19T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+19T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+19T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+19T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+19T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+19T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+19T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+19T>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

20-42168969-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168969
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168969
    reference: chr 20
allele count: 1
allele frequency: 8.29737802854298e-6
allele num: 120520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+21T>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+21T>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+21T>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+21T>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+21T>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+21T>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+21T>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+21T>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+21T>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

20-42168973-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168973
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168973
    reference: chr 20
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+25T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+25T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+25T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+25T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+25T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+25T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+25T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+25T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+25T>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

20-42168974-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168974
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168974
    reference: chr 20
allele count: 1
allele frequency: 8.309788931361144e-6
allele num: 120340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+26C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+26C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+26C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+26C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+26C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+26C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+26C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+26C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+26C>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

20-42168983-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168983
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168983
    reference: chr 20
allele count: 1
allele frequency: 8.339448929214757e-6
allele num: 119912
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+35C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+35C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+35C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+35C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+35C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+35C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+35C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+35C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+35C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

20-42168996-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42168996
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42168996
    reference: chr 20
allele count: 1
allele frequency: 8.408024618696084e-6
allele num: 118934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+48C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+48C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+48C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+48C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+48C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+48C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+48C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+48C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+48C>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35932
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

20-42169000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169000
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169000
    reference: chr 20
allele count: 1
allele frequency: 8.425025696328374e-6
allele num: 118694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2076+52C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2265+52C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1419+52C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1334+52C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2061+52C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+52C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2851+52C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2061+52C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2265+52C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

20-42169346-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169346
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169346
    reference: chr 20
allele count: 1
allele frequency: 8.312690152787244e-6
allele num: 120298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+398T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2266-47T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1420-47T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2062-47T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2266-47T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1335-47T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2852-47T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2077-47T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2062-47T>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

20-42169353-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169353
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169353
    reference: chr 20
allele count: 605
allele frequency: 5.028508735475506e-3
allele num: 120314
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2266-40G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2852-40G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2077-40G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+405G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2062-40G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2266-40G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1420-40G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2062-40G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1335-40G>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 3.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19593
  bin: 2.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 22660
  bin: 2.75e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 10
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

20-42169357-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169357
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169357
    reference: chr 20
allele count: 1
allele frequency: 8.307303781484682e-6
allele num: 120376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1420-36T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2062-36T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2266-36T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2077-36T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2852-36T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+409T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2062-36T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2266-36T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1335-36T>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/20-42169360-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169360
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169360
    reference: chr 20
allele count: 1
allele frequency: 8.3099270388406e-6
allele num: 120338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2062-33C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2062-33C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+412C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1420-33C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2266-33C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2077-33C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2852-33C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2266-33C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1335-33C>A
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

20-42169360-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169360
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169360
    reference: chr 20
allele count: 3
allele frequency: 2.49297811165218e-5
allele num: 120338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1420-33C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2266-33C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2077-33C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2266-33C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2062-33C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+412C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2062-33C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1335-33C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2852-33C>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21114
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23352
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

20-42169363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169363
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169363
    reference: chr 20
allele count: 1
allele frequency: 8.304268393954492e-6
allele num: 120420
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2266-30C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2266-30C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+415C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2077-30C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2852-30C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2062-30C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1420-30C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2062-30C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1335-30C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

20-42169366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169366
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169366
    reference: chr 20
allele count: 1
allele frequency: 8.298892927683448e-6
allele num: 120498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2062-27G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1420-27G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2062-27G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1335-27G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+418G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2852-27G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2077-27G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2266-27G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2266-27G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

20-42169370-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169370
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169370
    reference: chr 20
allele count: 1
allele frequency: 8.292836647703714e-6
allele num: 120586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2852-23A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2062-23A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2077-23A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2266-23A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1420-23A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2062-23A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1335-23A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+422A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2266-23A>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS

20-42169378-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169378
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169378
    reference: chr 20
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2266-15T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2077-15T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1335-15T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2062-15T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1420-15T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2852-15T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+430T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2266-15T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2062-15T>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

20-42169398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169398
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169398
    reference: chr 20
allele count: 3
allele frequency: 2.480117722921248e-5
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1425C>T
  hgvsp: ENST00000422861.1:c.1425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2271C>T
  hgvsp: ENST00000418998.1:c.2271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2082C>T
  hgvsp: ENST00000373134.1:c.2082C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1340C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+450C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2067C>T
  hgvsp: ENST00000444063.1:c.2067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2857C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2271C>T
  hgvsp: ENST00000427442.2:c.2271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2067C>T
  hgvsp: ENST00000373135.3:c.2067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25278
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe757Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

20-42169418-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169418
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169418
    reference: chr 20
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2291C>G
  hgvsp: ENSP00000398516.1:p.Thr764Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1360C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2291C>G
  hgvsp: ENSP00000402107.2:p.Thr764Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2877C>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1445C>G
  hgvsp: ENSP00000410139.1:p.Thr482Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2102C>G
  hgvsp: ENSP00000362226.1:p.Thr701Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2087C>G
  hgvsp: ENSP00000362227.3:p.Thr696Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2087C>G
  hgvsp: ENSP00000403316.1:p.Thr696Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+470C>G
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr764Arg
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

20-42169422-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169422
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169422
    reference: chr 20
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2091T>C
  hgvsp: ENST00000373135.3:c.2091T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2091T>C
  hgvsp: ENST00000444063.1:c.2091T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1449T>C
  hgvsp: ENST00000422861.1:c.1449T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2295T>C
  hgvsp: ENST00000418998.1:c.2295T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1364T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2295T>C
  hgvsp: ENST00000427442.2:c.2295T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2106T>C
  hgvsp: ENST00000373134.1:c.2106T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2881T>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+474T>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly765Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD

20-42169439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169439
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169439
    reference: chr 20
allele count: 2
allele frequency: 1.656561640658649e-5
allele num: 120732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2108G>A
  hgvsp: ENSP00000362227.3:p.Arg703His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2312G>A
  hgvsp: ENSP00000402107.2:p.Arg771His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2898G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+491G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2123G>A
  hgvsp: ENSP00000362226.1:p.Arg708His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2312G>A
  hgvsp: ENSP00000398516.1:p.Arg771His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2108G>A
  hgvsp: ENSP00000403316.1:p.Arg703His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1466G>A
  hgvsp: ENSP00000410139.1:p.Arg489His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1381G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg771His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ

20-42169439-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169439
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169439
    reference: chr 20
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2312G>C
  hgvsp: ENSP00000398516.1:p.Arg771Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2108G>C
  hgvsp: ENSP00000403316.1:p.Arg703Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2123G>C
  hgvsp: ENSP00000362226.1:p.Arg708Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2312G>C
  hgvsp: ENSP00000402107.2:p.Arg771Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2898G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2108G>C
  hgvsp: ENSP00000362227.3:p.Arg703Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+491G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1466G>C
  hgvsp: ENSP00000410139.1:p.Arg489Pro
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1381G>C
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg771Pro
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

20-42169452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169452
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169452
    reference: chr 20
allele count: 3
allele frequency: 2.494346148729547e-5
allele num: 120272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1479C>T
  hgvsp: ENST00000422861.1:c.1479C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1394C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2325C>T
  hgvsp: ENST00000418998.1:c.2325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2136C>T
  hgvsp: ENST00000373134.1:c.2136C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2121C>T
  hgvsp: ENST00000373135.3:c.2121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2121C>T
  hgvsp: ENST00000444063.1:c.2121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2325C>T
  hgvsp: ENST00000427442.2:c.2325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2911C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+504C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40109
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp775Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

20-42169453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169453
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169453
    reference: chr 20
allele count: 2
allele frequency: 1.664087331303147e-5
allele num: 120186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+505G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2122G>A
  hgvsp: ENSP00000362227.3:p.Glu708Lys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2137G>A
  hgvsp: ENSP00000362226.1:p.Glu713Lys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1395G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1480G>A
  hgvsp: ENSP00000410139.1:p.Glu494Lys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2326G>A
  hgvsp: ENSP00000398516.1:p.Glu776Lys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2326G>A
  hgvsp: ENSP00000402107.2:p.Glu776Lys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2122G>A
  hgvsp: ENSP00000403316.1:p.Glu708Lys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2912G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu776Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

20-42169464-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169464
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169464
    reference: chr 20
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2133C>T
  hgvsp: ENST00000444063.1:c.2133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2923C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2148C>T
  hgvsp: ENST00000373134.1:c.2148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+516C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys711Cys
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

20-42169467-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169467
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169467
    reference: chr 20
allele count: 2
allele frequency: 1.676080653001022e-5
allele num: 119326
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+12G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+12G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2151G>T
  hgvsp: ENSP00000362226.1:p.Lys717Asn
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2136G>T
  hgvsp: ENSP00000403316.1:p.Lys712Asn
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+12G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+12G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+12G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+519G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2926G>T
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18982
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35891
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys712Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

20-42169472-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169472
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169472
    reference: chr 20
allele count: 1
allele frequency: 8.407741848694278e-6
allele num: 118938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2156G>A
  hgvsp: ENSP00000362226.1:p.Arg719Lys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+17G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+17G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2141G>A
  hgvsp: ENSP00000403316.1:p.Arg714Lys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+524G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2931G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+17G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+17G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+17G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg714Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

20-42169474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169474
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169474
    reference: chr 20
allele count: 2
allele frequency: 1.685005139265675e-5
allele num: 118694
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+19G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2158G>A
  hgvsp: ENSP00000362226.1:p.Val720Met
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+19G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+19G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+526G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2143G>A
  hgvsp: ENSP00000403316.1:p.Val715Met
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+19G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2933G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+19G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17837
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33017
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val715Met
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

20-42169476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169476
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169476
    reference: chr 20
allele count: 1
allele frequency: 8.443949066099234e-6
allele num: 118428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+528G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2160G>A
  hgvsp: ENST00000373134.1:c.2160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+21G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+21G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+21G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2145G>A
  hgvsp: ENST00000444063.1:c.2145G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2935G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+21G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+21G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20600
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5826
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val715Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

20-42169488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169488
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169488
    reference: chr 20
allele count: 8
allele frequency: 6.817445843914578e-5
allele num: 117346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+540C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+33C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+33C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2947C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2172C>T
  hgvsp: ENST00000373134.1:c.2172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2157C>T
  hgvsp: ENST00000444063.1:c.2157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+33C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+33C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+33C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16348
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17270
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala719Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

20-42169489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169489
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169489
    reference: chr 20
allele count: 5
allele frequency: 4.272773884806016e-5
allele num: 117020
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+34G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+34G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+541G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2948G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2158G>A
  hgvsp: ENSP00000403316.1:p.Gly720Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+34G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2173G>A
  hgvsp: ENSP00000362226.1:p.Gly725Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+34G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+34G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7582
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17396
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16049
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly720Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

20-42169492-G-GTCACTGTCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169492
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169502
    reference: chr 20
allele count: 2
allele frequency: 1.707737759789607e-5
allele num: 117114
alternate allele: GTCACTGTCCT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsp: ENSP00000362226.1:p.Lys730HisfsTer4
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsp: ENSP00000403316.1:p.Lys725HisfsTer4
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17351
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3506
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys730HisfsTer4
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

20-42169492-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169492
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169492
    reference: chr 20
allele count: 3
allele frequency: 2.56160663968441e-5
allele num: 117114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2161G>T
  hgvsp: ENSP00000403316.1:p.Val721Phe
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+37G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2176G>T
  hgvsp: ENSP00000362226.1:p.Val726Phe
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+37G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+544G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2951G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+37G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+37G>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+37G>T
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15373
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4845
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val721Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

20-42169505-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169505
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169505
    reference: chr 20
allele count: 1
allele frequency: 8.62128422649838e-6
allele num: 115992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+557A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2174A>G
  hgvsp: ENSP00000403316.1:p.Lys725Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+50A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+50A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+50A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2964A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2189A>G
  hgvsp: ENSP00000362226.1:p.Lys730Arg
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+50A>G
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+50A>G
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15491
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys725Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

20-42169508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169508
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169508
    reference: chr 20
allele count: 1
allele frequency: 8.662058451570432e-6
allele num: 115446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+53C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+53C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2192C>T
  hgvsp: ENSP00000362226.1:p.Thr731Met
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2967C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+560C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2177C>T
  hgvsp: ENSP00000403316.1:p.Thr726Met
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+53C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+53C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+53C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11714
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7240
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr726Met
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

20-42169509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169509
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169509
    reference: chr 20
allele count: 15
allele frequency: 1.299016211722322e-4
allele num: 115472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1397+54G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2193G>A
  hgvsp: ENST00000373134.1:c.2193G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+561G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2178G>A
  hgvsp: ENST00000444063.1:c.2178G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2328+54G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2968G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+54G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2124+54G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2328+54G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15697
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10758
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11725
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11681
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr726Thr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

20-42169521-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169521
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169521
    reference: chr 20
allele count: 1
allele frequency: 8.691722003963425e-6
allele num: 115052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-53G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+573G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2980G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-53G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+66G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-53G>C
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2205G>C
  hgvsp: ENSP00000362226.1:p.Arg735Ser
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2190G>C
  hgvsp: ENSP00000403316.1:p.Arg730Ser
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-53G>C
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10406
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7446
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg730Ser
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

20-42169534-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169534
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169534
    reference: chr 20
allele count: 1
allele frequency: 8.727069624561465e-6
allele num: 114586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2993C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-40C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-40C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2218C>T
  hgvsp: ENSP00000362226.1:p.Arg740Cys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+586C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2203C>T
  hgvsp: ENSP00000403316.1:p.Arg735Cys
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-40C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+79C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-40C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18485
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg735Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

20-42169535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169535
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169535
    reference: chr 20
allele count: 3
allele frequency: 2.618395098364376e-5
allele num: 114574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-39G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2994G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+587G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2204G>A
  hgvsp: ENSP00000403316.1:p.Arg735His
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-39G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-39G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-39G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+80G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2219G>A
  hgvsp: ENSP00000362226.1:p.Arg740His
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10304
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18938
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4986
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4040
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg735His
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/20-42169538-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169538
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169537
    reference: chr 20
allele count: 1
allele frequency: 8.696559641006019e-6
allele num: 114988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.2208delC
  hgvsp: ENSP00000403316.1:p.Phe737SerfsTer76
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-35delC
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-35delC
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+591delC
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.2998delC
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+84delC
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-35delC
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-35delC
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.2223delC
  hgvsp: ENSP00000362226.1:p.Phe742SerfsTer76
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4734
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3667
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe737SerfsTer76
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: AC
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

20-42169550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169550
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169550
    reference: chr 20
allele count: 1
allele frequency: 8.659808098652533e-6
allele num: 115476
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-24G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+602G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+95G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-24G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-24G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-24G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.3009G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23895
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

20-42169552-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169552
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169552
    reference: chr 20
allele count: 1
allele frequency: 8.649920420732129e-6
allele num: 115608
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-22G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-22G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.3011G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+604G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+97G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-22G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-22G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24274
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/20-42169556-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169556
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169556
    reference: chr 20
allele count: 12
allele frequency: 1.035911602209945e-4
allele num: 115840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-18C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-18C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-18C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-18C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.3015C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+608C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.*8C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+101C>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.*8C>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24597
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11996
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1914
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

20-42169557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169557
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169557
    reference: chr 20
allele count: 128
allele frequency: 1.104076457294668e-3
allele num: 115934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+609C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+102C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.3016C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-17C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-17C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24781
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12164
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 3
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

20-42169558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169558
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169558
    reference: chr 20
allele count: 2
allele frequency: 1.725238514224592e-5
allele num: 115926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.3017C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-16C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-16C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-16C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+103C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+610C>T
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-16C>T
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12433
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS

20-42169559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169559
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169559
    reference: chr 20
allele count: 25
allele frequency: 2.152166801535786e-4
allele num: 116162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-15G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.3018G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-15G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+611G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-15G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-15G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+104G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25607
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5062
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

20-42169564-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42169564
    reference: chr 20
  end: Position
    type: ExactPosition
    position: 42169564
    reference: chr 20
allele count: 74
allele frequency: 6.344198487680253e-4
allele num: 116642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000403316
  ensembl transcript: ENST00000444063
  gene symbol: L3MBTL1
  hgvsc: ENST00000444063.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000471977
  gene symbol: L3MBTL1
  hgvsc: ENST00000471977.2:n.158+616G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362226
  ensembl transcript: ENST00000373134
  gene symbol: L3MBTL1
  hgvsc: ENST00000373134.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000398516
  ensembl transcript: ENST00000418998
  gene symbol: L3MBTL1
  hgvsc: ENST00000418998.1:c.2329-10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000362227
  ensembl transcript: ENST00000373135
  gene symbol: L3MBTL1
  hgvsc: ENST00000373135.3:c.2125-10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000373133
  gene symbol: L3MBTL1
  hgvsc: ENST00000373133.1:n.3023G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000402107
  ensembl transcript: ENST00000427442
  gene symbol: L3MBTL1
  hgvsc: ENST00000427442.2:c.2329-10G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl protein: ENSP00000410139
  ensembl transcript: ENST00000422861
  gene symbol: L3MBTL1
  hgvsc: ENST00000422861.1:c.1482+109G>A
  variant of: http://identifiers.org/hgnc/15905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000185513
  ensembl transcript: ENST00000494117
  gene symbol: L3MBTL1
  hgvsc: ENST00000494117.1:n.1398-10G>A
  variant of: http://identifiers.org/hgnc/15905
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13042
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27112
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 2
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45881
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: -2.809e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

FS
type: SiteQuality
SIO_000300: 8.100000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.241e0

DP
type: SiteQuality
SIO_000300: 1.455468e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.838e0

GenotypeQuality
all individuals: 1239
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7223
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.203e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 1.455876e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

FS
type: SiteQuality
SIO_000300: 2.928e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.111e0

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.52e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423654871546292e-4
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004717406327935e-5
allele num: 66562
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.577e0

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.291e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.24e-1

DP
type: SiteQuality
SIO_000300: 1.456454e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-2

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.72e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 3.71e0

FS
type: SiteQuality
SIO_000300: 1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.456441e6

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.50558692779046e-5
allele num: 66584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

DP
type: SiteQuality
SIO_000300: 1.458209e6

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.375e1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45902
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.853564547206166e-4
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.007449237053947e-5
allele num: 66584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.375e1

FS
type: SiteQuality
SIO_000300: 1.108e0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.458209e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

DP
type: SiteQuality
SIO_000300: 1.458188e6

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.898e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.109999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -4.126e0

DP
type: SiteQuality
SIO_000300: 1.458423e6

VQSLOD
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SIO_000300: -1.141e0

MQRankSum
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SIO_000300: -1.851e0

QD
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SIO_000300: 1.259e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 451
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 6.96e-1

BaseQRankSum
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SIO_000300: -4.68e0

DP
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SIO_000300: 1.459012e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
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SIO_000300: 1.469e1

MQRankSum
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SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35
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European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.801531301606365e-4
allele num: 66610
num of homozygotes: 0

East Asian
type: Population
allele count: 302
allele frequency: 3.497799397729905e-2
allele num: 8634
num of homozygotes: 7

Other
type: Population
allele count: 8
allele frequency: 8.869179600886918e-3
allele num: 902
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 17
allele frequency: 2.574977279612239e-3
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926040061633282e-4
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 387
allele frequency: 3.345435684647303e-2
allele num: 11568
num of homozygotes: 9

South Asian
type: Population
allele count: 193
allele frequency: 1.169130118730313e-2
allele num: 16508
num of homozygotes: 4

QD
type: SiteQuality
SIO_000300: 1.367e1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
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SIO_000300: 4.19e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -3.55e0

VQSLOD
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SIO_000300: 6.19e0

DP
type: SiteQuality
SIO_000300: 1.50493e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314814814814815e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002732486562772e-5
allele num: 66606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

DP
type: SiteQuality
SIO_000300: 1.468943e6

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

FS
type: SiteQuality
SIO_000300: 3.742e0

QD
type: SiteQuality
SIO_000300: 1.013e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.644e0

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 1.468777e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.696e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

QD
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.194e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501501501501501e-5
allele num: 66600
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.05e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.468573e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

MQ
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.284e0

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.468286e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
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South Asian
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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FS
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ClippingRankSum
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.922e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.014e0

VQSLOD
type: SiteQuality
SIO_000300: -1.924e0

QD
type: SiteQuality
SIO_000300: 6.54e0

DP
type: SiteQuality
SIO_000300: 1.467159e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 424
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

DP
type: SiteQuality
SIO_000300: 1.466697e6

QD
type: SiteQuality
SIO_000300: 1.171e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.99e-1

FS
type: SiteQuality
SIO_000300: 3.671e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.466377e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

QD
type: SiteQuality
SIO_000300: 9.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 9.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503895088278642e-5
allele num: 66494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

FS
type: SiteQuality
SIO_000300: 2.488e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.463853e6

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

GenotypeQuality
all individuals: 912
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.713e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

QD
type: SiteQuality
SIO_000300: 1.117e1

DP
type: SiteQuality
SIO_000300: 1.459023e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320185614849188e-4
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.713e-1

DP
type: SiteQuality
SIO_000300: 1.459023e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

FS
type: SiteQuality
SIO_000300: 1.1923e1

QD
type: SiteQuality
SIO_000300: 1.117e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.051175656984786e-4
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 3.472222222222222e-3
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.830384380719951e-4
allele num: 16390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.709782314154096e-4
allele num: 66426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 1.262e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.617e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.295e1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 1.460184e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016773259321829e-5
allele num: 66296
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.34e-1

DP
type: SiteQuality
SIO_000300: 1.439482e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.927e1

QD
type: SiteQuality
SIO_000300: 1.255e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 316
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 422
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 921
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GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.364e0

DP
type: SiteQuality
SIO_000300: 1.43883e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.396e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.169999999999999e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.931247585940518e-4
allele num: 10356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 1.438151e6

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 3.663e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508750754375377e-5
allele num: 66280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.668e0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

DP
type: SiteQuality
SIO_000300: 1.437775e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 7.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 362
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GenotypeQuality
all individuals: 479
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.053e0

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.897e0

QD
type: SiteQuality
SIO_000300: 1.32e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

DP
type: SiteQuality
SIO_000300: 1.417767e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-2

DP
type: SiteQuality
SIO_000300: 1.417555e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.159e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.369e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.273525721455458e-5
allele num: 15940
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.16e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65550
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.666e0

MQ
type: SiteQuality
SIO_000300: 5.729e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.645774e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

East Asian
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allele count: 56
allele frequency: 6.490496059341678e-3
allele num: 8628
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.934235976789168e-4
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.019961948479449e-5
allele num: 66226
num of homozygotes: 0

Latino
type: Population
allele count: 544
allele frequency: 4.742807323452485e-2
allele num: 11470
num of homozygotes: 9

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

DP
type: SiteQuality
SIO_000300: 1.661037e6

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 6.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

QD
type: SiteQuality
SIO_000300: 1.451e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.116e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3531
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variant carriers: 1

GenotypeQuality
all individuals: 36657
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

FS
type: SiteQuality
SIO_000300: 1.5038e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.083e0

DP
type: SiteQuality
SIO_000300: 1.664737e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.76e0

QD
type: SiteQuality
SIO_000300: 1.064e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 541
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GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

DP
type: SiteQuality
SIO_000300: 1.672402e6

QD
type: SiteQuality
SIO_000300: 1.348e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2304
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variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509707418702255e-5
allele num: 66238
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.231072263941894e-4
allele num: 16246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.348e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

DP
type: SiteQuality
SIO_000300: 1.672402e6

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 875
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 994
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 585
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GenotypeQuality
all individuals: 7437
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variant carriers: 0

GenotypeQuality
all individuals: 786
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variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66268
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.66183574879227e-5
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.68045e6

MQ
type: SiteQuality
SIO_000300: 5.899e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.93e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.64e0

FS
type: SiteQuality
SIO_000300: 4.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.134e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 470
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 760
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2303
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GenotypeQuality
all individuals: 449
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variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.139489194499017e-5
allele num: 16288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 6.89e0

VQSLOD
type: SiteQuality
SIO_000300: -6.787e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.177e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

DP
type: SiteQuality
SIO_000300: 1.685543e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 268
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GenotypeQuality
all individuals: 1003
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.659969088098918e-5
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

DP
type: SiteQuality
SIO_000300: 1.692647e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
SIO_000300: 1.078e1

VQSLOD
type: SiteQuality
SIO_000300: -7.26e-2

FS
type: SiteQuality
SIO_000300: 1.71e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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Other
type: Population
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

DP
type: SiteQuality
SIO_000300: 1.702068e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.074596039363382e-5
allele num: 16462
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Other
type: Population
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
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European (Finnish)
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allele count: 1
allele frequency: 1.526717557251908e-4
allele num: 6550
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.002822653294096e-5
allele num: 66604
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.077549532028686e-5
allele num: 16454
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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MQ
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 2.320185614849188e-4
allele num: 8620
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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allele frequency: 0.0e0
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African
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ClippingRankSum
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MQRankSum
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QD
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.504347564461293e-5
allele num: 66474
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BaseQRankSum
type: SiteQuality
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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African
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European (Non-Finnish)
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allele frequency: 1.509707418702255e-5
allele num: 66238
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FS
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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South Asian
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African
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Other
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InbreedingCoeff
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FS
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VQSLOD
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DP
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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allele num: 65896
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European (Finnish)
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African
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South Asian
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East Asian
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 65720
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East Asian
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Latino
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African
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Other
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South Asian
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
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DP
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QD
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MQRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.138735420503377e-5
allele num: 16290
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.666e0

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 678
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.844457570387872e-5
allele num: 10158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.193317422434368e-4
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.745e0

VQSLOD
type: SiteQuality
SIO_000300: 4.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.139e1

DP
type: SiteQuality
SIO_000300: 1.598419e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.246e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.962179602079225e-5
allele num: 11158
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.942e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -3.005e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.931e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.58209e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.235635734585444e-4
allele num: 16186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.816200508536142e-4
allele num: 11012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.85319097306479e-4
allele num: 8242
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

QD
type: SiteQuality
SIO_000300: 1.312e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

DP
type: SiteQuality
SIO_000300: 1.505532e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.763492950748401e-5
allele num: 64404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.86e-1

DP
type: SiteQuality
SIO_000300: 1.500425e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.286e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

FS
type: SiteQuality
SIO_000300: 2.524e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

QD
type: SiteQuality
SIO_000300: 1.113e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.102121851346321e-5
allele num: 64472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.485109e6

QD
type: SiteQuality
SIO_000300: 9.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

FS
type: SiteQuality
SIO_000300: 4.035e0

MQRankSum
type: SiteQuality
SIO_000300: -7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.996805111821086e-4
allele num: 10016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551060925673161e-5
allele num: 64472
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 4.035e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565435190983093e-5
allele num: 63880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10828
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
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QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1244
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.011531458628363e-4
allele num: 9886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.417643e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.064e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
all individuals: 290
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1237
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 450
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.732271709380443e-4
allele num: 16076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.077795786061589e-4
allele num: 9872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.717277816214856e-5
allele num: 63596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.41771e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1368
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.015640869388584e-4
allele num: 9846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63328
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

QD
type: SiteQuality
SIO_000300: 1.666e1

VQSLOD
type: SiteQuality
SIO_000300: -2.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.399868e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.137e0

FS
type: SiteQuality
SIO_000300: 1.527e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 4124
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16038
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022494887525562e-4
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.87e-1

DP
type: SiteQuality
SIO_000300: 1.411234e6

FS
type: SiteQuality
SIO_000300: 1.095e0

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 4202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 588
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GenotypeQuality
all individuals: 393
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019367991845056e-4
allele num: 9810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.173494970010472e-5
allele num: 63022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.18e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

DP
type: SiteQuality
SIO_000300: 1.415174e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 440
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variant carriers: 0

GenotypeQuality
all individuals: 3514
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.324878776575905e-5
allele num: 10724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16064
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 1.847e0

DP
type: SiteQuality
SIO_000300: 1.424915e6

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
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variant carriers: 0

GenotypeQuality
all individuals: 1065
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1281
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variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.279881217520415e-5
allele num: 10776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

DP
type: SiteQuality
SIO_000300: 1.466862e6

FS
type: SiteQuality
SIO_000300: 1.9109e1

VQSLOD
type: SiteQuality
SIO_000300: -3.052e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.333e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.205e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.19e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571635129188408e-5
allele num: 63628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

FS
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.736e0

VQSLOD
type: SiteQuality
SIO_000300: 8.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.098e1

DP
type: SiteQuality
SIO_000300: 1.473919e6

GenotypeQuality
all individuals: 1000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 5251
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.500750375187594e-3
allele num: 7996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.316e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.48686e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1358
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GenotypeQuality
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GenotypeQuality
all individuals: 5345
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 9.75e1
variant carriers: 125

GenotypeQuality
all individuals: 2553
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

African
type: Population
allele count: 118
allele frequency: 1.188557614826753e-2
allele num: 9928
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.134992789516584e-5
allele num: 63796
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.374631268436578e-4
allele num: 10848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

QD
type: SiteQuality
SIO_000300: 1.8e1

DP
type: SiteQuality
SIO_000300: 1.493658e6

FS
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

GenotypeQuality
all individuals: 543
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5427
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 28357
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.136467710064925e-5
allele num: 63766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.500149e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 4.945e0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29809
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3570
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 976
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.129400719762165e-4
allele num: 63910
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.239310943115628e-4
allele num: 16138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10876
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.736920777279522e-4
allele num: 8028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 1.509672e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 1.297e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0