4-39347138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39347138
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39347138
    reference: chr 4
allele count: 1
allele frequency: 8.837044892188052e-6
allele num: 113160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.133-42T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.375-42T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.49-42T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.227-42T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.133-42T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.133-42T>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14970
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15072
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-39347143-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39347143
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39347143
    reference: chr 4
allele count: 1
allele frequency: 9.320880636802566e-6
allele num: 107286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.375-47A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.49-47A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.227-47A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.133-47A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.133-47A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.133-47A>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14454
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5395
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12701
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8656
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

4-39347146-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39347146
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39347147
    reference: chr 4
allele count: 4259
allele frequency: 8.402051686723219e-2
allele num: 50690
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.375-51dupA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.227-51dupA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.133-51dupA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.49-51dupA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.133-51dupA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.133-51dupA
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 2.75e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.5e0
  variant carriers: 468
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 1.75e1
  variant carriers: 1787
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.25e1
  variant carriers: 961
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 1.25e1
  variant carriers: 1709
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 412
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 1.25e1
  variant carriers: 232
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.75e1
  variant carriers: 154
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 7.5e0
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 4.75e1
  variant carriers: 471
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 6.25e1
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 5429
  bin: 2.25e1
  variant carriers: 326
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 3.75e1
  variant carriers: 501
genotype quality: GenotypeQuality
  all individuals: 23834
  bin: 2.5e0
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 1.75e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 86
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-39347146-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39347146
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39347148
    reference: chr 4
allele count: 27
allele frequency: 5.326494377589268e-4
allele num: 50690
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.375-52_375-51dupAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.133-52_133-51dupAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.49-52_49-51dupAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.227-52_227-51dupAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.133-52_133-51dupAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.133-52_133-51dupAA
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23834
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 4.75e1
  variant carriers: 4
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

4-39347146-C-CTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39347146
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39347150
    reference: chr 4
allele count: 4
allele frequency: 7.891102781613731e-5
allele num: 50690
alternate allele: CTTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.133-54_133-51dupAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.133-54_133-51dupAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.133-54_133-51dupAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.227-54_227-51dupAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.375-54_375-51dupAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.49-54_49-51dupAAAA
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23834
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

4-39347146-C-CTTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39347146
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39347151
    reference: chr 4
allele count: 10
allele frequency: 1.972775695403433e-4
allele num: 50690
alternate allele: CTTTTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.227-55_227-51dupAAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.133-55_133-51dupAAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.133-55_133-51dupAAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.49-55_49-51dupAAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.133-55_133-51dupAAAAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.375-55_375-51dupAAAAA
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23834
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

4-39347146-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39347146
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39347145
    reference: chr 4
allele count: 3933
allele frequency: 7.7589268100217e-2
allele num: 50690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.49-51delA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.133-51delA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.227-51delA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.133-51delA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.375-51delA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.133-51delA
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 2.75e1
  variant carriers: 475
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 1.25e1
  variant carriers: 1019
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 1.75e1
  variant carriers: 1464
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.5e0
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.25e1
  variant carriers: 1005
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 7.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 3.75e1
  variant carriers: 394
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 4.25e1
  variant carriers: 396
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 1.25e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 2.75e1
  variant carriers: 310
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 301
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 6.75e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 5429
  bin: 2.25e1
  variant carriers: 238
genotype quality: GenotypeQuality
  all individuals: 23834
  bin: 2.5e0
  variant carriers: 180
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 7.5e0
  variant carriers: 170
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 3.25e1
  variant carriers: 373
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 1.75e1
  variant carriers: 191
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: CT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

4-39347146-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39347146
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39347144
    reference: chr 4
allele count: 27
allele frequency: 5.326494377589268e-4
allele num: 50690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.133-52_133-51delAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.49-52_49-51delAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.227-52_227-51delAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.133-52_133-51delAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.133-52_133-51delAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.375-52_375-51delAA
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12133
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11970
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3456
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3600
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: CTT
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

4-39347148-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39347148
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39347148
    reference: chr 4
allele count: 1
allele frequency: 1.387616906724392e-5
allele num: 72066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.227-52A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.133-52A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.375-52A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.133-52A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.49-52A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.133-52A>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12191
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5450
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4308
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5477
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

4-39352918-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352918
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352918
    reference: chr 4
allele count: 689
allele frequency: 7.672605790645879e-3
allele num: 89800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.132+50C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.226+50C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+134C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.132+50C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.132+50C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.374+50C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11168
  bin: 1.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 12906
  bin: 7.5e0
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 2.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 16929
  bin: 1.25e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 6170
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 7.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 5.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 1.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 4523
  bin: 4.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 9124
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 9347
  bin: 2.25e1
  variant carriers: 20
num of homozygotes: 6
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

4-39352927-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352927
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352927
    reference: chr 4
allele count: 10
allele frequency: 1.077841729720408e-4
allele num: 92778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.374+41A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.132+41A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.226+41A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.132+41A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+125A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.132+41A>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15897
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15864
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

4-39352937-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352937
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352937
    reference: chr 4
allele count: 1
allele frequency: 1.058581923655072e-5
allele num: 94466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.226+31A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.132+31A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+115A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.132+31A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.374+31A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.132+31A>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD

4-39352941-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352941
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352941
    reference: chr 4
allele count: 1
allele frequency: 1.046243984097091e-5
allele num: 95580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.132+27T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.226+27T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+111T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.132+27T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.132+27T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.374+27T>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

4-39352949-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352949
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352949
    reference: chr 4
allele count: 2
allele frequency: 2.032024709420466e-5
allele num: 98424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+103A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.374+19A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.132+19A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.132+19A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.132+19A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.226+19A>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

4-39352949-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352949
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352949
    reference: chr 4
allele count: 1
allele frequency: 1.016012354710233e-5
allele num: 98424
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+103A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.132+19A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.132+19A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.226+19A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.132+19A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.374+19A>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

4-39352965-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352965
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352965
    reference: chr 4
allele count: 1
allele frequency: 9.658849437854963e-6
allele num: 103532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.374+3T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.132+3T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.226+3T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.132+3T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.132+3T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+87T>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 9.75e1
  variant carriers: 1
hgvs: c.132+3T>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

4-39352971-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352971
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352971
    reference: chr 4
allele count: 2
allele frequency: 1.947154234086882e-5
allele num: 102714
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.129C>T
  hgvsp: ENST00000381897.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+81C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.223C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.129C>T
  hgvsp: ENST00000349703.2:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.371C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.129C>T
  hgvsp: ENST00000512275.1:c.129C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8664
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3452
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile43Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

4-39352984-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352984
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352984
    reference: chr 4
allele count: 1
allele frequency: 1.028489149439473e-5
allele num: 97230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.116G>C
  hgvsp: ENSP00000261424.4:p.Gly39Ala
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+68G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.358G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.116G>C
  hgvsp: ENSP00000371321.1:p.Gly39Ala
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.210G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.116G>C
  hgvsp: ENSP00000422475.1:p.Gly39Ala
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly39Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

4-39352991-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39352991
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39352991
    reference: chr 4
allele count: 1
allele frequency: 1.043449225760674e-5
allele num: 95836
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.203A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.109A>G
  hgvsp: ENSP00000371321.1:p.Lys37Glu
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.351A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.109A>G
  hgvsp: ENSP00000422475.1:p.Lys37Glu
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.109A>G
  hgvsp: ENSP00000261424.4:p.Lys37Glu
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+61A>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16778
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys37Glu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

4-39353001-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353001
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353001
    reference: chr 4
allele count: 1
allele frequency: 1.082977755636899e-5
allele num: 92338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.193T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.99T>C
  hgvsp: ENST00000349703.2:c.99T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.99T>C
  hgvsp: ENST00000381897.1:c.99T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.99T>C
  hgvsp: ENST00000512275.1:c.99T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+51T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.341T>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr33Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

4-39353003-TTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353003
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353000
    reference: chr 4
allele count: 1
allele frequency: 1.093063419539602e-5
allele num: 91486
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.94_96delGAA
  hgvsp: ENSP00000371321.1:p.Glu32del
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.94_96delGAA
  hgvsp: ENSP00000422475.1:p.Glu32del
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+46_48+48delGAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.336_338delGAA
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.94_96delGAA
  hgvsp: ENSP00000261424.4:p.Glu32del
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.188_190delGAA
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19567
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22948
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu32del
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: TTTC
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

4-39353017-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353017
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353017
    reference: chr 4
allele count: 3
allele frequency: 3.476487357174311e-5
allele num: 86294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+35A>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.325A>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.83A>T
  hgvsp: ENSP00000371321.1:p.Lys28Met
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.83A>T
  hgvsp: ENSP00000422475.1:p.Lys28Met
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.83A>T
  hgvsp: ENSP00000261424.4:p.Lys28Met
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.177A>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15719
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys28Met
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

4-39353029-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353029
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353029
    reference: chr 4
allele count: 1
allele frequency: 1.220583927350845e-5
allele num: 81928
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.313A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.71A>G
  hgvsp: ENSP00000422475.1:p.Asn24Ser
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.165A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.71A>G
  hgvsp: ENSP00000261424.4:p.Asn24Ser
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.71A>G
  hgvsp: ENSP00000371321.1:p.Asn24Ser
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+23A>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3511
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn24Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

4-39353037-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353037
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353037
    reference: chr 4
allele count: 4
allele frequency: 5.059192552868562e-5
allele num: 79064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.63A>G
  hgvsp: ENST00000512275.1:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+15A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.63A>G
  hgvsp: ENST00000381897.1:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.63A>G
  hgvsp: ENST00000349703.2:c.63A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.305A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.157A>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3514
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val21Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

4-39353040-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353040
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353040
    reference: chr 4
allele count: 3
allele frequency: 3.843099075094156e-5
allele num: 78062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.60A>G
  hgvsp: ENST00000512275.1:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.154A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.60A>G
  hgvsp: ENST00000349703.2:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.302A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+12A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.60A>G
  hgvsp: ENST00000381897.1:c.60A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12045
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25561
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr20Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

4-39353041-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353041
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353041
    reference: chr 4
allele count: 2
allele frequency: 2.582044462805649e-5
allele num: 77458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.153C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.301C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+11C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.59C>T
  hgvsp: ENSP00000422475.1:p.Thr20Ile
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.59C>T
  hgvsp: ENSP00000261424.4:p.Thr20Ile
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.59C>T
  hgvsp: ENSP00000371321.1:p.Thr20Ile
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13914
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr20Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

4-39353041-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353041
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353041
    reference: chr 4
allele count: 1
allele frequency: 1.291022231402825e-5
allele num: 77458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.153C>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.59C>A
  hgvsp: ENSP00000422475.1:p.Thr20Lys
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.59C>A
  hgvsp: ENSP00000371321.1:p.Thr20Lys
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.59C>A
  hgvsp: ENSP00000261424.4:p.Thr20Lys
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.301C>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+11C>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13075
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr20Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

4-39353047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353047
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353047
    reference: chr 4
allele count: 243
allele frequency: 3.215476631556661e-3
allele num: 75572
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.53G>A
  hgvsp: ENSP00000371321.1:p.Ser18Asn
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.53G>A
  hgvsp: ENSP00000422475.1:p.Ser18Asn
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.147G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+5G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.53G>A
  hgvsp: ENSP00000261424.4:p.Ser18Asn
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.295G>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19563
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13105
  bin: 1.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 1.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 756
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 4.75e1
  variant carriers: 1
hgvs: p.Ser18Asn
num of homozygotes: 3
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

4-39353049-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353049
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353049
    reference: chr 4
allele count: 1
allele frequency: 1.338723928351495e-5
allele num: 74698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.51A>C
  hgvsp: ENST00000349703.2:c.51A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.293A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.48+3A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.145A>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.51A>C
  hgvsp: ENST00000512275.1:c.51A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.51A>C
  hgvsp: ENST00000381897.1:c.51A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11011
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
hgvs: c.48+3A>C
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

4-39353063-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353063
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353063
    reference: chr 4
allele count: 5
allele frequency: 7.075137965190322e-5
allele num: 70670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.37G>A
  hgvsp: ENSP00000422740.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.131G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.37G>A
  hgvsp: ENSP00000261424.4:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.279G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.37G>A
  hgvsp: ENSP00000422475.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.37G>A
  hgvsp: ENSP00000371321.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20239
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13421
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4762
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly13Arg
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/4-39353088-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353088
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353088
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 64438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.254G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.12G>T
  hgvsp: ENST00000503784.1:c.12G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.12G>T
  hgvsp: ENST00000381897.1:c.12G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.12G>T
  hgvsp: ENST00000512275.1:c.12G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.12G>T
  hgvsp: ENST00000349703.2:c.12G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.106G>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8436
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Arg4Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

4-39353089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353089
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353089
    reference: chr 4
allele count: 1
allele frequency: 1.563086157308991e-5
allele num: 63976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.11G>A
  hgvsp: ENSP00000422475.1:p.Arg4Gln
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.11G>A
  hgvsp: ENSP00000422740.1:p.Arg4Gln
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.105G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.253G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.11G>A
  hgvsp: ENSP00000371321.1:p.Arg4Gln
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.11G>A
  hgvsp: ENSP00000261424.4:p.Arg4Gln
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3443
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg4Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

4-39353090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353090
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353090
    reference: chr 4
allele count: 1
allele frequency: 1.575497857322914e-5
allele num: 63472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.10C>T
  hgvsp: ENSP00000422475.1:p.Arg4Trp
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.104C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.10C>T
  hgvsp: ENSP00000261424.4:p.Arg4Trp
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.252C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.10C>T
  hgvsp: ENSP00000371321.1:p.Arg4Trp
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.10C>T
  hgvsp: ENSP00000422740.1:p.Arg4Trp
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13867
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8828
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg4Trp
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

4-39353114-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353114
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353113
    reference: chr 4
allele count: 1
allele frequency: 1.783803068141277e-5
allele num: 56060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-19delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-19delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-19delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-19delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-19delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-19delT
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5564
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5078
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14437
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: GA
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

4-39353117-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353117
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353117
    reference: chr 4
allele count: 1
allele frequency: 1.818380186929483e-5
allele num: 54994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-21T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-21T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-21T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-21T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-21T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-21T>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-39353120-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353120
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353120
    reference: chr 4
allele count: 1
allele frequency: 1.875539217525038e-5
allele num: 53318
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-24G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-24G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-24G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-24G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-24G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-24G>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21632
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10701
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3511
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8830
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5439
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4428
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

4-39353121-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353121
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353121
    reference: chr 4
allele count: 3
allele frequency: 5.588465407399128e-5
allele num: 53682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-25T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-25T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-25T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-25T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-25T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-25T>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21615
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5446
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11038
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10729
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

4-39353122-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353122
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353122
    reference: chr 4
allele count: 56462
allele frequency: 9.905266481877829e-1
allele num: 57002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-26G>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11257
  bin: 1.25e1
  variant carriers: 11240
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 3.75e1
  variant carriers: 841
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 787
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 1.75e1
  variant carriers: 4269
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.75e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.25e1
  variant carriers: 918
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 6.75e1
  variant carriers: 678
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 2.5e0
  variant carriers: 7142
genotype depth: GenotypeDepth
  all individuals: 21786
  bin: 7.5e0
  variant carriers: 21719
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.25e1
  variant carriers: 819
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.75e1
  variant carriers: 902
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.25e1
  variant carriers: 1624
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 2.75e1
  variant carriers: 1005
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 5.75e1
  variant carriers: 893
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 9.75e1
  variant carriers: 2111
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.25e1
  variant carriers: 519
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.25e1
  variant carriers: 944
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 7.5e0
  variant carriers: 3220
genotype quality: GenotypeQuality
  all individuals: 9349
  bin: 1.75e1
  variant carriers: 9348
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 6.75e1
  variant carriers: 565
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 5.25e1
  variant carriers: 1424
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 436
genotype quality: GenotypeQuality
  all individuals: 3978
  bin: 1.25e1
  variant carriers: 3978
genotype quality: GenotypeQuality
  all individuals: 8667
  bin: 2.25e1
  variant carriers: 8657
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 2.75e1
  variant carriers: 3608
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 9.25e1
  variant carriers: 329
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 4.25e1
  variant carriers: 1434
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.75e1
  variant carriers: 509
num of homozygotes: 27974
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

4-39353123-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353123
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353123
    reference: chr 4
allele count: 3
allele frequency: 6.947339169098236e-5
allele num: 43182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-27C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19000
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17648
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3973
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19509
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

4-39353123-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353123
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353122
    reference: chr 4
allele count: 2
allele frequency: 4.63155944606549e-5
allele num: 43182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-28delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-28delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-28delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-28delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-28delT
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-28delT
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9363
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17648
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19509
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: GA
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

4-39353127-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353127
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353127
    reference: chr 4
allele count: 1
allele frequency: 2.42518310132415e-5
allele num: 41234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-31T>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-31T>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-31T>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-31T>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-31T>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-31T>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17454
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8486
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20541
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

4-39353130-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353130
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353130
    reference: chr 4
allele count: 1
allele frequency: 2.621231979030144e-5
allele num: 38150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-34G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-34G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-34G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-34G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-34G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-34G>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3965
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4810
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 21034
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

4-39353131-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353131
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353131
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 38270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-35T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-35T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-35T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-35T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-35T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-35T>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17562
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21007
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12867
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

4-39353137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353137
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353137
    reference: chr 4
allele count: 12
allele frequency: 3.369461447745269e-4
allele num: 35614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-41G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-41G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-41G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-41G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-41G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-41G>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18273
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21230
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5642
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3969
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21130
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

4-39353138-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353138
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353138
    reference: chr 4
allele count: 2
allele frequency: 5.722788142382969e-5
allele num: 34948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-42C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-42C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-42C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-42C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-42C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-42C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21266
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18452
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9960
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5791
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21008
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

4-39353138-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39353138
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39353138
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 34948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.98-42C>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.4-42C>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.4-42C>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.4-42C>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.246-42C>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.4-42C>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21266
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21008
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9960
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5791
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

4-39367815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367815
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367815
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 21680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+44C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+44C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+44C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+44C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+44C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+44C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22622
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4411
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

4-39367815-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367815
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367816
    reference: chr 4
allele count: 8
allele frequency: 3.690036900369004e-4
allele num: 21680
alternate allele: GC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+43dupG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+43dupG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+43dupG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+43dupG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+43dupG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+43dupG
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22622
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5272
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16004
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

4-39367815-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367815
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367814
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 21680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+43delG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+43delG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+43delG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+43delG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+43delG
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+43delG
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22622
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4411
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: GC
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/4-39367816-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367816
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367816
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 21270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+43G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+43G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+43G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+43G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+43G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+43G>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22440
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5599
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

4-39367817-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367817
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367817
    reference: chr 4
allele count: 43
allele frequency: 1.98797965788257e-3
allele num: 21630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+42G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+42G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+42G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+42G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+42G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+42G>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22506
  bin: 7.5e0
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24609
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21085
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4883
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.25e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/4-39367817-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367817
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367817
    reference: chr 4
allele count: 18
allele frequency: 8.321775312066575e-4
allele num: 21630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+42G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+42G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+42G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+42G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+42G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+42G>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24609
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22506
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4883
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16506
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

4-39367819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367819
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367819
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 21726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+40G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+40G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+40G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+40G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+40G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+40G>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24648
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22667
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4016
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21553
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/4-39367820-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367820
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367820
    reference: chr 4
allele count: 3
allele frequency: 1.380071763731714e-4
allele num: 21738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+39G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+39G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+39G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+39G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+39G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+39G>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24601
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21635
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18767
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-39367820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367820
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367820
    reference: chr 4
allele count: 3
allele frequency: 1.380071763731714e-4
allele num: 21738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+39G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+39G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+39G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+39G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+39G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+39G>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22755
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

4-39367824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367824
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367824
    reference: chr 4
allele count: 76
allele frequency: 3.532583434042949e-3
allele num: 21514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+35C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+35C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+35C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+35C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+35C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+35C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24557
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22812
  bin: 7.5e0
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 21754
  bin: 7.5e0
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 2.75e1
  variant carriers: 7
num of homozygotes: 3
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/4-39367825-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367825
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367825
    reference: chr 4
allele count: 4
allele frequency: 1.921968095329617e-4
allele num: 20812
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+34T>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+34T>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+34T>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+34T>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+34T>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+34T>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22649
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3809
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21316
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/4-39367829-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367829
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367829
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 20994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+30G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+30G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+30G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+30G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+30G>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+30G>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22926
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1827
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

4-39367830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367830
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367830
    reference: chr 4
allele count: 8
allele frequency: 3.793986531347814e-4
allele num: 21086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+29C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+29C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+29C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+29C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+29C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+29C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22996
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3836
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum

4-39367832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367832
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367832
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 21024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+27C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+27C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23004
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20092
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

4-39367833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367833
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367833
    reference: chr 4
allele count: 1
allele frequency: 4.752851711026616e-5
allele num: 21040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+26G>A
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+26G>A
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23098
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 22404
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 66
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genotype quality: GenotypeQuality
  all individuals: 20580
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum

4-39367839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367839
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367839
    reference: chr 4
allele count: 1
allele frequency: 4.879476920074168e-5
allele num: 20494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+20C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+20C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+20C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+20C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+20C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+20C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19894
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 22912
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genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 2864
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genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

4-39367845-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367845
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367845
    reference: chr 4
allele count: 1
allele frequency: 5.039814534825118e-5
allele num: 19842
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+14G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+14G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+14G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+14G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+14G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+14G>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22676
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25055
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 33
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23457
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1671
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2976
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19490
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

4-39367850-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367850
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367850
    reference: chr 4
allele count: 1
allele frequency: 5.13083632632119e-5
allele num: 19490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.124+9C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.3+9C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.3+9C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.3+9C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.97+9C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.3+9C>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23997
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

4-39367862-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367862
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367862
    reference: chr 4
allele count: 1
allele frequency: 5.478251342171579e-5
allele num: 18254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.121G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.94G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.-1G>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.-1G>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18423
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25410
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

4-39367874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367874
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367874
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 17300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.109T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.-13T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.-13T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.82T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.-13T>C
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.-13T>C
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21281
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26967
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

4-39367876-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367876
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367876
    reference: chr 4
allele count: 2
allele frequency: 1.179106237471996e-4
allele num: 16962
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.80C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.-15C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.107C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20753
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17356
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

4-39367884-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367884
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367884
    reference: chr 4
allele count: 1
allele frequency: 6.288517167651868e-5
allele num: 15902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.-23A>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.72A>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.99A>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.-23A>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27399
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

4-39367886-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367886
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367886
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 15860
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.-25C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.97C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.70C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19423
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

4-39367888-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367888
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367888
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 15824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.-27A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.-27A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.-27A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.68A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.-27A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.95A>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19356
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4079
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27592
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

4-39367895-CGGGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367895
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367891
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 14610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.57_60delACCC
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.-38_-35delACCC
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.-38_-35delACCC
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.-38_-35delACCC
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.-38_-35delACCC
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.84_87delACCC
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30148
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19103
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5053
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: CGGGT
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-39367899-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367899
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367899
    reference: chr 4
allele count: 2
allele frequency: 1.411631846414455e-4
allele num: 14168
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.-38A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.84A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.-38A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.-38A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.-38A>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.57A>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19228
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25595
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10425
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5022
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4937
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5234
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

4-39367901-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39367901
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 39367901
    reference: chr 4
allele count: 1
allele frequency: 6.970584134950509e-5
allele num: 14346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422475
  ensembl transcript: ENST00000512275
  gene symbol: RFC1
  hgvsc: ENST00000512275.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000422740
  ensembl transcript: ENST00000503784
  gene symbol: RFC1
  hgvsc: ENST00000503784.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000371321
  ensembl transcript: ENST00000381897
  gene symbol: RFC1
  hgvsc: ENST00000381897.1:c.-40C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000504849
  gene symbol: RFC1
  hgvsc: ENST00000504849.1:n.55C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000035928
  ensembl protein: ENSP00000261424
  ensembl transcript: ENST00000349703
  gene symbol: RFC1
  hgvsc: ENST00000349703.2:c.-40C>G
  variant of: http://identifiers.org/hgnc/9969
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000035928
  ensembl transcript: ENST00000418436
  gene symbol: RFC1
  hgvsc: ENST00000418436.1:n.82C>G
  variant of: http://identifiers.org/hgnc/9969
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 542
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4404
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5683
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61802
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.293680297397769e-5
allele num: 10760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16066
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.440471e6

QD
type: SiteQuality
SIO_000300: 7.84e0

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

GenotypeQuality
all individuals: 2051
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6762
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.716620317918083e-5
allele num: 58254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7340
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.715e0

DP
type: SiteQuality
SIO_000300: 1.42172e6

QD
type: SiteQuality
SIO_000300: 6.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.739e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

GenotypeQuality
all individuals: 828
bin: 5.75e1
variant carriers: 325

GenotypeQuality
all individuals: 1873
bin: 4.25e1
variant carriers: 486

GenotypeQuality
all individuals: 3600
bin: 3.25e1
variant carriers: 477

GenotypeQuality
all individuals: 510
bin: 7.25e1
variant carriers: 196

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 101

GenotypeQuality
all individuals: 755
bin: 6.75e1
variant carriers: 214

GenotypeQuality
all individuals: 3456
bin: 2.75e1
variant carriers: 375

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 291

Latino
type: Population
allele count: 370
allele frequency: 9.409969481180061e-2
allele num: 3932
num of homozygotes: 0

Other
type: Population
allele count: 47
allele frequency: 1.140776699029126e-1
allele num: 412
num of homozygotes: 0

African
type: Population
allele count: 365
allele frequency: 8.039647577092511e-2
allele num: 4540
num of homozygotes: 0

South Asian
type: Population
allele count: 1122
allele frequency: 1.534883720930233e-1
allele num: 7310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2018
allele frequency: 7.362813776999416e-2
allele num: 27408
num of homozygotes: 0

East Asian
type: Population
allele count: 243
allele frequency: 6.919134396355353e-2
allele num: 3512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 94
allele frequency: 2.628635346756152e-2
allele num: 3576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.034e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

DP
type: SiteQuality
SIO_000300: 1.280253e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 5429
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 4097
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 755
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 1

Other
type: Population
allele count: 1
allele frequency: 2.427184466019417e-3
allele num: 412
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 7.62970498474059e-4
allele num: 3932
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.231190150478796e-3
allele num: 7310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.847380410022779e-4
allele num: 3512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.796420581655481e-4
allele num: 3576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 4.378283712784588e-4
allele num: 27408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

DP
type: SiteQuality
SIO_000300: 1.280253e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.034e-1

QD
type: SiteQuality
SIO_000300: 1.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3199
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 4
allele frequency: 8.81057268722467e-4
allele num: 4540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.918e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.034e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

DP
type: SiteQuality
SIO_000300: 1.280253e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

QD
type: SiteQuality
SIO_000300: 1.85e0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

GenotypeQuality
all individuals: 1965
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.54323499491353e-4
allele num: 3932
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 1.982378854625551e-3
allele num: 4540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27408
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.280253e6

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.034e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

QD
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

GenotypeQuality
all individuals: 1965
bin: 4.75e1
variant carriers: 398

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 61

GenotypeQuality
all individuals: 1151
bin: 6.25e1
variant carriers: 218

GenotypeQuality
all individuals: 828
bin: 5.75e1
variant carriers: 266

GenotypeQuality
all individuals: 479
bin: 7.75e1
variant carriers: 115

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 45

GenotypeQuality
all individuals: 1357
bin: 9.75e1
variant carriers: 665

GenotypeQuality
all individuals: 324
bin: 8.25e1
variant carriers: 75

African
type: Population
allele count: 260
allele frequency: 5.726872246696035e-2
allele num: 4540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 58
allele frequency: 1.621923937360179e-2
allele num: 3576
num of homozygotes: 0

South Asian
type: Population
allele count: 1059
allele frequency: 1.448700410396717e-1
allele num: 7310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2044
allele frequency: 7.457676590776416e-2
allele num: 27408
num of homozygotes: 0

Latino
type: Population
allele count: 322
allele frequency: 8.189216683621567e-2
allele num: 3932
num of homozygotes: 0

Other
type: Population
allele count: 28
allele frequency: 6.796116504854369e-2
allele num: 412
num of homozygotes: 0

East Asian
type: Population
allele count: 162
allele frequency: 4.612756264236902e-2
allele num: 3512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.034e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.280253e6

MQ
type: SiteQuality
SIO_000300: 5.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

QD
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 5429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23834
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 3199
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 510
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1151
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.847380410022779e-4
allele num: 3512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.54323499491353e-4
allele num: 3932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 5.107997664915353e-4
allele num: 27408
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.202643171806167e-4
allele num: 4540
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 1.367989056087551e-3
allele num: 7310
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.034e-1

MQ
type: SiteQuality
SIO_000300: 5.918e1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 1.280253e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

QD
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4613
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.835535976505139e-4
allele num: 5448
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.73e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.141e1

DP
type: SiteQuality
SIO_000300: 1.460218e6

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.007e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
all individuals: 1946
bin: 6.75e1
variant carriers: 22

GenotypeQuality
all individuals: 879
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 6466
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1106
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 583
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 4068
bin: 9.75e1
variant carriers: 644

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 17

South Asian
type: Population
allele count: 2
allele frequency: 2.202158114952654e-4
allele num: 9082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 61
allele frequency: 1.166794185156848e-2
allele num: 5228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7146
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 2.57847533632287e-3
allele num: 8920
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.003003003003003e-3
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 576
allele frequency: 1.152e-2
allele num: 50000
num of homozygotes: 6

African
type: Population
allele count: 25
allele frequency: 2.854532998401462e-3
allele num: 8758
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.867e0

FS
type: SiteQuality
SIO_000300: 2.661e0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.796e1

QD
type: SiteQuality
SIO_000300: 1.262e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.169436e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

GenotypeQuality
all individuals: 3690
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11671
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 658
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3704
bin: 9.75e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.951219512195122e-4
allele num: 51250
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.222642e6

VQSLOD
type: SiteQuality
SIO_000300: -8.057e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.285e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQ
type: SiteQuality
SIO_000300: 5.712e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3528
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 756
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26981
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.924335142208367e-5
allele num: 51966
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.072e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 1.297264e6

MQ
type: SiteQuality
SIO_000300: 5.766e1

QD
type: SiteQuality
SIO_000300: 1.65e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.761e0

GenotypeQuality
all individuals: 2618
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3536
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.906432302588935e-5
allele num: 52454
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.327994e6

QD
type: SiteQuality
SIO_000300: 6.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

FS
type: SiteQuality
SIO_000300: 5.219e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.71e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.024e1

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11068
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.71540033438603e-5
allele num: 53830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.556e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

DP
type: SiteQuality
SIO_000300: 1.378579e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

FS
type: SiteQuality
SIO_000300: 8.131e0

MQRankSum
type: SiteQuality
SIO_000300: -1.276e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

MQ
type: SiteQuality
SIO_000300: 5.585e1

VQSLOD
type: SiteQuality
SIO_000300: -1.281e0

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34739
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11068
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.319609395618897e-4
allele num: 7578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9188
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

QD
type: SiteQuality
SIO_000300: 1.556e1

MQ
type: SiteQuality
SIO_000300: 5.585e1

FS
type: SiteQuality
SIO_000300: 8.131e0

VQSLOD
type: SiteQuality
SIO_000300: -1.281e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 1.378579e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

MQRankSum
type: SiteQuality
SIO_000300: -1.276e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.68e-1

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.060445387062566e-4
allele num: 9430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55716
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.712e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 1.883e0

VQSLOD
type: SiteQuality
SIO_000300: -2.873e0

DP
type: SiteQuality
SIO_000300: 1.444812e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e0

QD
type: SiteQuality
SIO_000300: 3.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.086e0

GenotypeQuality
all individuals: 939
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36873
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10914
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.823087581127397e-5
allele num: 54852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.637733377006223e-4
allele num: 6106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.379e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

MQ
type: SiteQuality
SIO_000300: 5.736e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.440652e6

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.543e0

QD
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.955569461827284e-5
allele num: 51136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

QD
type: SiteQuality
SIO_000300: 1.128e1

FS
type: SiteQuality
SIO_000300: 3.053e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.329e0

MQ
type: SiteQuality
SIO_000300: 5.416e1

DP
type: SiteQuality
SIO_000300: 1.378243e6

GenotypeQuality
all individuals: 817
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8952
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.110370863868532e-4
allele num: 9006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.360695e6

VQSLOD
type: SiteQuality
SIO_000300: -1.431e0

QD
type: SiteQuality
SIO_000300: 2.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

MQ
type: SiteQuality
SIO_000300: 5.572e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

GenotypeQuality
all individuals: 358
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14112
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.080645832466397e-5
allele num: 48062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.689e1

DP
type: SiteQuality
SIO_000300: 1.315314e6

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.291e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

FS
type: SiteQuality
SIO_000300: 6.306e0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.164e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 20160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.115411982353779e-5
allele num: 14054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47580
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.304529e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.631e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.262e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 1.607e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.216e1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

GenotypeQuality
all individuals: 585
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 723
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5294
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.793863854266539e-4
allele num: 6258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.604e0

FS
type: SiteQuality
SIO_000300: 4.105e0

VQSLOD
type: SiteQuality
SIO_000300: -1.264e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 1.472e1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.106e1

DP
type: SiteQuality
SIO_000300: 1.244224e6

GenotypeQuality
all individuals: 713
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24744
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.391543502176305e-5
allele num: 41814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.905e0

MQRankSum
type: SiteQuality
SIO_000300: -2.223e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.081e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

MQ
type: SiteQuality
SIO_000300: 5.32e1

DP
type: SiteQuality
SIO_000300: 1.197706e6

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 2102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4944
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.597444089456869e-4
allele num: 6260
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.667481662591687e-4
allele num: 8180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40220
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.555e1

FS
type: SiteQuality
SIO_000300: 4.227e0

DP
type: SiteQuality
SIO_000300: 1.169908e6

QD
type: SiteQuality
SIO_000300: 1.593e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 2509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.228501228501228e-4
allele num: 8140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.534919416730622e-4
allele num: 13030
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

FS
type: SiteQuality
SIO_000300: 5.78e0

VQSLOD
type: SiteQuality
SIO_000300: -1.433e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

MQ
type: SiteQuality
SIO_000300: 5.672e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.452e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

DP
type: SiteQuality
SIO_000300: 1.160847e6

GenotypeQuality
all individuals: 1265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.547640884540915e-5
allele num: 39252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.066115702479339e-4
allele num: 4840
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.134e0

FS
type: SiteQuality
SIO_000300: 1.1149e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.208e0

MQ
type: SiteQuality
SIO_000300: 5.336e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

QD
type: SiteQuality
SIO_000300: 1.081e1

DP
type: SiteQuality
SIO_000300: 1.157441e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

GenotypeQuality
all individuals: 2065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2441
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.547640884540915e-5
allele num: 39252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13000
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.336e1

FS
type: SiteQuality
SIO_000300: 1.1149e1

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.208e0

QD
type: SiteQuality
SIO_000300: 1.081e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

DP
type: SiteQuality
SIO_000300: 1.157441e6

VQSLOD
type: SiteQuality
SIO_000300: -2.134e0

GenotypeQuality
all individuals: 25929
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 775
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 13235
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2002
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 291
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 3721
bin: 9.75e1
variant carriers: 238

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 169
allele frequency: 4.428256996122e-3
allele num: 38164
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 69
allele frequency: 1.452020202020202e-2
allele num: 4752
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.750087504375219e-4
allele num: 5714
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 6.493506493506494e-3
allele num: 616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.836e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQ
type: SiteQuality
SIO_000300: 5.671e1

MQRankSum
type: SiteQuality
SIO_000300: 4.59e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

DP
type: SiteQuality
SIO_000300: 1.144004e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.181e0

GenotypeQuality
all individuals: 683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 779
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.659291564727157e-5
allele num: 37604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4686
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.422e1

MQ
type: SiteQuality
SIO_000300: 5.08e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

DP
type: SiteQuality
SIO_000300: 1.131139e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.364e0

GenotypeQuality
all individuals: 323
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26494
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3517
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2638
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.417876588021779e-4
allele num: 35264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12458
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.742e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

VQSLOD
type: SiteQuality
SIO_000300: -1.338e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 7.93e0

FS
type: SiteQuality
SIO_000300: 8.032999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.093987e6

GenotypeQuality
all individuals: 2811
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8654
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

MQ
type: SiteQuality
SIO_000300: 5.717e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.46e-2

QD
type: SiteQuality
SIO_000300: 7.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.96e-1

FS
type: SiteQuality
SIO_000300: 3.491e0

DP
type: SiteQuality
SIO_000300: 1.015679e6

GenotypeQuality
all individuals: 1619
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2822
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4096
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.131287297527707e-4
allele num: 4692
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.012069e6

VQSLOD
type: SiteQuality
SIO_000300: -5.851e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.083e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

QD
type: SiteQuality
SIO_000300: 2.027e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

GenotypeQuality
all individuals: 8272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.46669955599408e-4
allele num: 4054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11848
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.00732e6

VQSLOD
type: SiteQuality
SIO_000300: -2.676e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 4.51e0

MQ
type: SiteQuality
SIO_000300: 5.84e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.25e-1

GenotypeQuality
all individuals: 2918
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3510
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 5173
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.685956505713232e-5
allele num: 27130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.39653e5

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.471e1

FS
type: SiteQuality
SIO_000300: 1.503e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

GenotypeQuality
all individuals: 453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5405
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6827
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 530
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variant carriers: 0

GenotypeQuality
all individuals: 3315
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.76335992774349e-5
allele num: 26572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3950
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.223e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.05e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.44e-1

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

DP
type: SiteQuality
SIO_000300: 9.37257e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.85e-1

GenotypeQuality
all individuals: 949
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 641
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GenotypeQuality
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GenotypeQuality
all individuals: 1232
bin: 6.75e1
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GenotypeQuality
all individuals: 227
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.891959212267455e-5
allele num: 25694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

MQ
type: SiteQuality
SIO_000300: 5.682e1

QD
type: SiteQuality
SIO_000300: 8.17e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.099e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.37124e5

GenotypeQuality
all individuals: 629
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8710
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1244
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
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variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 228
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3312
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.158748551564311e-4
allele num: 25890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 9.37264e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.03e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 1.2481e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.338e1

VQSLOD
type: SiteQuality
SIO_000300: -1.534e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 19

GenotypeQuality
all individuals: 5632
bin: 3.25e1
variant carriers: 5631

GenotypeQuality
all individuals: 3988
bin: 3.75e1
variant carriers: 3988

GenotypeQuality
all individuals: 771
bin: 6.25e1
variant carriers: 769

GenotypeQuality
all individuals: 278
bin: 7.25e1
variant carriers: 278

GenotypeQuality
all individuals: 2227
bin: 4.75e1
variant carriers: 2227

GenotypeQuality
all individuals: 10393
bin: 9.75e1
variant carriers: 10391

GenotypeQuality
all individuals: 402
bin: 8.25e1
variant carriers: 402

East Asian
type: Population
allele count: 4078
allele frequency: 1.0e0
allele num: 4078
num of homozygotes: 2039

European (Non-Finnish)
type: Population
allele count: 27670
allele frequency: 9.997109617746947e-1
allele num: 27678
num of homozygotes: 13831

European (Finnish)
type: Population
allele count: 3574
allele frequency: 1.0e0
allele num: 3574
num of homozygotes: 1787

South Asian
type: Population
allele count: 11276
allele frequency: 9.998226635928356e-1
allele num: 11278
num of homozygotes: 5637

African
type: Population
allele count: 6272
allele frequency: 9.245283018867925e-1
allele num: 6784
num of homozygotes: 2893

Latino
type: Population
allele count: 3104
allele frequency: 9.955099422706863e-1
allele num: 3118
num of homozygotes: 1545

Other
type: Population
allele count: 488
allele frequency: 9.918699186991869e-1
allele num: 492
num of homozygotes: 242

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.15e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

MQ
type: SiteQuality
SIO_000300: 5.813e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 1.264444e6

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 2.945e1

GenotypeQuality
all individuals: 1208
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2979
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 675
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.454051958123304e-4
allele num: 20632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 1.199e0

DP
type: SiteQuality
SIO_000300: 9.00891e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.08e-2

MQ
type: SiteQuality
SIO_000300: 5.879e1

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3973
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9938
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 7.137758743754461e-4
allele num: 2802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2386
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 1.199e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.08e-2

MQ
type: SiteQuality
SIO_000300: 5.879e1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

DP
type: SiteQuality
SIO_000300: 9.00891e5

GenotypeQuality
all individuals: 3967
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3657
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19662
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.837298541826554e-4
allele num: 2606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.43e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
type: SiteQuality
SIO_000300: 8.81086e5

QD
type: SiteQuality
SIO_000300: 3.404e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.395e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

GenotypeQuality
all individuals: 739
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.511463844797178e-5
allele num: 18144
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.156e0

DP
type: SiteQuality
SIO_000300: 8.56078e5

FS
type: SiteQuality
SIO_000300: 3.31e0

VQSLOD
type: SiteQuality
SIO_000300: -4.416e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-2

MQ
type: SiteQuality
SIO_000300: 3.493e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.324e0

QD
type: SiteQuality
SIO_000300: 1.109e1

GenotypeQuality
all individuals: 326
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4805
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3964
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 741
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2304
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.783e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.084e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e0

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.77e-2

DP
type: SiteQuality
SIO_000300: 8.55379e5

GenotypeQuality
all individuals: 786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3639
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 490
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 328
bin: 8.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.560408260147163e-4
allele num: 16852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1088
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.444250871080139e-4
allele num: 9184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.878048780487805e-4
allele num: 2050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1730
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.11e-2

DP
type: SiteQuality
SIO_000300: 8.3644e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 1.686e0

QD
type: SiteQuality
SIO_000300: 1.444e1

MQ
type: SiteQuality
SIO_000300: 5.79e1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

GenotypeQuality
all individuals: 326
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3953
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.053268765133172e-5
allele num: 16520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.541984732824427e-4
allele num: 1048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1988
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.48e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.32182e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.54e-1

QD
type: SiteQuality
SIO_000300: 6.81e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: -2.402e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

GenotypeQuality
all individuals: 3785
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3953
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 6.81e0

VQSLOD
type: SiteQuality
SIO_000300: -2.402e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.48e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.32182e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.54e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.64732e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.94e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

GenotypeQuality
all individuals: 1124
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4411
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 7.169192953707497e-4
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.523809523809524e-4
allele num: 1050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.94e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

QD
type: SiteQuality
SIO_000300: 7.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

DP
type: SiteQuality
SIO_000300: 4.64732e5

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.64732e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.94e-2

GenotypeQuality
all individuals: 430
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4415
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20779
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 4.61952e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.66e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

FS
type: SiteQuality
SIO_000300: 4.815e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.034e1

VQSLOD
type: SiteQuality
SIO_000300: -1.286e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 168
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 16506
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 535
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 308
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 878
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 5

Latino
type: Population
allele count: 1
allele frequency: 9.541984732824427e-4
allele num: 1048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

African
type: Population
allele count: 42
allele frequency: 2.066929133858268e-2
allele num: 2032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1104
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.94e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.294e0

DP
type: SiteQuality
SIO_000300: 4.61404e5

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21085
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 301
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 535
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.154639175257732e-3
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 1.741089717328964e-3
allele num: 9764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1104
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 3.294e0

DP
type: SiteQuality
SIO_000300: 4.61404e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.94e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.219e1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 3860
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7398
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.512e0

QD
type: SiteQuality
SIO_000300: 1.049e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.87e-1

DP
type: SiteQuality
SIO_000300: 4.61984e5

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.21e-2

GenotypeQuality
all individuals: 379
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.056234718826406e-4
allele num: 9816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.62992e5

VQSLOD
type: SiteQuality
SIO_000300: 9.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 2.312e0

QD
type: SiteQuality
SIO_000300: 1.332e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.61e-2

MQ
type: SiteQuality
SIO_000300: 5.935e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 894
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21635
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18767
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.482213438735178e-3
allele num: 2024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.332e1

VQSLOD
type: SiteQuality
SIO_000300: 9.26e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.61e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

FS
type: SiteQuality
SIO_000300: 2.312e0

DP
type: SiteQuality
SIO_000300: 4.62992e5

GenotypeQuality
all individuals: 883
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 77
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 19098
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 3672
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3802
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 552
bin: 9.75e1
variant carriers: 77

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.893939393939394e-3
allele num: 1056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7346
num of homozygotes: 0

African
type: Population
allele count: 72
allele frequency: 3.607214428857716e-2
allele num: 1996
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.041666666666667e-2
allele num: 192
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.153e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

DP
type: SiteQuality
SIO_000300: 4.61366e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.69e-2

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3528
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2950
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4587
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 4
allele frequency: 2.157497303128371e-3
allele num: 1854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.05e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 4.092e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.64e-2

DP
type: SiteQuality
SIO_000300: 4.55357e5

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

GenotypeQuality
all individuals: 22070
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1062
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.1974e1

VQSLOD
type: SiteQuality
SIO_000300: -1.399e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.38e-2

DP
type: SiteQuality
SIO_000300: 4.57785e5

QD
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7264
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.380863039399625e-4
allele num: 1066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 7.410544145670124e-4
allele num: 9446
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.58124e5

VQSLOD
type: SiteQuality
SIO_000300: 7.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.033e0

QD
type: SiteQuality
SIO_000300: 1.165e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3789
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1062
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7238
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.334e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.32e-2

DP
type: SiteQuality
SIO_000300: 4.56834e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.380452788514633e-4
allele num: 7244
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.254e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.33e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 7.39e0

FS
type: SiteQuality
SIO_000300: 1.2558e1

DP
type: SiteQuality
SIO_000300: 4.58063e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.523809523809524e-4
allele num: 1050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7072
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 4.48294e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.46e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

QD
type: SiteQuality
SIO_000300: 1.064e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 599
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GenotypeQuality
all individuals: 379
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6842
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.127141568981064e-4
allele num: 8872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1038
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.848e0

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.38356e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.125e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.79e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2999
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GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 92
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1748
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8690
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1032
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South Asian
type: Population
allele count: 1
allele frequency: 1.488095238095238e-4
allele num: 6720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 988
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

FS
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -4.66e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
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Other
type: Population
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allele frequency: 0.0e0
allele num: 166
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.952380952380953e-4
allele num: 1680
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 7570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 874
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.127e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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DP
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 3.266906239790918e-4
allele num: 6122
num of homozygotes: 0

European (Non-Finnish)
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allele num: 7392
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Latino
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allele num: 750
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Other
type: Population
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allele num: 150
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 112
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.068e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.685772083614295e-4
allele num: 5932
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Latino
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.33e0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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DP
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MQRankSum
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QD
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SIO_000300: 1.615e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
all individuals: 27512
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.41e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.402e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.67533e5

QD
type: SiteQuality
SIO_000300: 8.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 5.604e1

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2078
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.422e0

VQSLOD
type: SiteQuality
SIO_000300: -6.97e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.808e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.203e0

DP
type: SiteQuality
SIO_000300: 3.64914e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.35e-2

QD
type: SiteQuality
SIO_000300: 1.0e1

GenotypeQuality
all individuals: 152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26532
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.463e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

MQ
type: SiteQuality
SIO_000300: 5.704e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 3.48595e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.691399040236249e-4
allele num: 5418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 3.4387e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.6162e1

QD
type: SiteQuality
SIO_000300: 2.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.794e0

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.99e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.212e-1