1-52260263-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260263
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260263
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2656C>G
  hgvsp: ENSP00000262679.8:p.Leu886Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2325C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.581C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+517G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.906C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2860C>G
  hgvsp: ENSP00000346890.7:p.Leu954Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*167C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2464C>G
  hgvsp: ENSP00000444416.1:p.Leu822Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.899C>G
  hgvsp: ENSP00000398464.1:p.Leu301Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+538G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41997
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51512
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5999
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu954Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

1-52260270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260270
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260270
    reference: chr 1
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.574C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+545G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2318C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.892C>T
  hgvsp: ENST00000440943.1:c.892C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2457C>T
  hgvsp: ENST00000539524.1:c.2457C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2649C>T
  hgvsp: ENST00000352171.7:c.2649C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+524G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.899C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2853C>T
  hgvsp: ENST00000354831.7:c.2853C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*160C>T
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe951Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-52260275-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260275
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260275
    reference: chr 1
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.894A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+550T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2452A>G
  hgvsp: ENSP00000444416.1:p.Asn818Asp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2313A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.887A>G
  hgvsp: ENSP00000398464.1:p.Asn297Asp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2848A>G
  hgvsp: ENSP00000346890.7:p.Asn950Asp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.569A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2644A>G
  hgvsp: ENSP00000262679.8:p.Asn882Asp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*155A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+529T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41995
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn950Asp
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

1-52260288-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260288
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260288
    reference: chr 1
allele count: 7
allele frequency: 5.771482281549396e-5
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2637-6T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.887-6T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+563A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.880-6T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2445-6T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*148-6T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+542A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.562-6T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2306-6T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2841-6T>C
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41996
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
hgvs: c.2841-6T>C
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-52260291-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260291
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260291
    reference: chr 1
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+545G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2445-9C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.887-9C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2637-9C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.880-9C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2841-9C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2306-9C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*148-9C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.562-9C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+566G>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41995
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-52260291-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260291
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260290
    reference: chr 1
allele count: 13
allele frequency: 1.071988125669993e-4
allele num: 121270
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2841-10delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+568delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2445-10delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+547delA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2306-10delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.887-10delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.880-10delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2637-10delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.562-10delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*148-10delT
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41995
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: GA
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

1-52260299-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260299
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260299
    reference: chr 1
allele count: 2
allele frequency: 1.649783878311941e-5
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2306-17T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.562-17T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*148-17T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.880-17T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2841-17T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.887-17T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2637-17T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+553A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2445-17T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+574A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41996
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-52260305-CACTGAGGCACCCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260305
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260292
    reference: chr 1
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41995
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51512
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: CACTGAGGCACCCA
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

1-52260325-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260325
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260325
    reference: chr 1
allele count: 4
allele frequency: 3.304965710980749e-5
allele num: 121030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*148-43T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2637-43T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.880-43T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+579A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.562-43T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.887-43T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2306-43T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2841-43T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+600A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2445-43T>C
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41996
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

1-52260330-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260330
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260330
    reference: chr 1
allele count: 1
allele frequency: 8.265009256810368e-6
allele num: 120992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.880-48T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2637-48T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2841-48T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+584A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.562-48T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*148-48T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.887-48T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2306-48T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+605A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2445-48T>A
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-52260445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260445
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260445
    reference: chr 1
allele count: 5
allele frequency: 4.14669342666158e-5
allele num: 120578
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+50G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+50G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+699C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+50G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+50G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+720C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+50G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+50G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+50G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+50G>A
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

1-52260450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260450
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260450
    reference: chr 1
allele count: 5
allele frequency: 4.14524954402255e-5
allele num: 120620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+45C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+45C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+45C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+45C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+45C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+45C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+704G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+45C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+725G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+45C>T
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum

1-52260453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260453
    reference: chr 1
allele count: 2
allele frequency: 1.657715005636231e-5
allele num: 120648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+42C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+42C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+42C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+42C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+42C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+728G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+42C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+42C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+707G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+42C>T
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43187
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

1-52260454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260454
    reference: chr 1
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+729G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+41C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+708G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+41C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+41C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+41C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+41C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+41C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+41C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+41C>T
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/1-52260461-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260461
    reference: chr 1
allele count: 1
allele frequency: 8.286514526259965e-6
allele num: 120678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+34G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+34G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+34G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+34G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+34G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+34G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+34G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+34G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+736C>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+715C>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum

1-52260464-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260464
    reference: chr 1
allele count: 25
allele frequency: 2.070393374741201e-4
allele num: 120750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+31T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+31T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+31T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+31T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+718A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+31T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+31T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+31T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+31T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+739A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

1-52260467-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260467
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260467
    reference: chr 1
allele count: 1
allele frequency: 8.279927799029592e-6
allele num: 120774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+28T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+28T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+28T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+28T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+28T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+28T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+28T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+721A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+742A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+28T>C
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

1-52260469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260469
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260469
    reference: chr 1
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+26G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+26G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+26G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+26G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+744C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+26G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+26G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+26G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+26G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+723C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

1-52260477-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260477
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260477
    reference: chr 1
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+18C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+18C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+752G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+18C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+18C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+18C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+18C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+18C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+18C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+731G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43185
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

1-52260487-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260487
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260487
    reference: chr 1
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+741A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+8T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+8T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+8T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+8T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+8T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+8T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+8T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+762A>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+8T>C
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
hgvs: c.2840+8T>C
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

1-52260487-ATACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260487
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260483
    reference: chr 1
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2636+4_2636+7delAGTA
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*147+4_*147+7delAGTA
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.561+4_561+7delAGTA
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+767_89+770delTACT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+746_90+749delTACT
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2840+4_2840+7delAGTA
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.879+4_879+7delAGTA
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2305+4_2305+7delAGTA
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.886+4_886+7delAGTA
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2444+4_2444+7delAGTA
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
hgvs: c.2840+4_2840+7delAGTA
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: ATACT
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-52260497-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260497
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260497
    reference: chr 1
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.877T>G
  hgvsp: ENST00000440943.1:c.877T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.559T>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2442T>G
  hgvsp: ENST00000539524.1:c.2442T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2838T>G
  hgvsp: ENST00000354831.7:c.2838T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.884T>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2303T>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2634T>G
  hgvsp: ENST00000352171.7:c.2634T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+751A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+772A>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*145T>G
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2838T>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

1-52260499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260499
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260499
    reference: chr 1
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2301G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*143G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+753C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2836G>A
  hgvsp: ENSP00000346890.7:p.Val946Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2632G>A
  hgvsp: ENSP00000262679.8:p.Val878Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.875G>A
  hgvsp: ENSP00000398464.1:p.Val293Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.882G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2440G>A
  hgvsp: ENSP00000444416.1:p.Val814Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+774C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.557G>A
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val946Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

1-52260503-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260503
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260503
    reference: chr 1
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2832T>C
  hgvsp: ENST00000354831.7:c.2832T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+778A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2628T>C
  hgvsp: ENST00000352171.7:c.2628T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.553T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.878T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*139T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2436T>C
  hgvsp: ENST00000539524.1:c.2436T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2297T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.871T>C
  hgvsp: ENST00000440943.1:c.871T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+757A>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr944Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

1-52260518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260518
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260518
    reference: chr 1
allele count: 165
allele frequency: 1.363501140382772e-3
allele num: 121012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2282G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2613G>A
  hgvsp: ENSP00000262679.8:p.Met871Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2817G>A
  hgvsp: ENSP00000346890.7:p.Met939Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*124G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.863G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.538G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2421G>A
  hgvsp: ENSP00000444416.1:p.Met807Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+793C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.856G>A
  hgvsp: ENSP00000398464.1:p.Met286Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+772C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 9.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met939Ile
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-52260519-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260519
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260519
    reference: chr 1
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2420T>C
  hgvsp: ENSP00000444416.1:p.Met807Thr
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+773A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.537T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*123T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+794A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2281T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2612T>C
  hgvsp: ENSP00000262679.8:p.Met871Thr
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.862T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.855T>C
  hgvsp: ENSP00000398464.1:p.Met286Thr
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2816T>C
  hgvsp: ENSP00000346890.7:p.Met939Thr
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met939Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

1-52260531-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260531
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260531
    reference: chr 1
allele count: 2
allele frequency: 1.653439153439154e-5
allele num: 120960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*116-5C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+806G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+785G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.848-5C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2605-5C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2413-5C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2274-5C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2809-5C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.530-5C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.850C>G
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5154
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: c.2809-5C>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

1-52260563-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260563
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260563
    reference: chr 1
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+838T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*116-37A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.530-37A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.818A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2413-37A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+817T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2605-37A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2274-37A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.848-37A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2809-37A>G
  variant of: http://identifiers.org/hgnc/7995
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

1-52260566-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260566
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260566
    reference: chr 1
allele count: 3
allele frequency: 2.485295335929086e-5
allele num: 120710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+841A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.530-40T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+820A>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2809-40T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*116-40T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.848-40T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.815T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2274-40T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2605-40T>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2413-40T>A
  variant of: http://identifiers.org/hgnc/7995
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-52260826-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260826
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260826
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*19C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+1101G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2605-300C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.530-300C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2274-300C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.555C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+1080G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2809-300C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2413-300C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.848-300C>G
  variant of: http://identifiers.org/hgnc/7995
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8207
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-52260834-GACA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260834
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260831
    reference: chr 1
allele count: 2
allele frequency: 1.807991321641656e-4
allele num: 11062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2413-311_2413-309delTGT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.530-311_530-309delTGT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+1113_89+1115delACA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.*8_*10delTGT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+1092_90+1094delACA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2605-311_2605-309delTGT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.544_546delTGT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2809-311_2809-309delTGT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.848-311_848-309delTGT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2274-311_2274-309delTGT
  variant of: http://identifiers.org/hgnc/7995
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: GACA
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

1-52260850-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260850
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260850
    reference: chr 1
allele count: 57
allele frequency: 5.166787527193619e-3
allele num: 11032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.531A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2809-324A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2605-324A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+1125T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2239A>G
  hgvsp: ENSP00000442262.1:p.Thr747Ala
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2274-324A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.530-324A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2413-324A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+1104T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.848-324A>G
  variant of: http://identifiers.org/hgnc/7995
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr747Ala
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-52260875-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260875
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260875
    reference: chr 1
allele count: 4
allele frequency: 3.663003663003663e-4
allele num: 10920
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.848-349A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2809-349A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.530-349A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.506A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2214A>G
  hgvsp: ENST00000544028.1:c.2214A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2605-349A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2413-349A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+1150T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2274-349A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+1129T>C
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu738Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-52260930-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52260930
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52260930
    reference: chr 1
allele count: 2
allele frequency: 1.910219675262655e-4
allele num: 10470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2209-50A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.89+1205T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000475310
  gene symbol: NRD1
  hgvsc: ENST00000475310.1:n.451A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2413-404A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2605-404A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.848-404A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.530-404A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2809-404A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.48T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2274-404A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.90+1184T>C
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-52263874-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263874
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263874
    reference: chr 1
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.529+47C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2808+47C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.338G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2412+47C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2604+47C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.847+47C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.726G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2208+47C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2273+47C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.337G>T
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-52263880-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263880
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263880
    reference: chr 1
allele count: 3
allele frequency: 2.482416218452627e-5
allele num: 120850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2273+41T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.344A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.732A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.847+41T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.529+41T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2208+41T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.343A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2604+41T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2412+41T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2808+41T>C
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-52263881-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263881
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263881
    reference: chr 1
allele count: 1
allele frequency: 8.274720728175424e-6
allele num: 120850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2208+40T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2412+40T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.733A>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.345A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2808+40T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.847+40T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2273+40T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.529+40T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2604+40T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.344A>G
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5607
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

1-52263882-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263882
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263882
    reference: chr 1
allele count: 1850
allele frequency: 1.531431598814589e-2
allele num: 120802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2412+39G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.847+39G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.734C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2208+39G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2808+39G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2604+39G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.346C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.345C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2273+39G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.529+39G>A
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 5.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 4.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 3.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 8.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 3.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 15540
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 4.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 7.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 6.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 6.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 8.25e1
  variant carriers: 2
num of homozygotes: 133
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-52263883-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263883
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263883
    reference: chr 1
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.346T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2273+38A>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2208+38A>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.735T>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.347T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.529+38A>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2604+38A>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2808+38A>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.847+38A>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2412+38A>T
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15612
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

1-52263914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263914
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263914
    reference: chr 1
allele count: 2
allele frequency: 1.649566164098842e-5
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.847+7G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2808+7G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2604+7G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.378C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.766C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2273+7G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.529+7G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2412+7G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.377C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2208+7G>A
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2808+7G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-52263931-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263931
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263931
    reference: chr 1
allele count: 4
allele frequency: 3.29663084327817e-5
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2263T>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.519T>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2198T>G
  hgvsp: ENSP00000442262.1:p.Val733Gly
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2798T>G
  hgvsp: ENSP00000346890.7:p.Val933Gly
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.837T>G
  hgvsp: ENSP00000398464.1:p.Val280Gly
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.783A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.394A>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.395A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2402T>G
  hgvsp: ENSP00000444416.1:p.Val801Gly
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2594T>G
  hgvsp: ENSP00000262679.8:p.Val865Gly
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val933Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

1-52263941-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263941
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.793G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.827C>G
  hgvsp: ENSP00000398464.1:p.Gln277Glu
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2788C>G
  hgvsp: ENSP00000346890.7:p.Gln930Glu
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2392C>G
  hgvsp: ENSP00000444416.1:p.Gln798Glu
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2188C>G
  hgvsp: ENSP00000442262.1:p.Gln730Glu
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2253C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2584C>G
  hgvsp: ENSP00000262679.8:p.Gln862Glu
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.509C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.404G>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.405G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23217
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gln930Glu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-52263947-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263947
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263947
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2578C>G
  hgvsp: ENSP00000262679.8:p.Leu860Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.799G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2782C>G
  hgvsp: ENSP00000346890.7:p.Leu928Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.410G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2386C>G
  hgvsp: ENSP00000444416.1:p.Leu796Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.411G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2182C>G
  hgvsp: ENSP00000442262.1:p.Leu728Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2247C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.821C>G
  hgvsp: ENSP00000398464.1:p.Leu275Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.503C>G
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5876
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu928Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum

1-52263966-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263966
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263966
    reference: chr 1
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2763C>G
  hgvsp: ENST00000354831.7:c.2763C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.430G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2559C>G
  hgvsp: ENST00000352171.7:c.2559C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.484C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2228C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.429G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2367C>G
  hgvsp: ENST00000539524.1:c.2367C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2163C>G
  hgvsp: ENST00000544028.1:c.2163C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.818G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.802C>G
  hgvsp: ENST00000440943.1:c.802C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser921Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD

1-52263979-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263979
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263979
    reference: chr 1
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2750A>G
  hgvsp: ENSP00000346890.7:p.Lys917Arg
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.789A>G
  hgvsp: ENSP00000398464.1:p.Lys264Arg
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.443T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2150A>G
  hgvsp: ENSP00000442262.1:p.Lys717Arg
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2354A>G
  hgvsp: ENSP00000444416.1:p.Lys785Arg
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.442T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.471A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.831T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2215A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2546A>G
  hgvsp: ENSP00000262679.8:p.Lys849Arg
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys917Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

1-52263982-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263982
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263982
    reference: chr 1
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.468T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2147T>C
  hgvsp: ENSP00000442262.1:p.Val716Ala
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2351T>C
  hgvsp: ENSP00000444416.1:p.Val784Ala
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2543T>C
  hgvsp: ENSP00000262679.8:p.Val848Ala
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.786T>C
  hgvsp: ENSP00000398464.1:p.Val263Ala
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2747T>C
  hgvsp: ENSP00000346890.7:p.Val916Ala
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.834A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2212T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.446A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.445A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val916Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

1-52263983-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263983
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263983
    reference: chr 1
allele count: 8
allele frequency: 6.59098024353672e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2211G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2350G>A
  hgvsp: ENSP00000444416.1:p.Val784Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2746G>A
  hgvsp: ENSP00000346890.7:p.Val916Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2146G>A
  hgvsp: ENSP00000442262.1:p.Val716Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.835C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.467G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2542G>A
  hgvsp: ENSP00000262679.8:p.Val848Ile
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.447C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.446C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.785G>A
  hgvsp: ENSP00000398464.1:p.Val263Ile
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16445
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val916Ile
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-52263984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263984
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263984
    reference: chr 1
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.466C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.836G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2145C>T
  hgvsp: ENST00000544028.1:c.2145C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2745C>T
  hgvsp: ENST00000354831.7:c.2745C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.447G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.784C>T
  hgvsp: ENST00000440943.1:c.784C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2210C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2541C>T
  hgvsp: ENST00000352171.7:c.2541C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.448G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2349C>T
  hgvsp: ENST00000539524.1:c.2349C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe915Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-52263993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263993
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263993
    reference: chr 1
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.457G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2201G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2736G>A
  hgvsp: ENST00000354831.7:c.2736G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2532G>A
  hgvsp: ENST00000352171.7:c.2532G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.775G>A
  hgvsp: ENST00000440943.1:c.775G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2340G>A
  hgvsp: ENST00000539524.1:c.2340G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.845C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.457C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2136G>A
  hgvsp: ENST00000544028.1:c.2136G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.456C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu912Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

1-52263997-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263997
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263997
    reference: chr 1
allele count: 3
allele frequency: 2.471984179301253e-5
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2336C>G
  hgvsp: ENSP00000444416.1:p.Ser779Cys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2197C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2732C>G
  hgvsp: ENSP00000346890.7:p.Ser911Cys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.461G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.771C>G
  hgvsp: ENSP00000398464.1:p.Ser258Cys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.849G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2528C>G
  hgvsp: ENSP00000262679.8:p.Ser843Cys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.453C>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2132C>G
  hgvsp: ENSP00000442262.1:p.Ser711Cys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.460G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser911Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

1-52263999-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263999
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263999
    reference: chr 1
allele count: 5
allele frequency: 4.120041530018623e-5
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.463C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2334G>A
  hgvsp: ENST00000539524.1:c.2334G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.769G>A
  hgvsp: ENST00000440943.1:c.769G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2526G>A
  hgvsp: ENST00000352171.7:c.2526G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2730G>A
  hgvsp: ENST00000354831.7:c.2730G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2130G>A
  hgvsp: ENST00000544028.1:c.2130G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.451G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.462C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2195G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.851C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16422
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu910Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

1-52263999-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52263999
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52263999
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.463C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.462C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.451G>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.769G>C
  hgvsp: ENSP00000398464.1:p.Glu257Asp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2526G>C
  hgvsp: ENSP00000262679.8:p.Glu842Asp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.851C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2334G>C
  hgvsp: ENSP00000444416.1:p.Glu778Asp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2730G>C
  hgvsp: ENSP00000346890.7:p.Glu910Asp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2130G>C
  hgvsp: ENSP00000442262.1:p.Glu710Asp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2195G>C
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu910Asp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

1-52264001-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264001
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264001
    reference: chr 1
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.449G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2728G>A
  hgvsp: ENSP00000346890.7:p.Glu910Lys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.767G>A
  hgvsp: ENSP00000398464.1:p.Glu257Lys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2193G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2128G>A
  hgvsp: ENSP00000442262.1:p.Glu710Lys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.464C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.853C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2332G>A
  hgvsp: ENSP00000444416.1:p.Glu778Lys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2524G>A
  hgvsp: ENSP00000262679.8:p.Glu842Lys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.465C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu910Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

1-52264005-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264005
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264005
    reference: chr 1
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2189C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.857G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2124C>T
  hgvsp: ENST00000544028.1:c.2124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.469G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2328C>T
  hgvsp: ENST00000539524.1:c.2328C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.468G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.763C>T
  hgvsp: ENST00000440943.1:c.763C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2724C>T
  hgvsp: ENST00000354831.7:c.2724C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.445C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2520C>T
  hgvsp: ENST00000352171.7:c.2520C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser908Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff

1-52264011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264011
    reference: chr 1
allele count: 3
allele frequency: 2.472758444470088e-5
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2322C>T
  hgvsp: ENST00000539524.1:c.2322C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.475G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2118C>T
  hgvsp: ENST00000544028.1:c.2118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.863G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2514C>T
  hgvsp: ENST00000352171.7:c.2514C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2718C>T
  hgvsp: ENST00000354831.7:c.2718C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.439C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.474G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.757C>T
  hgvsp: ENST00000440943.1:c.757C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2183C>T
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly906Gly
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

1-52264013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264013
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264013
    reference: chr 1
allele count: 30
allele frequency: 2.472799208704253e-4
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2512G>A
  hgvsp: ENSP00000262679.8:p.Gly838Ser
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.477C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.476C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.865C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2320G>A
  hgvsp: ENSP00000444416.1:p.Gly774Ser
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2116G>A
  hgvsp: ENSP00000442262.1:p.Gly706Ser
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2181G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2716G>A
  hgvsp: ENSP00000346890.7:p.Gly906Ser
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.755G>A
  hgvsp: ENSP00000398464.1:p.Gly253Ser
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.437G>A
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5848
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly906Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

1-52264043-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264043
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264043
    reference: chr 1
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.895T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2086A>G
  hgvsp: ENSP00000442262.1:p.Met696Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2151A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.725A>G
  hgvsp: ENSP00000398464.1:p.Met243Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.506T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2686A>G
  hgvsp: ENSP00000346890.7:p.Met896Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2482A>G
  hgvsp: ENSP00000262679.8:p.Met828Val
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.507T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.407A>G
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2290A>G
  hgvsp: ENSP00000444416.1:p.Met764Val
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met896Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

1-52264045-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264045
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264045
    reference: chr 1
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.508G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.897G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2288C>A
  hgvsp: ENSP00000444416.1:p.Ser763Tyr
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2480C>A
  hgvsp: ENSP00000262679.8:p.Ser827Tyr
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2149C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.723C>A
  hgvsp: ENSP00000398464.1:p.Ser242Tyr
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2684C>A
  hgvsp: ENSP00000346890.7:p.Ser895Tyr
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.509G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2084C>A
  hgvsp: ENSP00000442262.1:p.Ser695Tyr
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.405C>A
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser895Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

1-52264051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264051
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264051
    reference: chr 1
allele count: 6
allele frequency: 4.950249987624375e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.399G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.903C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2078G>A
  hgvsp: ENSP00000442262.1:p.Arg693His
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2282G>A
  hgvsp: ENSP00000444416.1:p.Arg761His
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.717G>A
  hgvsp: ENSP00000398464.1:p.Arg240His
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2143G>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2678G>A
  hgvsp: ENSP00000346890.7:p.Arg893His
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.514C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.515C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2474G>A
  hgvsp: ENSP00000262679.8:p.Arg825His
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg893His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP

1-52264052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264052
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264052
    reference: chr 1
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2281C>T
  hgvsp: ENSP00000444416.1:p.Arg761Cys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2142C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2473C>T
  hgvsp: ENSP00000262679.8:p.Arg825Cys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.398C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.904G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.515G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.516G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.716C>T
  hgvsp: ENSP00000398464.1:p.Arg240Cys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2077C>T
  hgvsp: ENSP00000442262.1:p.Arg693Cys
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2677C>T
  hgvsp: ENSP00000346890.7:p.Arg893Cys
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5791
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg893Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-52264064-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264064
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264064
    reference: chr 1
allele count: 34463
allele frequency: 2.848511398012993e-1
allele num: 120986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2269T>C
  hgvsp: ENST00000539524.1:c.2269T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2461T>C
  hgvsp: ENST00000352171.7:c.2461T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2665T>C
  hgvsp: ENST00000354831.7:c.2665T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2065T>C
  hgvsp: ENST00000544028.1:c.2065T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2130T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.916A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.386T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.704T>C
  hgvsp: ENST00000440943.1:c.704T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.528A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.527A>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 9.75e1
  variant carriers: 2501
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 7.25e1
  variant carriers: 2214
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 5.75e1
  variant carriers: 3001
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.75e1
  variant carriers: 1495
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 8.75e1
  variant carriers: 879
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 7.75e1
  variant carriers: 1741
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 2.25e1
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 4.75e1
  variant carriers: 2503
genotype depth: GenotypeDepth
  all individuals: 15196
  bin: 2.75e1
  variant carriers: 576
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 5.25e1
  variant carriers: 2772
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.25e1
  variant carriers: 1044
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 8.25e1
  variant carriers: 1246
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 2664
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.25e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 6.25e1
  variant carriers: 2911
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.25e1
  variant carriers: 2005
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 20008
  bin: 6.25e1
  variant carriers: 37
hgvs: p.Leu889Leu
num of homozygotes: 5801
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

1-52264071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264071
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264071
    reference: chr 1
allele count: 2
allele frequency: 1.658567329540743e-5
allele num: 120586
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.923A>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2658T>C
  hgvsp: ENST00000354831.7:c.2658T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.535A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2454T>C
  hgvsp: ENST00000352171.7:c.2454T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2262T>C
  hgvsp: ENST00000539524.1:c.2262T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.697T>C
  hgvsp: ENST00000440943.1:c.697T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2123T>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.534A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2058T>C
  hgvsp: ENST00000544028.1:c.2058T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.379T>C
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9167
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu886Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

1-52264076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264076
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264076
    reference: chr 1
allele count: 1
allele frequency: 8.328613785521537e-6
allele num: 120068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2053C>T
  hgvsp: ENSP00000442262.1:p.Arg685Trp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.692C>T
  hgvsp: ENSP00000398464.1:p.Arg232Trp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2257C>T
  hgvsp: ENSP00000444416.1:p.Arg753Trp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2653C>T
  hgvsp: ENSP00000346890.7:p.Arg885Trp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2449C>T
  hgvsp: ENSP00000262679.8:p.Arg817Trp
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.539G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.374C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.540G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2118C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000591675
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000591675.1:n.928G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2403
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg885Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

1-52264086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264086
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264086
    reference: chr 1
allele count: 6
allele frequency: 5.016302984700276e-5
allele num: 119610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2046-3C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2646-3C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.367-3C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.685-3C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2111-3C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.550G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2442-3C>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.549G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2250-3C>T
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2646-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-52264094-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264094
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264094
    reference: chr 1
allele count: 1
allele frequency: 8.424174009738345e-6
allele num: 118706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.685-11C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.558G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.367-11C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.557G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2646-11C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2111-11C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2046-11C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2250-11C>A
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2442-11C>A
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-52264098-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264098
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264099
    reference: chr 1
allele count: 32
allele frequency: 2.749046424521494e-4
allele num: 116404
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2046-16dupT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2646-16dupT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.685-16dupT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2111-16dupT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.367-16dupT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.570dupA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2442-16dupT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2250-16dupT
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 25765
  bin: 2.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum

1-52264098-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264098
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264097
    reference: chr 1
allele count: 4
allele frequency: 3.436308030651867e-5
allele num: 116404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.367-16delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2046-16delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.685-16delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2111-16delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.570delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2250-16delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000588291
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000588291.1:n.562delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2442-16delT
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2646-16delT
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25765
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: GA
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/1-52264107-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264107
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264107
    reference: chr 1
allele count: 6
allele frequency: 5.123125789815226e-5
allele num: 117116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2442-24G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2646-24G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2046-24G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2250-24G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2111-24G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.367-24G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.685-24G>T
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.571C>A
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24369
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7238
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32400
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

1-52264111-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52264111
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 52264111
    reference: chr 1
allele count: 1
allele frequency: 8.573241199567908e-6
allele num: 116642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000262679
  ensembl transcript: ENST00000352171
  gene symbol: NRD1
  hgvsc: ENST00000352171.7:c.2442-28G>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000346890
  ensembl transcript: ENST00000354831
  gene symbol: NRD1
  hgvsc: ENST00000354831.7:c.2646-28G>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000485608
  gene symbol: NRD1
  hgvsc: ENST00000485608.1:n.2111-28G>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl transcript: ENST00000497358
  gene symbol: NRD1
  hgvsc: ENST00000497358.1:n.367-28G>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000266993
  ensembl transcript: ENST00000586761
  gene symbol: RP4-657D16.3
  hgvsc: ENST00000586761.1:n.575C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000442262
  ensembl transcript: ENST00000544028
  gene symbol: NRD1
  hgvsc: ENST00000544028.1:c.2046-28G>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000398464
  ensembl transcript: ENST00000440943
  gene symbol: NRD1
  hgvsc: ENST00000440943.1:c.685-28G>C
  variant of: http://identifiers.org/hgnc/7995
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078618
  ensembl protein: ENSP00000444416
  ensembl transcript: ENST00000539524
  gene symbol: NRD1
  hgvsc: ENST00000539524.1:c.2250-28G>C
  variant of: http://identifiers.org/hgnc/7995
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

DP
type: SiteQuality
SIO_000300: 6.594148e6

MQ
type: SiteQuality
SIO_000300: 5.992e1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.227e1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51509
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.594155e6

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.76e-1

FS
type: SiteQuality
SIO_000300: 5.019e0

QD
type: SiteQuality
SIO_000300: 1.285e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.602e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.242e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51512
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1625e1

QD
type: SiteQuality
SIO_000300: 1.228e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.211e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.05e0

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

DP
type: SiteQuality
SIO_000300: 6.593452e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

GenotypeQuality
all individuals: 51517
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5706
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.647859922178988e-4
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

FS
type: SiteQuality
SIO_000300: 7.28e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 6.591802e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51516
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.42e0

DP
type: SiteQuality
SIO_000300: 6.591299e6

MQ
type: SiteQuality
SIO_000300: 6.016e1

FS
type: SiteQuality
SIO_000300: 1.596e0

QD
type: SiteQuality
SIO_000300: 1.468e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
all individuals: 1246
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51516
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.90850468426816e-4
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.468e1

VQSLOD
type: SiteQuality
SIO_000300: 3.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

FS
type: SiteQuality
SIO_000300: 1.596e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

MQ
type: SiteQuality
SIO_000300: 6.016e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

DP
type: SiteQuality
SIO_000300: 6.591299e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51512
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

DP
type: SiteQuality
SIO_000300: 6.586991e6

FS
type: SiteQuality
SIO_000300: 4.103e0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.96e-1

QD
type: SiteQuality
SIO_000300: 1.452e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

GenotypeQuality
all individuals: 1120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4668
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.212e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: -1.035e1

VQSLOD
type: SiteQuality
SIO_000300: -1.289e0

FS
type: SiteQuality
SIO_000300: 5.443e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-1

DP
type: SiteQuality
SIO_000300: 6.582016e6

MQ
type: SiteQuality
SIO_000300: 5.073e1

QD
type: SiteQuality
SIO_000300: 3.54e0

GenotypeQuality
all individuals: 360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51510
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.455795677799607e-4
allele num: 16288
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
SIO_000300: 6.566984e6

QD
type: SiteQuality
SIO_000300: 1.572e1

VQSLOD
type: SiteQuality
SIO_000300: 7.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.51e-1

FS
type: SiteQuality
SIO_000300: 2.014e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

MQRankSum
type: SiteQuality
SIO_000300: 5.11e-1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.065e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.404e0

VQSLOD
type: SiteQuality
SIO_000300: -6.385999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.488e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-1

DP
type: SiteQuality
SIO_000300: 6.56542e6

GenotypeQuality
all individuals: 589
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
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variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.628558204119417e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16052
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-1

FS
type: SiteQuality
SIO_000300: 4.315e0

DP
type: SiteQuality
SIO_000300: 3.421261e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.735e0

QD
type: SiteQuality
SIO_000300: 1.512e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 279
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 468
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 2158
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GenotypeQuality
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GenotypeQuality
all individuals: 300
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GenotypeQuality
all individuals: 589
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4294
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.627487274409995e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.423039e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

QD
type: SiteQuality
SIO_000300: 1.246e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1774
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variant carriers: 0

GenotypeQuality
all individuals: 4820
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.006343384541382e-5
allele num: 66526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.246e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.444e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

FS
type: SiteQuality
SIO_000300: 8.244e0

DP
type: SiteQuality
SIO_000300: 3.425873e6

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.204243702692642e-5
allele num: 16118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 3.426491e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.592e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.353e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.164e0

QD
type: SiteQuality
SIO_000300: 5.92e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1772
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.197322756569162e-5
allele num: 16136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.645e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e0

DP
type: SiteQuality
SIO_000300: 3.431975e6

VQSLOD
type: SiteQuality
SIO_000300: -5.568e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 1.155e1

FS
type: SiteQuality
SIO_000300: 2.441e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.957e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 185
bin: 2.75e1
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GenotypeQuality
all individuals: 43189
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 317
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GenotypeQuality
all individuals: 1879
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 2166
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 23
allele frequency: 2.660805182785748e-3
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005349522149426e-5
allele num: 66548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 1.862e0

DP
type: SiteQuality
SIO_000300: 3.434041e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.644e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.718172983479106e-5
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.320000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

DP
type: SiteQuality
SIO_000300: 3.434983e6

FS
type: SiteQuality
SIO_000300: 1.553e0

MQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.16e-1

QD
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SIO_000300: 1.464e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.24e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.575e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.104e0

FS
type: SiteQuality
SIO_000300: 1.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.904e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.18e-1

DP
type: SiteQuality
SIO_000300: 3.436574e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.153088850603002e-5
allele num: 16252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.129e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 3.440692e6

MQRankSum
type: SiteQuality
SIO_000300: -1.342e0

VQSLOD
type: SiteQuality
SIO_000300: -8.358e-1

FS
type: SiteQuality
SIO_000300: 7.504e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.62e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.096e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128953174797744e-5
allele num: 16316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

DP
type: SiteQuality
SIO_000300: 3.443083e6

FS
type: SiteQuality
SIO_000300: 2.544e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

QD
type: SiteQuality
SIO_000300: 1.703e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

VQSLOD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
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SIO_000300: -4.53e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

East Asian
type: Population
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allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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allele count: 0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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Other
type: Population
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African
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allele frequency: 9.703085581214826e-5
allele num: 10306
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European (Finnish)
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allele count: 0
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South Asian
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ClippingRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

Other
type: Population
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000840235265874e-5
allele num: 66648
num of homozygotes: 0

Latino
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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DP
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BaseQRankSum
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FS
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ClippingRankSum
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SIO_000300: 1.13e0

MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10300
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East Asian
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allele frequency: 1.642377978255841e-2
allele num: 8646
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South Asian
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allele frequency: 1.407761047863876e-3
allele num: 16338
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Latino
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allele frequency: 0.0e0
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ReadPosRankSum
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10300
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InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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QD
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MQRankSum
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SIO_000300: -9.52e-1

FS
type: SiteQuality
SIO_000300: 2.424e0

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.227144434899988e-4
allele num: 16298
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.216e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

DP
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SIO_000300: 3.440152e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-1

FS
type: SiteQuality
SIO_000300: 8.180999999999999e0

BaseQRankSum
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MQ
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SIO_000300: 5.96e1

QD
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InbreedingCoeff
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SIO_000300: -3.0e-4

DP
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.72762645914397e-5
allele num: 10280
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

MQ
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FS
type: SiteQuality
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VQSLOD
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
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DP
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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allele count: 0
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South Asian
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allele count: 2
allele frequency: 2.677376171352075e-4
allele num: 7470
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 3.741496598639456e-3
allele num: 2940
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South Asian
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allele frequency: 6.138243928476114e-3
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
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DP
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VQSLOD
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InbreedingCoeff
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SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

FS
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SIO_000300: 5.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

QD
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SIO_000300: 1.11e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
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SIO_000300: 2.05e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 1.389854065323141e-3
allele num: 2878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.50953e5

FS
type: SiteQuality
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QD
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -5.72e-2

VQSLOD
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SIO_000300: 8.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele count: 1
allele frequency: 5.263157894736842e-3
allele num: 190
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.745318352059925e-4
allele num: 2670
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7264
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-2

MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -5.87e-2

DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.679e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.524e1

MQ
type: SiteQuality
SIO_000300: 5.898e1

BaseQRankSum
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SIO_000300: -2.286e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 2.434933e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 3
allele frequency: 2.885725278953444e-4
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

MQ
type: SiteQuality
SIO_000300: 5.803e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.439741e6

FS
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66522
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Other
type: Population
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South Asian
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allele count: 1
allele frequency: 6.177415369409439e-5
allele num: 16188
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.37e-2

FS
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MQ
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SIO_000300: 6.0e1

VQSLOD
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DP
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SIO_000300: 2.44052e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 47
allele frequency: 7.068094321462945e-4
allele num: 66496
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Other
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South Asian
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allele frequency: 3.712411830219032e-4
allele num: 16162
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European (Finnish)
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allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 71
allele frequency: 6.134439260411267e-3
allele num: 11574
num of homozygotes: 0

African
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allele count: 1716
allele frequency: 1.64968275331667e-1
allele num: 10402
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VQSLOD
type: SiteQuality
SIO_000300: 6.35e0

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.57e-1

ReadPosRankSum
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QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.969e1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
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allele num: 66532
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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Other
type: Population
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East Asian
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South Asian
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allele count: 1
allele frequency: 6.167509559639817e-5
allele num: 16214
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European (Finnish)
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allele count: 0
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allele num: 6614
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.038e0

DP
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
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MQ
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 2.6e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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Other
type: Population
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Latino
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.073120369245719e-5
allele num: 16466
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East Asian
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MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
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MQ
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FS
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VQSLOD
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QD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.45e-2

BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 5.99880023995201e-5
allele num: 66680
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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QD
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FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66700
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Other
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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FS
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
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African
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.25e-1

DP
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.014e0

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66732
num of homozygotes: 0

Other
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allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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QD
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DP
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

Latino
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South Asian
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East Asian
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African
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European (Finnish)
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num of homozygotes: 0

Other
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ClippingRankSum
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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QD
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66730
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Latino
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Other
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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Other
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

DP
type: SiteQuality
SIO_000300: 2.462648e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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SIO_000300: -6.7e-1

ClippingRankSum
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DP
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InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -1.231e0

FS
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 2.884060757546626e-4
allele num: 10402
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
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SIO_000300: -1.582e0

FS
type: SiteQuality
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QD
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele num: 8636
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South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.365e1

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 7.96e-1

DP
type: SiteQuality
SIO_000300: 2.461878e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.96e-1

MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele num: 11572
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East Asian
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Other
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European (Non-Finnish)
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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Other
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South Asian
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MQ
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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East Asian
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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BaseQRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQRankSum
type: SiteQuality
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QD
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VQSLOD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16504
num of homozygotes: 0

European (Finnish)
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East Asian
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allele count: 0
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European (Non-Finnish)
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allele num: 66708
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African
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Latino
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Other
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MQRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.284e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

DP
type: SiteQuality
SIO_000300: 2.461489e6

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 24
bin: 5.75e1
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GenotypeQuality
all individuals: 1072
bin: 8.75e1
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GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.375e0

DP
type: SiteQuality
SIO_000300: 2.45749e6

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.9e0

GenotypeQuality
all individuals: 1934
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
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GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 1596
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.64e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.57e-1

DP
type: SiteQuality
SIO_000300: 2.457161e6

QD
type: SiteQuality
SIO_000300: 1.031e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e0

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-1

FS
type: SiteQuality
SIO_000300: 6.169e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 8.75e1
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GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 1929
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GenotypeQuality
all individuals: 23181
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2591
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GenotypeQuality
all individuals: 22002
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502070952638214e-5
allele num: 66636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

QD
type: SiteQuality
SIO_000300: 1.073e1

FS
type: SiteQuality
SIO_000300: 5.56e-1

DP
type: SiteQuality
SIO_000300: 2.456007e6

GenotypeQuality
all individuals: 175
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1070
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 22020
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GenotypeQuality
all individuals: 1925
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GenotypeQuality
all individuals: 23180
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GenotypeQuality
all individuals: 1983
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 2585
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GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e0

FS
type: SiteQuality
SIO_000300: 3.703e0

VQSLOD
type: SiteQuality
SIO_000300: -9.245e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.43e-1

DP
type: SiteQuality
SIO_000300: 2.455738e6

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 15
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variant carriers: 3

GenotypeQuality
all individuals: 41
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variant carriers: 18

GenotypeQuality
all individuals: 46
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variant carriers: 6

GenotypeQuality
all individuals: 240
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GenotypeQuality
all individuals: 974
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variant carriers: 66

GenotypeQuality
all individuals: 50
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variant carriers: 11

GenotypeQuality
all individuals: 4847
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variant carriers: 45

GenotypeQuality
all individuals: 1360
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GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 1614
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variant carriers: 58

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 10
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variant carriers: 3

GenotypeQuality
all individuals: 398
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variant carriers: 46

GenotypeQuality
all individuals: 607
bin: 9.25e1
variant carriers: 96

GenotypeQuality
all individuals: 30234
bin: 9.75e1
variant carriers: 28174

European (Finnish)
type: Population
allele count: 875
allele frequency: 1.324553436270058e-1
allele num: 6606
num of homozygotes: 45

Latino
type: Population
allele count: 4970
allele frequency: 4.304521046249783e-1
allele num: 11546
num of homozygotes: 1074

African
type: Population
allele count: 6286
allele frequency: 6.06054762822985e-1
allele num: 10372
num of homozygotes: 1878

European (Non-Finnish)
type: Population
allele count: 16405
allele frequency: 2.46780793068175e-1
allele num: 66476
num of homozygotes: 2095

South Asian
type: Population
allele count: 4029
allele frequency: 2.444781553398058e-1
allele num: 16480
num of homozygotes: 540

Other
type: Population
allele count: 250
allele frequency: 2.765486725663717e-1
allele num: 904
num of homozygotes: 33

East Asian
type: Population
allele count: 1648
allele frequency: 1.915833527086724e-1
allele num: 8602
num of homozygotes: 136

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.71e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.834e1

DP
type: SiteQuality
SIO_000300: 2.788302e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2937
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variant carriers: 0

GenotypeQuality
all individuals: 2546
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variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 678
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 678
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 114
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GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 912
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GenotypeQuality
all individuals: 3723
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018867924528302e-5
allele num: 66250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 2.881e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

QD
type: SiteQuality
SIO_000300: 1.456e1

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

DP
type: SiteQuality
SIO_000300: 1.812e6

GenotypeQuality
all individuals: 37222
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variant carriers: 0

GenotypeQuality
all individuals: 2790
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 205
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GenotypeQuality
all individuals: 660
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GenotypeQuality
all individuals: 1254
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 894
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GenotypeQuality
all individuals: 107
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GenotypeQuality
all individuals: 269
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 8767
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GenotypeQuality
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GenotypeQuality
all individuals: 3702
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GenotypeQuality
all individuals: 321
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variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.84e-1

DP
type: SiteQuality
SIO_000300: 1.796194e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.521e0

FS
type: SiteQuality
SIO_000300: 3.663e0

QD
type: SiteQuality
SIO_000300: 1.136e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 2348
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variant carriers: 0

GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 119
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variant carriers: 0

GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
all individuals: 1567
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variant carriers: 0

GenotypeQuality
all individuals: 340
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variant carriers: 0

GenotypeQuality
all individuals: 36984
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 328
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GenotypeQuality
all individuals: 882
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GenotypeQuality
all individuals: 3687
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variant carriers: 6

GenotypeQuality
all individuals: 2710
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GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65662
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.221932114882506e-4
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 2.157e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.911e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 4.14e0

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

DP
type: SiteQuality
SIO_000300: 1.77947e6

GenotypeQuality
all individuals: 2645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34815
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3191
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.715356458079135e-5
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.134e-1

DP
type: SiteQuality
SIO_000300: 1.739149e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.633e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.008e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 1900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 3034
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 662
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 648
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33090
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 492
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.099173553719008e-4
allele num: 9680
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.488964346349745e-4
allele num: 8246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.166160081053698e-4
allele num: 15792
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.409171075837742e-4
allele num: 11340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.877229209686503e-4
allele num: 63924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

MQ
type: SiteQuality
SIO_000300: 5.998e1

VQSLOD
type: SiteQuality
SIO_000300: -1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-1

DP
type: SiteQuality
SIO_000300: 1.715711e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.583e0

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

GenotypeQuality
all individuals: 1174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4050
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 717
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 722
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3034
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 244
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 769
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 662
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.128715349477504e-5
allele num: 63924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.266464032421479e-4
allele num: 15792
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
SIO_000300: 5.583e0

QD
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.715711e6

MQ
type: SiteQuality
SIO_000300: 5.998e1

GenotypeQuality
all individuals: 6138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 9.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.319954021560161e-5
allele num: 64378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

DP
type: SiteQuality
SIO_000300: 1.61037e6

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3