http://identifiers.org/exac.variant/1-17934342-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934342
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934342
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 88888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-131C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.479C>A
  hgvsp: ENSP00000399401.1:p.Ala160Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.479C>A
  hgvsp: ENSP00000364564.1:p.Ala160Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.479C>A
  hgvsp: ENSP00000355060.3:p.Ala160Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.479C>A
  hgvsp: ENSP00000394621.1:p.Ala160Asp
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27119
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30525
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala160Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-17934347-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934347
    reference: chr 1
allele count: 1717
allele frequency: 2.067479048261247e-2
allele num: 83048
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.484C>A
  hgvsp: ENST00000361221.3:c.484C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.484C>A
  hgvsp: ENST00000434513.1:c.484C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.484C>A
  hgvsp: ENST00000452522.1:c.484C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.484C>A
  hgvsp: ENST00000375415.1:c.484C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-126C>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 1.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 1.75e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18469
  bin: 2.25e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 15174
  bin: 7.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 2.75e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 18941
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 19069
  bin: 6.25e1
  variant carriers: 8
hgvs: p.Arg162Arg
num of homozygotes: 26
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-17934347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934347
    reference: chr 1
allele count: 9
allele frequency: 1.083710625180619e-4
allele num: 83048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.484C>T
  hgvsp: ENSP00000364564.1:p.Arg162Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.484C>T
  hgvsp: ENSP00000399401.1:p.Arg162Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.484C>T
  hgvsp: ENSP00000355060.3:p.Arg162Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.484C>T
  hgvsp: ENSP00000394621.1:p.Arg162Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-126C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18469
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6544
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18941
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg162Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-17934348-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934348
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934348
    reference: chr 1
allele count: 13
allele frequency: 1.579394970234479e-4
allele num: 82310
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.485G>A
  hgvsp: ENSP00000355060.3:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.485G>A
  hgvsp: ENSP00000394621.1:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-125G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.485G>A
  hgvsp: ENSP00000399401.1:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.485G>A
  hgvsp: ENSP00000364564.1:p.Arg162Gln
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18208
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2326
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg162Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

1-17934351-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934351
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934351
    reference: chr 1
allele count: 1
allele frequency: 1.204035928432104e-5
allele num: 83054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.488A>G
  hgvsp: ENSP00000394621.1:p.Gln163Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.488A>G
  hgvsp: ENSP00000355060.3:p.Gln163Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.488A>G
  hgvsp: ENSP00000399401.1:p.Gln163Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.488A>G
  hgvsp: ENSP00000364564.1:p.Gln163Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-122A>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln163Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-17934354-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934354
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934354
    reference: chr 1
allele count: 68
allele frequency: 8.837366464793492e-4
allele num: 76946
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.491C>G
  hgvsp: ENSP00000355060.3:p.Ala164Gly
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.491C>G
  hgvsp: ENSP00000399401.1:p.Ala164Gly
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.491C>G
  hgvsp: ENSP00000394621.1:p.Ala164Gly
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-119C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.491C>G
  hgvsp: ENSP00000364564.1:p.Ala164Gly
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18948
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala164Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

1-17934354-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934354
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934354
    reference: chr 1
allele count: 39
allele frequency: 5.068489590102149e-4
allele num: 76946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-119C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.491C>T
  hgvsp: ENSP00000399401.1:p.Ala164Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.491C>T
  hgvsp: ENSP00000394621.1:p.Ala164Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.491C>T
  hgvsp: ENSP00000355060.3:p.Ala164Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.491C>T
  hgvsp: ENSP00000364564.1:p.Ala164Val
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16318
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18948
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala164Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

1-17934355-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934355
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934355
    reference: chr 1
allele count: 2
allele frequency: 2.463721697996994e-5
allele num: 81178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-118G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.492G>A
  hgvsp: ENST00000375415.1:c.492G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.492G>A
  hgvsp: ENST00000434513.1:c.492G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.492G>A
  hgvsp: ENST00000361221.3:c.492G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.492G>A
  hgvsp: ENST00000452522.1:c.492G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18632
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16852
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21212
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Ala164Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-17934357-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934357
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934357
    reference: chr 1
allele count: 65
allele frequency: 8.140466887085463e-4
allele num: 79848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.494A>G
  hgvsp: ENSP00000364564.1:p.Glu165Gly
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.494A>G
  hgvsp: ENSP00000399401.1:p.Glu165Gly
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-116A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.494A>G
  hgvsp: ENSP00000394621.1:p.Glu165Gly
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.494A>G
  hgvsp: ENSP00000355060.3:p.Glu165Gly
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18888
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17061
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10709
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu165Gly
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

1-17934362-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934362
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934362
    reference: chr 1
allele count: 4
allele frequency: 5.021214631819437e-5
allele num: 79662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.499C>G
  hgvsp: ENSP00000399401.1:p.Leu167Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-111C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.499C>G
  hgvsp: ENSP00000364564.1:p.Leu167Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.499C>G
  hgvsp: ENSP00000394621.1:p.Leu167Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.499C>G
  hgvsp: ENSP00000355060.3:p.Leu167Val
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18351
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11210
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17785
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4509
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22958
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu167Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

1-17934400-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934400
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934400
    reference: chr 1
allele count: 1
allele frequency: 1.593168493499873e-5
allele num: 62768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.537G>T
  hgvsp: ENSP00000399401.1:p.Glu179Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.537G>T
  hgvsp: ENSP00000364564.1:p.Glu179Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-73G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.537G>T
  hgvsp: ENSP00000394621.1:p.Glu179Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.537G>T
  hgvsp: ENSP00000355060.3:p.Glu179Asp
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15464
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2800
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3945
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu179Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

1-17934405-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934405
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934405
    reference: chr 1
allele count: 1
allele frequency: 1.648261084555794e-5
allele num: 60670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.542C>T
  hgvsp: ENSP00000364564.1:p.Ser181Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.542C>T
  hgvsp: ENSP00000399401.1:p.Ser181Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-68C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.542C>T
  hgvsp: ENSP00000355060.3:p.Ser181Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.542C>T
  hgvsp: ENSP00000394621.1:p.Ser181Leu
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2880
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4232
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33349
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Ser181Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

1-17934406-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934406
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934406
    reference: chr 1
allele count: 1
allele frequency: 1.669226146758363e-5
allele num: 59908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-67G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.543G>A
  hgvsp: ENST00000434513.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.543G>A
  hgvsp: ENST00000375415.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.543G>A
  hgvsp: ENST00000452522.1:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.543G>A
  hgvsp: ENST00000361221.3:c.543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser181Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS

1-17934408-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934408
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934408
    reference: chr 1
allele count: 1
allele frequency: 1.667389201987528e-5
allele num: 59974
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-65G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.545G>C
  hgvsp: ENSP00000355060.3:p.Gly182Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.545G>C
  hgvsp: ENSP00000364564.1:p.Gly182Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.545G>C
  hgvsp: ENSP00000399401.1:p.Gly182Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.545G>C
  hgvsp: ENSP00000394621.1:p.Gly182Ala
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly182Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

1-17934409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934409
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934409
    reference: chr 1
allele count: 1
allele frequency: 1.683841853573112e-5
allele num: 59388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.546G>A
  hgvsp: ENST00000375415.1:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.546G>A
  hgvsp: ENST00000452522.1:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.546G>A
  hgvsp: ENST00000434513.1:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-64G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.546G>A
  hgvsp: ENST00000361221.3:c.546G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4510
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly182Gly
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

1-17934423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934423
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934423
    reference: chr 1
allele count: 1
allele frequency: 1.998800719568259e-5
allele num: 50030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.560C>T
  hgvsp: ENSP00000394621.1:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.560C>T
  hgvsp: ENSP00000399401.1:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.560C>T
  hgvsp: ENSP00000364564.1:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-50C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.560C>T
  hgvsp: ENSP00000355060.3:p.Pro187Leu
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36658
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro187Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

1-17934430-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934430
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934430
    reference: chr 1
allele count: 5
allele frequency: 1.174812030075188e-4
allele num: 42560
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.567C>T
  hgvsp: ENST00000361221.3:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.567C>T
  hgvsp: ENST00000375415.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-43C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.567C>T
  hgvsp: ENST00000452522.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.567C>T
  hgvsp: ENST00000434513.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14451
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Val189Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

1-17934431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934431
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934431
    reference: chr 1
allele count: 1
allele frequency: 2.354935945742276e-5
allele num: 42464
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.568G>A
  hgvsp: ENSP00000355060.3:p.Glu190Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.568G>A
  hgvsp: ENSP00000364564.1:p.Glu190Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-42G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.568G>A
  hgvsp: ENSP00000394621.1:p.Glu190Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.568G>A
  hgvsp: ENSP00000399401.1:p.Glu190Lys
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29562
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Glu190Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

1-17934434-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934434
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934434
    reference: chr 1
allele count: 1
allele frequency: 2.4933925098489e-5
allele num: 40106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.571G>T
  hgvsp: ENSP00000364564.1:p.Val191Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.571G>T
  hgvsp: ENSP00000394621.1:p.Val191Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.571G>T
  hgvsp: ENSP00000355060.3:p.Val191Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.571G>T
  hgvsp: ENSP00000399401.1:p.Val191Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-39G>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10078
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val191Phe
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-17934436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934436
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934436
    reference: chr 1
allele count: 2
allele frequency: 5.156233886769104e-5
allele num: 38788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.573C>T
  hgvsp: ENST00000452522.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.573C>T
  hgvsp: ENST00000361221.3:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.573C>T
  hgvsp: ENST00000434513.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.573C>T
  hgvsp: ENST00000375415.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-37C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13375
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val191Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-17934437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934437
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934437
    reference: chr 1
allele count: 19
allele frequency: 4.962131104727083e-4
allele num: 38290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.574G>A
  hgvsp: ENSP00000364564.1:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-36G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.574G>A
  hgvsp: ENSP00000355060.3:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.574G>A
  hgvsp: ENSP00000399401.1:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.574G>A
  hgvsp: ENSP00000394621.1:p.Glu192Lys
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13163
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30073
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35571
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10724
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu192Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

1-17934441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934441
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934441
    reference: chr 1
allele count: 2
allele frequency: 5.875095470301392e-5
allele num: 34042
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.578C>T
  hgvsp: ENSP00000355060.3:p.Pro193Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.578C>T
  hgvsp: ENSP00000364564.1:p.Pro193Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.578C>T
  hgvsp: ENSP00000394621.1:p.Pro193Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-32C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.578C>T
  hgvsp: ENSP00000399401.1:p.Pro193Leu
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12051
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29838
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12692
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro193Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

1-17934442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934442
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934442
    reference: chr 1
allele count: 14
allele frequency: 4.171135740674532e-4
allele num: 33564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.579C>T
  hgvsp: ENST00000434513.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.579C>T
  hgvsp: ENST00000452522.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.579C>T
  hgvsp: ENST00000361221.3:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-31C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.579C>T
  hgvsp: ENST00000375415.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11928
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29982
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33499
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro193Pro
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-17934444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934444
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934444
    reference: chr 1
allele count: 1
allele frequency: 3.011503945070168e-5
allele num: 33206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.581C>T
  hgvsp: ENSP00000394621.1:p.Ala194Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-29C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.581C>T
  hgvsp: ENSP00000399401.1:p.Ala194Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.581C>T
  hgvsp: ENSP00000364564.1:p.Ala194Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.581C>T
  hgvsp: ENSP00000355060.3:p.Ala194Val
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30428
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11621
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12857
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala194Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-17934452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934452
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934452
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 29102
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.589C>T
  hgvsp: ENSP00000355060.3:p.Arg197Ter
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-21C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.589C>T
  hgvsp: ENSP00000364564.1:p.Arg197Ter
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.589C>T
  hgvsp: ENSP00000394621.1:p.Arg197Ter
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.589C>T
  hgvsp: ENSP00000399401.1:p.Arg197Ter
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: stop gained
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29646
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15480
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg197Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-17934453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934453
    reference: chr 1
allele count: 1
allele frequency: 3.540324293705304e-5
allele num: 28246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-20G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.590G>A
  hgvsp: ENSP00000394621.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.590G>A
  hgvsp: ENSP00000399401.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.590G>A
  hgvsp: ENSP00000355060.3:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.590G>A
  hgvsp: ENSP00000364564.1:p.Arg197Gln
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29466
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16034
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg197Gln
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

1-17934484-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934484
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934484
    reference: chr 1
allele count: 167
allele frequency: 1.197819538086358e-2
allele num: 13942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.609+12G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.609+12G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-1+12G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.609+12G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.609+12G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 1.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19665
  bin: 7.5e0
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30690
  bin: 2.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 30394
  bin: 7.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 9.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 6.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 9.75e1
  variant carriers: 203
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 6.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 16605
  bin: 2.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.75e1
  variant carriers: 7
num of homozygotes: 2
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

1-17934489-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934489
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934489
    reference: chr 1
allele count: 153
allele frequency: 1.227338360340125e-2
allele num: 12466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.609+17T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.609+17T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.609+17T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.609+17T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-1+17T>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 1.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 32815
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 17948
  bin: 7.5e0
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2671
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 1.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32312
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.25e1
  variant carriers: 18
num of homozygotes: 5
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

1-17934492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934492
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934492
    reference: chr 1
allele count: 1
allele frequency: 8.598452278589854e-5
allele num: 11630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.609+20C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.609+20C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.609+20C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-1+20C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.609+20C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33368
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

1-17934512-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934512
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934512
    reference: chr 1
allele count: 26
allele frequency: 3.624198494563702e-3
allele num: 7174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.609+40C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.609+40C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.609+40C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-1+40C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.609+40C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12972
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36895
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5209
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33314
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5398
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 3
num of homozygotes: 1
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

1-17934513-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934513
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934513
    reference: chr 1
allele count: 151
allele frequency: 2.156526706655241e-2
allele num: 7002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.609+41G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.609+41G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-1+41G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.609+41G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.609+41G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 12933
  bin: 7.5e0
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36824
  bin: 2.5e0
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32888
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4774
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 6.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 5712
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4906
  bin: 2.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 1.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.25e1
  variant carriers: 6
num of homozygotes: 8
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

1-17934524-C-CAGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934524
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934528
    reference: chr 1
allele count: 4
allele frequency: 6.807351940095302e-4
allele num: 5876
alternate allele: CAGGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.609+71_609+74dupGGAG
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.609+71_609+74dupGGAG
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.609+71_609+74dupGGAG
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-1+71_-1+74dupGGAG
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.609+71_609+74dupGGAG
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12979
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36580
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10279
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5259
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

1-17934524-CAGGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17934524
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17934520
    reference: chr 1
allele count: 1
allele frequency: 1.701837985023826e-4
allele num: 5876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.609+71_609+74delGGAG
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.609+71_609+74delGGAG
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.609+71_609+74delGGAG
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.-1+71_-1+74delGGAG
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.609+71_609+74delGGAG
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12979
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5259
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10279
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: CAGGG
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

1-17939502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939502
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939502
    reference: chr 1
allele count: 3
allele frequency: 2.4933925098489e-5
allele num: 120318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-51C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3087C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-51C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3087C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3087C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48558
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

1-17939503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939503
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939503
    reference: chr 1
allele count: 2
allele frequency: 1.661654010401954e-5
allele num: 120362
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-50G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3086G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3086G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3086G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-50G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

1-17939504-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939504
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939504
    reference: chr 1
allele count: 2
allele frequency: 1.660908849322349e-5
allele num: 120416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3085C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3085C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3085C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-49C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-49C>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8569
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48559
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-17939504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939504
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939504
    reference: chr 1
allele count: 1
allele frequency: 8.304544246611745e-6
allele num: 120416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3085C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-49C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3085C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-49C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3085C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8569
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

1-17939506-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939506
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939506
    reference: chr 1
allele count: 30
allele frequency: 2.49003984063745e-4
allele num: 120480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3083T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3083T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-47T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-47T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3083T>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

1-17939507-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939507
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939507
    reference: chr 1
allele count: 1
allele frequency: 8.299995020002988e-6
allele num: 120482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3082G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3082G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-46G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3082G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-46G>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3903
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8545
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48553
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-17939509-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939509
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939509
    reference: chr 1
allele count: 1
allele frequency: 8.297102651754007e-6
allele num: 120524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3080T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-44T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-44T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3080T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3080T>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 781
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genotype quality: GenotypeQuality
  all individuals: 647
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genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 368
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-17939510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939510
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939510
    reference: chr 1
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3079C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3079C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-43C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3079C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-43C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2642
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 644
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-17939518-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939518
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939518
    reference: chr 1
allele count: 1
allele frequency: 8.29324929507381e-6
allele num: 120580
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3071C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3071C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-35C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-35C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3071C>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-17939520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939520
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939520
    reference: chr 1
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-33G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3069G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3069G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3069G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-33G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

1-17939520-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939520
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939520
    reference: chr 1
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3069G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3069G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-33G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3069G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-33G>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 902
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 333
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genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4612
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-17939533-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939533
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939533
    reference: chr 1
allele count: 1
allele frequency: 8.277323444690924e-6
allele num: 120812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3056C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3056C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3056C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-20C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-20C>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8542
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

1-17939533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939533
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939533
    reference: chr 1
allele count: 1
allele frequency: 8.277323444690924e-6
allele num: 120812
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3056C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-20C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-20C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3056C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3056C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 15
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  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

1-17939538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939538
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939538
    reference: chr 1
allele count: 4
allele frequency: 3.308628904182107e-5
allele num: 120896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3051C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3051C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-15C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-15C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3051C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-17939539-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939539
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939539
    reference: chr 1
allele count: 8
allele frequency: 6.615835001075073e-5
allele num: 120922
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-14G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3050G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3050G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3050G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-14G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48558
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6083
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-17939547-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939547
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939547
    reference: chr 1
allele count: 1
allele frequency: 8.261049153242462e-6
allele num: 121050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3042C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610-6C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3042C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3042C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610-6C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8532
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
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genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
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genotype quality: GenotypeQuality
  all individuals: 113
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: c.610-6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-17939553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939553
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939553
    reference: chr 1
allele count: 4
allele frequency: 3.301583109100814e-5
allele num: 121154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3036C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.610C>T
  hgvsp: ENSP00000394621.1:p.Leu204Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3036C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.610C>T
  hgvsp: ENSP00000355060.3:p.Leu204Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3036C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8531
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4939
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 3906
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 524
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genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 153
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48556
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu204Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

1-17939565-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939565
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939565
    reference: chr 1
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3024C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3024C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3024C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.622C>G
  hgvsp: ENSP00000355060.3:p.Leu208Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.622C>G
  hgvsp: ENSP00000394621.1:p.Leu208Val
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu208Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

1-17939568-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939568
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939568
    reference: chr 1
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3021A>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3021A>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.625A>T
  hgvsp: ENSP00000394621.1:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.625A>T
  hgvsp: ENSP00000355060.3:p.Thr209Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3021A>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6919
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr209Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-17939588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939588
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939588
    reference: chr 1
allele count: 3
allele frequency: 2.471861971227527e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.645C>T
  hgvsp: ENST00000434513.1:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.645C>T
  hgvsp: ENST00000361221.3:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3001C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3001C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3001C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8526
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 7037
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr215Tyr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

1-17939589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939589
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939589
    reference: chr 1
allele count: 2
allele frequency: 1.647826516824309e-5
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-3000G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.646G>A
  hgvsp: ENSP00000394621.1:p.Ala216Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.646G>A
  hgvsp: ENSP00000355060.3:p.Ala216Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-3000G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-3000G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 525
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genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 6.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
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genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala216Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

1-17939613-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939613
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939613
    reference: chr 1
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2976G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2976G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.670G>T
  hgvsp: ENSP00000355060.3:p.Ala224Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2976G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.670G>T
  hgvsp: ENSP00000394621.1:p.Ala224Ser
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48554
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala224Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

1-17939617-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939617
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939617
    reference: chr 1
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.674T>A
  hgvsp: ENSP00000355060.3:p.Leu225Ter
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.674T>A
  hgvsp: ENSP00000394621.1:p.Leu225Ter
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2972T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2972T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2972T>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8522
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7036
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48554
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu225Ter
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-17939623-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939623
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939623
    reference: chr 1
allele count: 7
allele frequency: 5.768438401318501e-5
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2966T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.680T>C
  hgvsp: ENSP00000355060.3:p.Val227Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2966T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.680T>C
  hgvsp: ENSP00000394621.1:p.Val227Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2966T>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8522
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7017
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48552
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val227Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

1-17939626-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939626
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939626
    reference: chr 1
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.683G>A
  hgvsp: ENSP00000355060.3:p.Gly228Glu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2963G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.683G>A
  hgvsp: ENSP00000394621.1:p.Gly228Glu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2963G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2963G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 48551
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 10
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly228Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-17939626-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939626
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939626
    reference: chr 1
allele count: 12
allele frequency: 9.889240506329114e-5
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2963G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.683G>C
  hgvsp: ENSP00000394621.1:p.Gly228Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2963G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2963G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.683G>C
  hgvsp: ENSP00000355060.3:p.Gly228Ala
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly228Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS

1-17939626-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939626
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939626
    reference: chr 1
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.683G>T
  hgvsp: ENSP00000394621.1:p.Gly228Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.683G>T
  hgvsp: ENSP00000355060.3:p.Gly228Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2963G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2963G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2963G>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7003
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly228Val
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

1-17939627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939627
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939627
    reference: chr 1
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2962G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.684G>A
  hgvsp: ENST00000361221.3:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2962G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.684G>A
  hgvsp: ENST00000434513.1:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2962G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8509
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly228Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

1-17939629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939629
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939629
    reference: chr 1
allele count: 120
allele frequency: 9.890381603890218e-4
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2960G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.686G>A
  hgvsp: ENSP00000394621.1:p.Gly229Glu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2960G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2960G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.686G>A
  hgvsp: ENSP00000355060.3:p.Gly229Glu
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3566
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8512
  bin: 9.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 48559
  bin: 9.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6983
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly229Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

1-17939630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939630
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939630
    reference: chr 1
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.687G>A
  hgvsp: ENST00000434513.1:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.687G>A
  hgvsp: ENST00000361221.3:c.687G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2959G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2959G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2959G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6999
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly229Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

1-17939630-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939630
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939630
    reference: chr 1
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.687G>C
  hgvsp: ENST00000361221.3:c.687G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.687G>C
  hgvsp: ENST00000434513.1:c.687G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2959G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2959G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2959G>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 15
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genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6999
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genotype quality: GenotypeQuality
  all individuals: 829
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48547
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly229Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-17939638-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939638
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939638
    reference: chr 1
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2951T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2951T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.695T>C
  hgvsp: ENSP00000394621.1:p.Met232Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.695T>C
  hgvsp: ENSP00000355060.3:p.Met232Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2951T>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 150
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genotype quality: GenotypeQuality
  all individuals: 48547
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met232Thr
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

1-17939646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939646
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939646
    reference: chr 1
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2943C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2943C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2943C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.703C>T
  hgvsp: ENST00000434513.1:c.703C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.703C>T
  hgvsp: ENST00000361221.3:c.703C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4091
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 4251
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 3923
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genotype depth: GenotypeDepth
  all individuals: 2583
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 524
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genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu235Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

1-17939660-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939660
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939660
    reference: chr 1
allele count: 4
allele frequency: 3.317299718029524e-5
allele num: 120580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.717C>T
  hgvsp: ENST00000434513.1:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2929C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.717C>T
  hgvsp: ENST00000361221.3:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2929C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2929C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
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genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1603
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genotype depth: GenotypeDepth
  all individuals: 198
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr239Tyr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

1-17939661-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939661
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939661
    reference: chr 1
allele count: 3
allele frequency: 2.489089491064169e-5
allele num: 120526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2928G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.718G>A
  hgvsp: ENSP00000355060.3:p.Asp240Asn
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2928G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.718G>A
  hgvsp: ENSP00000394621.1:p.Asp240Asn
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2928G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8427
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48548
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp240Asn
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

1-17939663-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939663
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939663
    reference: chr 1
allele count: 2
allele frequency: 1.663644379377464e-5
allele num: 120218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2926T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2926T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.720T>C
  hgvsp: ENST00000361221.3:c.720T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.720T>C
  hgvsp: ENST00000434513.1:c.720T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2926T>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp240Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-17939663-T-TTCCCAGCAGCCCAGATTCCCTGCTGCAGAGACCCGGCCCCCAGCTGCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939663
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939711
    reference: chr 1
allele count: 1
allele frequency: 8.318221896887321e-6
allele num: 120218
alternate allele: TTCCCAGCAGCCCAGATTCCCTGCTGCAGAGACCCGGCCCCCAGCTGCC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48547
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-17939669-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939669
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939669
    reference: chr 1
allele count: 1
allele frequency: 8.329168748958854e-6
allele num: 120060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2920G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.726G>C
  hgvsp: ENSP00000394621.1:p.Lys242Asn
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.726G>C
  hgvsp: ENSP00000355060.3:p.Lys242Asn
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2920G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2920G>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys242Asn
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

1-17939675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939675
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939675
    reference: chr 1
allele count: 2
allele frequency: 1.670536743455672e-5
allele num: 119722
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.726+6G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2914G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.726+6G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2914G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2914G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48545
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
hgvs: c.726+6G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

1-17939683-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939683
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939683
    reference: chr 1
allele count: 1
allele frequency: 8.387010198604401e-6
allele num: 119232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2906G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2906G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2906G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.726+14G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.726+14G>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48544
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

1-17939684-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 17939684
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 17939684
    reference: chr 1
allele count: 1
allele frequency: 8.387150884844418e-6
allele num: 119230
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.726+15T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.610-2905T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000394621
  ensembl transcript: ENST00000434513
  gene symbol: ARHGEF10L
  hgvsc: ENST00000434513.1:c.726+15T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.610-2905T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364569
  ensembl transcript: ENST00000375420
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375420.3:c.1-2905T>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 1617
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.007e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

MQ
type: SiteQuality
SIO_000300: 5.731e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

FS
type: SiteQuality
SIO_000300: 1.528e0

QD
type: SiteQuality
SIO_000300: 8.5e-1

DP
type: SiteQuality
SIO_000300: 1.067771e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.247e0

GenotypeQuality
all individuals: 2115
bin: 5.25e1
variant carriers: 8

GenotypeQuality
all individuals: 291
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1863
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1726
bin: 9.75e1
variant carriers: 1597

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 18

Latino
type: Population
allele count: 196
allele frequency: 2.367149758454106e-2
allele num: 8280
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 40
allele frequency: 1.20918984280532e-2
allele num: 3308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1144
allele frequency: 2.380159786950732e-2
allele num: 48064
num of homozygotes: 13

South Asian
type: Population
allele count: 286
allele frequency: 2.876106194690265e-2
allele num: 9944
num of homozygotes: 7

Other
type: Population
allele count: 15
allele frequency: 2.59515570934256e-2
allele num: 578
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 5.880431231623653e-3
allele num: 6122
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

DP
type: SiteQuality
SIO_000300: 1.022045e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
all individuals: 19069
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1423
bin: 6.75e1
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GenotypeQuality
all individuals: 844
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3308
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.02815768302494e-4
allele num: 9944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.161118508655127e-5
allele num: 48064
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.633453119895459e-4
allele num: 6122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.481042654028436e-4
allele num: 6752
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.022045e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

FS
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

GenotypeQuality
all individuals: 2679
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1663
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 8
allele frequency: 8.216926869350862e-4
allele num: 9736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.397715821296607e-5
allele num: 47632
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.617599482368166e-4
allele num: 6182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.166e1

DP
type: SiteQuality
SIO_000300: 1.001051e6

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

FS
type: SiteQuality
SIO_000300: 1.731e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 1

GenotypeQuality
all individuals: 20336
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.547987616099071e-4
allele num: 6460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.967e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

QD
type: SiteQuality
SIO_000300: 1.314e1

DP
type: SiteQuality
SIO_000300: 9.91735e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.246e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 65

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1336
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variant carriers: 0

GenotypeQuality
all individuals: 1795
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 24
allele frequency: 4.273504273504274e-3
allele num: 5616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 42
allele frequency: 9.433114724642889e-4
allele num: 44524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 8.084074373484236e-4
allele num: 2474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e0

MQ
type: SiteQuality
SIO_000300: 5.546e1

MQRankSum
type: SiteQuality
SIO_000300: -5.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.007e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

FS
type: SiteQuality
SIO_000300: 1.17623e2

DP
type: SiteQuality
SIO_000300: 9.5941e5

VQSLOD
type: SiteQuality
SIO_000300: -6.636e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.75e1
variant carriers: 37

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.055074910318633e-4
allele num: 9478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

African
type: Population
allele count: 34
allele frequency: 6.054131054131054e-3
allele num: 5616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.98391878537418e-5
allele num: 44524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.546e1

DP
type: SiteQuality
SIO_000300: 9.5941e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.007e0

FS
type: SiteQuality
SIO_000300: 1.17623e2

MQRankSum
type: SiteQuality
SIO_000300: -5.95e-1

QD
type: SiteQuality
SIO_000300: 6.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e0

VQSLOD
type: SiteQuality
SIO_000300: -6.636e1

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 19163
bin: 6.25e1
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GenotypeQuality
all individuals: 886
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.559575795383656e-4
allele num: 6412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46952
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.065e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.547e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 4.96e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

DP
type: SiteQuality
SIO_000300: 9.45452e5

GenotypeQuality
all individuals: 981
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 65

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1348
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GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 23
allele frequency: 3.687079192048733e-3
allele num: 6238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 8.866782006920416e-4
allele num: 46240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.331112591605596e-4
allele num: 3002
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.742e0

MQ
type: SiteQuality
SIO_000300: 5.63e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.282e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.457e0

DP
type: SiteQuality
SIO_000300: 9.38131e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e0

VQSLOD
type: SiteQuality
SIO_000300: -2.851e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 7.164100000000001e1

QD
type: SiteQuality
SIO_000300: 6.23e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 146
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46110
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.323389537397319e-4
allele num: 9252
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

DP
type: SiteQuality
SIO_000300: 9.22684e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e-1

FS
type: SiteQuality
SIO_000300: 5.951e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1468
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GenotypeQuality
all individuals: 1816
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.765333775786737e-5
allele num: 36162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.897e0

QD
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 5.756e0

DP
type: SiteQuality
SIO_000300: 7.44722e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e0

GenotypeQuality
all individuals: 740
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 38
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.490757304710793e-4
allele num: 6708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5200
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.34714e5

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.323e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

QD
type: SiteQuality
SIO_000300: 2.571e1

VQSLOD
type: SiteQuality
SIO_000300: -2.482e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 33805
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.899727425621991e-5
allele num: 34486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2232
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
SIO_000300: 7.29744e5

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
all individuals: 757
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GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 2478
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6684
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.475247524752475e-3
allele num: 404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.701e0

DP
type: SiteQuality
SIO_000300: 7.25951e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.031e0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9516
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34140
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.511030522816561e-4
allele num: 6618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5092
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5306
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

DP
type: SiteQuality
SIO_000300: 7.20928e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

MQRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.098e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.33e-1

FS
type: SiteQuality
SIO_000300: 2.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.62e-1

GenotypeQuality
all individuals: 145
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.481651695564376e-5
allele num: 28722
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.36461e5

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.402e0

FS
type: SiteQuality
SIO_000300: 1.123e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

QD
type: SiteQuality
SIO_000300: 3.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.65e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1356
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.333177788147457e-4
allele num: 4286
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.411255411255411e-4
allele num: 3696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.173273395995096e-5
allele num: 24470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4588
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.05e-2

FS
type: SiteQuality
SIO_000300: 2.869e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

DP
type: SiteQuality
SIO_000300: 5.88e5

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.088307440719542e-5
allele num: 24460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.243e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 8.109999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 5.86937e5

VQSLOD
type: SiteQuality
SIO_000300: -5.663e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.03e-2

GenotypeQuality
all individuals: 486
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variant carriers: 0

GenotypeQuality
all individuals: 145
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 220
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GenotypeQuality
all individuals: 2018
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3636
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.862049227246708e-4
allele num: 3494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.31e0

DP
type: SiteQuality
SIO_000300: 5.70438e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
all individuals: 129
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 202
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 408
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.975854950184004e-5
allele num: 22282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.64746e5

FS
type: SiteQuality
SIO_000300: 1.459e0

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 5.912315808622885e-4
allele num: 21988
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.90625e-3
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.895193977996526e-4
allele num: 3454
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.928536224741252e-4
allele num: 4058
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1186
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.487562189054726e-4
allele num: 4020
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.004807692307692e-4
allele num: 3328
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-2

QD
type: SiteQuality
SIO_000300: 1.29e1

FS
type: SiteQuality
SIO_000300: 1.847e0

DP
type: SiteQuality
SIO_000300: 5.60176e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.007e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 228
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East Asian
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 2
allele frequency: 5.694760820045558e-4
allele num: 3512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

DP
type: SiteQuality
SIO_000300: 5.31751e5

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.814e0

FS
type: SiteQuality
SIO_000300: 9.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.084e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 156
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variant carriers: 12

GenotypeQuality
all individuals: 24
bin: 9.25e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3740
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 4.048582995951417e-3
allele num: 2964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.039933444259567e-4
allele num: 19232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3464
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

QD
type: SiteQuality
SIO_000300: 1.087e1

FS
type: SiteQuality
SIO_000300: 4.18e-1

DP
type: SiteQuality
SIO_000300: 5.31173e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 116
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19046
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 2.934272300469484e-4
allele num: 3408
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 3730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2910
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 958
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.092e1

VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ReadPosRankSum
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SIO_000300: 1.93e0

MQ
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SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.61e-2

DP
type: SiteQuality
SIO_000300: 5.27419e5

GenotypeQuality
all individuals: 103
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 990
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GenotypeQuality
all individuals: 121
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.013e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.53e-1

DP
type: SiteQuality
SIO_000300: 4.97294e5

QD
type: SiteQuality
SIO_000300: 5.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32751
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 354
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.185822095756526e-5
allele num: 16166
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 4.9152e5

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.752e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

QD
type: SiteQuality
SIO_000300: 3.98e0

GenotypeQuality
all individuals: 2013
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 1.75e1
variant carriers: 13

GenotypeQuality
all individuals: 73
bin: 8.25e1
variant carriers: 14

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 28

GenotypeQuality
all individuals: 90
bin: 7.25e1
variant carriers: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1174
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 1.654259718775848e-3
allele num: 2418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 7.142857142857143e-3
allele num: 280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 2.75049115913556e-2
allele num: 1018
num of homozygotes: 1

Latino
type: Population
allele count: 5
allele frequency: 5.091649694501019e-3
allele num: 982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 128
allele frequency: 1.604412133366758e-2
allele num: 7978
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.46e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 3.50548e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.35e-2

FS
type: SiteQuality
SIO_000300: 2.226e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
all individuals: 271
bin: 9.75e1
variant carriers: 146

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14591
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 50
bin: 8.75e1
variant carriers: 16

GenotypeQuality
all individuals: 100
bin: 7.75e1
variant carriers: 8

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.401345291479821e-4
allele num: 7136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

African
type: Population
allele count: 152
allele frequency: 6.501283147989735e-2
allele num: 2338
num of homozygotes: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1032
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.58e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.31243e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.216e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

GenotypeQuality
all individuals: 13387
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49655791679138e-4
allele num: 6682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2206
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.311e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 3.19352e5

FS
type: SiteQuality
SIO_000300: 7.214e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 5.882e1

VQSLOD
type: SiteQuality
SIO_000300: -1.451e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e0

GenotypeQuality
all individuals: 671
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 1.38728323699422e-2
allele num: 1730
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.909180166912126e-4
allele num: 4074
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 2.52961e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.489999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.387e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 2.736e0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 274
bin: 9.75e1
variant carriers: 154

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 14

GenotypeQuality
all individuals: 358
bin: 3.25e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.035246727089627e-4
allele num: 3972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

African
type: Population
allele count: 147
allele frequency: 8.647058823529412e-2
allele num: 1700
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.184713375796179e-3
allele num: 314
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.851851851851852e-2
allele num: 54
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.59e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

QD
type: SiteQuality
SIO_000300: 1.595e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 2.50518e5

GenotypeQuality
all individuals: 262
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 1

GenotypeQuality
all individuals: 358
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.972651605231867e-4
allele num: 3364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.11864406779661e-3
allele num: 1416
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 2.43603e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.45e-2

QD
type: SiteQuality
SIO_000300: 1.18e1

FS
type: SiteQuality
SIO_000300: 1.814e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.738e1

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3364
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 7.062146892655367e-4
allele num: 1416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.45e-2

QD
type: SiteQuality
SIO_000300: 1.18e1

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.814e0

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.738e1

DP
type: SiteQuality
SIO_000300: 2.43603e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-1

GenotypeQuality
all individuals: 821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2338
bin: 6.25e1
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GenotypeQuality
all individuals: 786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.30119722747322e-5
allele num: 15870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013500482160077e-5
allele num: 66368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

QD
type: SiteQuality
SIO_000300: 2.497e1

FS
type: SiteQuality
SIO_000300: 2.552e0

DP
type: SiteQuality
SIO_000300: 4.02699e6

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.462e0

GenotypeQuality
all individuals: 1081
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48558
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variant carriers: 2

GenotypeQuality
all individuals: 501
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GenotypeQuality
all individuals: 752
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013591296748335e-5
allele num: 66366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.309e0

QD
type: SiteQuality
SIO_000300: 1.251e1

FS
type: SiteQuality
SIO_000300: 3.38e0

DP
type: SiteQuality
SIO_000300: 4.028057e6

GenotypeQuality
all individuals: 2984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.256123602562492e-4
allele num: 15922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.609e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.785e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.295e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

DP
type: SiteQuality
SIO_000300: 4.028527e6

GenotypeQuality
all individuals: 436
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48559
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 4.028527e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

FS
type: SiteQuality
SIO_000300: 1.785e0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.609e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.295e0

QD
type: SiteQuality
SIO_000300: 1.287e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

GenotypeQuality
all individuals: 787
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48562
bin: 9.75e1
variant carriers: 30

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.895752895752896e-3
allele num: 10360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

DP
type: SiteQuality
SIO_000300: 4.02941e6

QD
type: SiteQuality
SIO_000300: 1.313e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.54e-1

GenotypeQuality
all individuals: 424
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
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variant carriers: 0

GenotypeQuality
all individuals: 524
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variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505933377507379e-5
allele num: 66404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.705e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.386e1

DP
type: SiteQuality
SIO_000300: 4.028086e6

MQRankSum
type: SiteQuality
SIO_000300: -1.637e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.073e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.339e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -3.099e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 1045
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.242976651267325e-5
allele num: 16018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.306e1

DP
type: SiteQuality
SIO_000300: 4.029155e6

GenotypeQuality
all individuals: 1106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.956e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.639e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

DP
type: SiteQuality
SIO_000300: 4.030081e6

QD
type: SiteQuality
SIO_000300: 2.037e1

GenotypeQuality
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16048
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.720000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.314e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 8.726000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 4.036089e6

MQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.121e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.802e0

GenotypeQuality
all individuals: 495
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 48552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504800312998465e-5
allele num: 66454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.034e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e0

DP
type: SiteQuality
SIO_000300: 4.037365e6

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

GenotypeQuality
all individuals: 345
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48552
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16076
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

DP
type: SiteQuality
SIO_000300: 4.037365e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e0

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.034e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

GenotypeQuality
all individuals: 449
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 1.9464e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 4.046762e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: -2.814e0

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

QD
type: SiteQuality
SIO_000300: 1.537e1

GenotypeQuality
all individuals: 773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48553
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.814e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e-1

FS
type: SiteQuality
SIO_000300: 1.9464e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.537e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.627e0

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 4.046762e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.22955858846674e-4
allele num: 16266
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

DP
type: SiteQuality
SIO_000300: 4.051235e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.949e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

QD
type: SiteQuality
SIO_000300: 1.125e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.299226139294927e-4
allele num: 16282
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-1

FS
type: SiteQuality
SIO_000300: 2.429e0

DP
type: SiteQuality
SIO_000300: 4.053165e6

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

QD
type: SiteQuality
SIO_000300: 1.339e1

GenotypeQuality
all individuals: 524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.746e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.192e0

QD
type: SiteQuality
SIO_000300: 1.341e1

DP
type: SiteQuality
SIO_000300: 4.057429e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504775061565259e-5
allele num: 66596
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.306e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 4.060038e6

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.856e0

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

DP
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SIO_000300: 4.062292e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.524e0

FS
type: SiteQuality
SIO_000300: 3.317e0

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

QD
type: SiteQuality
SIO_000300: 1.47e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 785
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.987e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 1.281e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 4.06264e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 1316
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497616263380409e-5
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.063829e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.71e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

FS
type: SiteQuality
SIO_000300: 1.108e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

QD
type: SiteQuality
SIO_000300: 1.285e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.083e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.41e0

VQSLOD
type: SiteQuality
SIO_000300: -2.248e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.063666e6

FS
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.482e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49748141041017e-5
allele num: 66704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 526
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 10406
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South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.049632628579997e-4
allele num: 66690
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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QD
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
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Other
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East Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
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FS
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DP
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48551
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
type: Population
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499565126113427e-4
allele num: 66686
num of homozygotes: 0

South Asian
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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DP
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VQSLOD
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ClippingRankSum
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
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South Asian
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allele num: 16500
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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MQRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Other
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allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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VQSLOD
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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Latino
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allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 113
allele frequency: 1.69476273321735e-3
allele num: 66676
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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QD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66682
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Other
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South Asian
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VQSLOD
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BaseQRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11578
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66682
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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Other
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

MQRankSum
type: SiteQuality
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DP
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VQSLOD
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ReadPosRankSum
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FS
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QD
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MQ
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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South Asian
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European (Non-Finnish)
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allele num: 66650
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European (Finnish)
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allele num: 6614
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Other
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allele num: 908
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FS
type: SiteQuality
SIO_000300: 9.13e-1

BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele num: 6614
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Other
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South Asian
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MQ
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Latino
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allele num: 11576
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European (Finnish)
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Other
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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FS
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MQ
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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Other
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East Asian
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 66496
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Other
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

FS
type: SiteQuality
SIO_000300: 5.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

QD
type: SiteQuality
SIO_000300: 4.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 4.029892e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.487e0

GenotypeQuality
all individuals: 297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48547
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.023953e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.838e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.467e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
all individuals: 403
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017592564651921e-5
allele num: 66278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.014632e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.573e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

QD
type: SiteQuality
SIO_000300: 1.285e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.061e0

VQSLOD
type: SiteQuality
SIO_000300: -5.659999999999999e-1

GenotypeQuality
all individuals: 466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511213201958532e-5
allele num: 66172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.004e0

MQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.992e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.097e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 4.001949e6

VQSLOD
type: SiteQuality
SIO_000300: -4.59e-1

QD
type: SiteQuality
SIO_000300: 7.72e0