4-88016016-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016016
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016016
    reference: chr 4
allele count: 1
allele frequency: 8.324315325064513e-6
allele num: 120130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-51A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-51A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-51A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-51A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-51A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-51A>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7730
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-88016018-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016018
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016018
    reference: chr 4
allele count: 1
allele frequency: 8.330278897737497e-6
allele num: 120044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-49C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-49C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-49C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-49C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-49C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-49C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19157
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 123
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2182
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

4-88016020-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016020
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016020
    reference: chr 4
allele count: 2
allele frequency: 1.664863065012903e-5
allele num: 120130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-47T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-47T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-47T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-47T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-47T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-47T>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27635
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

4-88016020-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016020
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016020
    reference: chr 4
allele count: 1
allele frequency: 8.324315325064513e-6
allele num: 120130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-47T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-47T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-47T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-47T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-47T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-47T>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-88016021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016021
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016021
    reference: chr 4
allele count: 3
allele frequency: 2.497876804715991e-5
allele num: 120102
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-46G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-46G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-46G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-46G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-46G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-46G>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19279
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7707
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

4-88016031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016031
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016031
    reference: chr 4
allele count: 39
allele frequency: 3.243782749729685e-4
allele num: 120230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-36G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-36G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-36G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-36G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-36G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-36G>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 17905
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19902
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7720
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 543
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

4-88016036-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016036
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016035
    reference: chr 4
allele count: 4
allele frequency: 3.325131342688036e-5
allele num: 120296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-30delG
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-30delG
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-30delG
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-30delG
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-30delG
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-30delG
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20199
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7693
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34622
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: TG
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

4-88016037-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016037
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016037
    reference: chr 4
allele count: 1
allele frequency: 8.314487162431821e-6
allele num: 120272
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-30G>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-30G>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-30G>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-30G>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-30G>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-30G>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20267
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

4-88016038-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016038
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016038
    reference: chr 4
allele count: 1
allele frequency: 8.312275568559649e-6
allele num: 120304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-29T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-29T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-29T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-29T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-29T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-29T>C
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7276
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7692
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

4-88016048-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016048
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016048
    reference: chr 4
allele count: 9
allele frequency: 7.467888081250622e-5
allele num: 120516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-19A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-19A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-19A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-19A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-19A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-19A>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7704
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

4-88016048-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016048
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016048
    reference: chr 4
allele count: 13
allele frequency: 1.078694945069534e-4
allele num: 120516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-19A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-19A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-19A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-19A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-19A>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-19A>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7704
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 37440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

4-88016052-TTCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016052
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016048
    reference: chr 4
allele count: 1
allele frequency: 8.29324929507381e-6
allele num: 120580
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-12_1229-9delTCTC
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-12_281-9delTCTC
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-12_1208-9delTCTC
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-12_122-9delTCTC
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-12_1142-9delTCTC
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-12_122-9delTCTC
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7308
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7687
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37880
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6808
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: TTCTC
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

4-88016054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016054
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016054
    reference: chr 4
allele count: 2
allele frequency: 1.658649859014762e-5
allele num: 120580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-13C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21158
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6803
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37868
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7687
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

4-88016056-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016056
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016056
    reference: chr 4
allele count: 2
allele frequency: 1.658209796703479e-5
allele num: 120612
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-11C>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-11C>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-11C>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-11C>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-11C>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-11C>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

4-88016056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016056
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016056
    reference: chr 4
allele count: 43
allele frequency: 3.565151062912479e-4
allele num: 120612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.281-11C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.122-11C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1142-11C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.122-11C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1229-11C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1208-11C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21213
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

4-88016080-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016080
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016080
    reference: chr 4
allele count: 84
allele frequency: 6.955715279387897e-4
allele num: 120764
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1242A>G
  hgvsp: ENST00000395146.4:c.1242A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.135A>G
  hgvsp: ENST00000511722.1:c.135A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.135A>G
  hgvsp: ENST00000544085.1:c.135A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.294A>G
  hgvsp: ENST00000514970.1:c.294A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1221A>G
  hgvsp: ENST00000307808.6:c.1221A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1155A>G
  hgvsp: ENST00000503477.1:c.1155A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21696
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7724
  bin: 9.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6870
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr414Thr
num of homozygotes: 1
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

4-88016089-AACTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016089
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016085
    reference: chr 4
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1236_1239delCTCA
  hgvsp: ENSP00000305689.6:p.His412GlnfsTer86
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1170_1173delCTCA
  hgvsp: ENSP00000424483.1:p.His390GlnfsTer?
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.150_153delCTCA
  hgvsp: ENSP00000440843.1:p.His50GlnfsTer86
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.309_312delCTCA
  hgvsp: ENSP00000424881.1:p.His103GlnfsTer86
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.150_153delCTCA
  hgvsp: ENSP00000424766.1:p.His50GlnfsTer86
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1257_1260delCTCA
  hgvsp: ENSP00000378578.4:p.His419GlnfsTer86
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21812
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7661
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His419GlnfsTer86
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: AACTC
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

4-88016092-TCAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016092
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016089
    reference: chr 4
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.148_150delCAC
  hgvsp: ENSP00000424766.1:p.His50del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1255_1257delCAC
  hgvsp: ENSP00000378578.4:p.His419del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1168_1170delCAC
  hgvsp: ENSP00000424483.1:p.His390del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1234_1236delCAC
  hgvsp: ENSP00000305689.6:p.His412del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.307_309delCAC
  hgvsp: ENSP00000424881.1:p.His103del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.148_150delCAC
  hgvsp: ENSP00000440843.1:p.His50del
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His419del
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TCAC
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

4-88016095-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016095
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016097
    reference: chr 4
allele count: 1
allele frequency: 8.286514526259965e-6
allele num: 120678
alternate allele: CTT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1258_1259insTT
  hgvsp: ENSP00000378578.4:p.Ser420PhefsTer87
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.310_311insTT
  hgvsp: ENSP00000424881.1:p.Ser104PhefsTer87
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.151_152insTT
  hgvsp: ENSP00000424766.1:p.Ser51PhefsTer87
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.151_152insTT
  hgvsp: ENSP00000440843.1:p.Ser51PhefsTer87
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1171_1172insTT
  hgvsp: ENSP00000424483.1:p.Ser391PhefsTer?
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1237_1238insTT
  hgvsp: ENSP00000305689.6:p.Ser413PhefsTer87
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser420PhefsTer87
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

4-88016099-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016099
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016099
    reference: chr 4
allele count: 2
allele frequency: 1.658374792703151e-5
allele num: 120600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1240A>G
  hgvsp: ENSP00000305689.6:p.Asn414Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.154A>G
  hgvsp: ENSP00000440843.1:p.Asn52Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1174A>G
  hgvsp: ENSP00000424483.1:p.Asn392Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1261A>G
  hgvsp: ENSP00000378578.4:p.Asn421Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.313A>G
  hgvsp: ENSP00000424881.1:p.Asn105Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.154A>G
  hgvsp: ENSP00000424766.1:p.Asn52Asp
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn421Asp
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

http://identifiers.org/exac.variant/4-88016103-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016103
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016103
    reference: chr 4
allele count: 1
allele frequency: 8.296138976920141e-6
allele num: 120538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1244C>A
  hgvsp: ENSP00000305689.6:p.Ser415Tyr
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.317C>A
  hgvsp: ENSP00000424881.1:p.Ser106Tyr
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1265C>A
  hgvsp: ENSP00000378578.4:p.Ser422Tyr
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1178C>A
  hgvsp: ENSP00000424483.1:p.Ser393Tyr
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.158C>A
  hgvsp: ENSP00000424766.1:p.Ser53Tyr
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.158C>A
  hgvsp: ENSP00000440843.1:p.Ser53Tyr
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7660
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser422Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-88016108-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016108
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016108
    reference: chr 4
allele count: 1
allele frequency: 8.315178526882972e-6
allele num: 120262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1249C>G
  hgvsp: ENSP00000305689.6:p.Gln417Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1183C>G
  hgvsp: ENSP00000424483.1:p.Gln395Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.322C>G
  hgvsp: ENSP00000424881.1:p.Gln108Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.163C>G
  hgvsp: ENSP00000440843.1:p.Gln55Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1270C>G
  hgvsp: ENSP00000378578.4:p.Gln424Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.163C>G
  hgvsp: ENSP00000424766.1:p.Gln55Glu
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7659
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln424Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

4-88016115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016115
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016115
    reference: chr 4
allele count: 1
allele frequency: 8.340283569641367e-6
allele num: 119900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.170C>T
  hgvsp: ENSP00000440843.1:p.Thr57Met
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1190C>T
  hgvsp: ENSP00000424483.1:p.Thr397Met
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1256C>T
  hgvsp: ENSP00000305689.6:p.Thr419Met
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.170C>T
  hgvsp: ENSP00000424766.1:p.Thr57Met
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1277C>T
  hgvsp: ENSP00000378578.4:p.Thr426Met
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.329C>T
  hgvsp: ENSP00000424881.1:p.Thr110Met
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37263
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr426Met
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

4-88016116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016116
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016116
    reference: chr 4
allele count: 19
allele frequency: 1.587805652588123e-4
allele num: 119662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.171G>A
  hgvsp: ENST00000544085.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1278G>A
  hgvsp: ENST00000395146.4:c.1278G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1191G>A
  hgvsp: ENST00000503477.1:c.1191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.171G>A
  hgvsp: ENST00000511722.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.330G>A
  hgvsp: ENST00000514970.1:c.330G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1257G>A
  hgvsp: ENST00000307808.6:c.1257G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21781
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7383
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7671
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr426Thr
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

4-88016121-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016121
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016121
    reference: chr 4
allele count: 2
allele frequency: 1.675406704977633e-5
allele num: 119374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.176C>T
  hgvsp: ENSP00000440843.1:p.Ser59Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1283C>T
  hgvsp: ENSP00000378578.4:p.Ser428Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.335C>T
  hgvsp: ENSP00000424881.1:p.Ser112Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1262C>T
  hgvsp: ENSP00000305689.6:p.Ser421Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1196C>T
  hgvsp: ENSP00000424483.1:p.Ser399Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.176C>T
  hgvsp: ENSP00000424766.1:p.Ser59Phe
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser428Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

4-88016122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016122
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016122
    reference: chr 4
allele count: 3
allele frequency: 2.514795379482623e-5
allele num: 119294
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1283+1G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.335+1G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.176+1G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1262+1G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1196+1G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.176+1G>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7658
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1283+1G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

4-88016134-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016134
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016136
    reference: chr 4
allele count: 3
allele frequency: 2.546689303904923e-5
allele num: 117800
alternate allele: CTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1283+17_1283+18dupTT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.335+17_335+18dupTT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1262+17_1262+18dupTT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1196+17_1196+18dupTT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.176+17_176+18dupTT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.176+17_176+18dupTT
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4385
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

4-88016134-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016134
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016134
    reference: chr 4
allele count: 1
allele frequency: 8.488964346349745e-6
allele num: 117800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.176+13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1283+13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1262+13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.335+13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1196+13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.176+13C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

4-88016152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016152
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016152
    reference: chr 4
allele count: 1
allele frequency: 8.614748449345278e-6
allele num: 116080
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.335+31T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.176+31T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1262+31T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.176+31T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1283+31T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1196+31T>C
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4453
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3998
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5414
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7650
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

4-88016162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016162
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016162
    reference: chr 4
allele count: 1
allele frequency: 8.729964730942487e-6
allele num: 114548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1196+41G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.176+41G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.176+41G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1262+41G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1283+41G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.335+41G>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6345
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3525
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6811
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 7649
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

4-88016168-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016168
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016168
    reference: chr 4
allele count: 2
allele frequency: 1.764384141715334e-5
allele num: 113354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.176+47G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1262+47G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.176+47G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1196+47G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1283+47G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.335+47G>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6842
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

4-88016170-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016170
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016170
    reference: chr 4
allele count: 2
allele frequency: 1.769191302655556e-5
allele num: 113046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.335+49A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1283+49A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1196+49A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1262+49A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.176+49A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.176+49A>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14429
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3568
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6881
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

4-88016172-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88016172
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88016172
    reference: chr 4
allele count: 2
allele frequency: 1.782372337581321e-5
allele num: 112210
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1283+51T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1196+51T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.176+51T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.335+51T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1262+51T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.176+51T>C
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14394
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10414
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6901
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5654
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genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 5466
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

4-88026740-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026740
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026740
    reference: chr 4
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-40A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-40A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-40A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-40A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-40A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-40A>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

4-88026741-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026741
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026741
    reference: chr 4
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-39T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-39T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-39T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-39T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-39T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-39T>C
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

4-88026745-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026745
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026745
    reference: chr 4
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-35A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-35A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-35A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-35A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-35A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-35A>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

4-88026747-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026747
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026747
    reference: chr 4
allele count: 5
allele frequency: 4.120992334954257e-5
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-33A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-33A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-33A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-33A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-33A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-33A>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40916
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

4-88026749-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026749
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026749
    reference: chr 4
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-31T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-31T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-31T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-31T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-31T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-31T>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8866
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
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genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

4-88026751-ATTC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026751
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026748
    reference: chr 4
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-24_1197-22delTCT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-24_1284-22delTCT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-24_336-22delTCT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-24_1263-22delTCT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-24_177-22delTCT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-24_177-22delTCT
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: ATTC
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

4-88026754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026754
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026754
    reference: chr 4
allele count: 14
allele frequency: 1.153839814066956e-4
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-26C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-26C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-26C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-26C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-26C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-26C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8316
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8885
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-88026755-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026755
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026755
    reference: chr 4
allele count: 16
allele frequency: 1.318608867644635e-4
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-25T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-25T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-25T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-25T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-25T>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-25T>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2494
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40941
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3404
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

4-88026765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026765
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026765
    reference: chr 4
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-15C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-15C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-15C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-15C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-15C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-15C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40954
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

4-88026766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026766
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026766
    reference: chr 4
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-14C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-14C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-14C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-14C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-14C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-14C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8896
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3021
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40956
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2502
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

4-88026767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026767
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026767
    reference: chr 4
allele count: 7
allele frequency: 5.767582888405511e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-13C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-13C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8362
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8238
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40963
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3790
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3412
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

4-88026771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026771
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026771
    reference: chr 4
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-9C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-9C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-9C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-9C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-9C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-9C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3780
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/4-88026773-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026773
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026773
    reference: chr 4
allele count: 8
allele frequency: 6.590545861961017e-5
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1197-7A>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.177-7A>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.336-7A>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1284-7A>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1263-7A>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.177-7A>C
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8239
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3035
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1284-7A>C
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-88026782-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026782
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026782
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1199T>A
  hgvsp: ENSP00000424483.1:p.Met400Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.179T>A
  hgvsp: ENSP00000424766.1:p.Met60Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.179T>A
  hgvsp: ENSP00000440843.1:p.Met60Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1265T>A
  hgvsp: ENSP00000305689.6:p.Met422Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1286T>A
  hgvsp: ENSP00000378578.4:p.Met429Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.338T>A
  hgvsp: ENSP00000424881.1:p.Met113Lys
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met429Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

4-88026782-TGCTCGAAGACGACCTTCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026782
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026764
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsp: ENSP00000424766.1:p.Glu62_Leu67del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsp: ENSP00000305689.6:p.Glu424_Leu429del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsp: ENSP00000378578.4:p.Glu431_Leu436del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsp: ENSP00000424881.1:p.Glu115_Leu120del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsp: ENSP00000424483.1:p.Glu402_Leu407del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsp: ENSP00000440843.1:p.Glu62_Leu67del
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu431_Leu436del
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: TGCTCGAAGACGACCTTCA
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

4-88026784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026784
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026784
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1288C>T
  hgvsp: ENSP00000378578.4:p.Leu430Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.181C>T
  hgvsp: ENSP00000424766.1:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.340C>T
  hgvsp: ENSP00000424881.1:p.Leu114Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1201C>T
  hgvsp: ENSP00000424483.1:p.Leu401Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.181C>T
  hgvsp: ENSP00000440843.1:p.Leu61Phe
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1267C>T
  hgvsp: ENSP00000305689.6:p.Leu423Phe
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu430Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

4-88026786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026786
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026786
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.183C>T
  hgvsp: ENST00000544085.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.183C>T
  hgvsp: ENST00000511722.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.342C>T
  hgvsp: ENST00000514970.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1269C>T
  hgvsp: ENST00000307808.6:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1203C>T
  hgvsp: ENST00000503477.1:c.1203C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1290C>T
  hgvsp: ENST00000395146.4:c.1290C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40979
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu430Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

4-88026787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026787
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026787
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.343G>A
  hgvsp: ENSP00000424881.1:p.Glu115Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1204G>A
  hgvsp: ENSP00000424483.1:p.Glu402Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.184G>A
  hgvsp: ENSP00000424766.1:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.184G>A
  hgvsp: ENSP00000440843.1:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1291G>A
  hgvsp: ENSP00000378578.4:p.Glu431Lys
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1270G>A
  hgvsp: ENSP00000305689.6:p.Glu424Lys
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40981
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu431Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

4-88026789-AGAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026789
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026786
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1210_1212delGAC
  hgvsp: ENSP00000424483.1:p.Asp404del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.190_192delGAC
  hgvsp: ENSP00000440843.1:p.Asp64del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.349_351delGAC
  hgvsp: ENSP00000424881.1:p.Asp117del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1276_1278delGAC
  hgvsp: ENSP00000305689.6:p.Asp426del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.190_192delGAC
  hgvsp: ENSP00000424766.1:p.Asp64del
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1297_1299delGAC
  hgvsp: ENSP00000378578.4:p.Asp433del
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp433del
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: AGAC
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

4-88026792-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026792
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026792
    reference: chr 4
allele count: 5
allele frequency: 4.118819711023609e-5
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1209C>T
  hgvsp: ENST00000503477.1:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.189C>T
  hgvsp: ENST00000544085.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.189C>T
  hgvsp: ENST00000511722.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1275C>T
  hgvsp: ENST00000307808.6:c.1275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.348C>T
  hgvsp: ENST00000514970.1:c.348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1296C>T
  hgvsp: ENST00000395146.4:c.1296C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp432Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

4-88026800-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026800
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026800
    reference: chr 4
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.356A>T
  hgvsp: ENSP00000424881.1:p.Gln119Leu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.197A>T
  hgvsp: ENSP00000424766.1:p.Gln66Leu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.197A>T
  hgvsp: ENSP00000440843.1:p.Gln66Leu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1217A>T
  hgvsp: ENSP00000424483.1:p.Gln406Leu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1304A>T
  hgvsp: ENSP00000378578.4:p.Gln435Leu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1283A>T
  hgvsp: ENSP00000305689.6:p.Gln428Leu
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8907
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln435Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

4-88026807-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026807
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026807
    reference: chr 4
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.363T>C
  hgvsp: ENST00000514970.1:c.363T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.204T>C
  hgvsp: ENST00000511722.1:c.204T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1224T>C
  hgvsp: ENST00000503477.1:c.1224T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.204T>C
  hgvsp: ENST00000544085.1:c.204T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1311T>C
  hgvsp: ENST00000395146.4:c.1311T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1290T>C
  hgvsp: ENST00000307808.6:c.1290T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser437Ser
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

4-88026816-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026816
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026816
    reference: chr 4
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.213G>T
  hgvsp: ENSP00000440843.1:p.Glu71Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.372G>T
  hgvsp: ENSP00000424881.1:p.Glu124Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1233G>T
  hgvsp: ENSP00000424483.1:p.Glu411Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1320G>T
  hgvsp: ENSP00000378578.4:p.Glu440Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1299G>T
  hgvsp: ENSP00000305689.6:p.Glu433Asp
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.213G>T
  hgvsp: ENSP00000424766.1:p.Glu71Asp
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40987
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu440Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

4-88026825-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026825
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026825
    reference: chr 4
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.222C>G
  hgvsp: ENSP00000440843.1:p.Asp74Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424483
  ensembl transcript: ENST00000503477
  gene symbol: AFF1
  hgvsc: ENST00000503477.1:c.1242C>G
  hgvsp: ENSP00000424483.1:p.Asp414Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1308C>G
  hgvsp: ENSP00000305689.6:p.Asp436Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.222C>G
  hgvsp: ENSP00000424766.1:p.Asp74Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.381C>G
  hgvsp: ENSP00000424881.1:p.Asp127Glu
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1329C>G
  hgvsp: ENSP00000378578.4:p.Asp443Glu
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp443Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

4-88026839-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026839
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026838
    reference: chr 4
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1338+6delT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.231+6delT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.390+6delT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.231+6delT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1317+6delT
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3740
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40991
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1338+6delT
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: GT
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-88026843-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026843
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026843
    reference: chr 4
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1317+9T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1338+9T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.231+9T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.390+9T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.231+9T>C
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40992
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

4-88026844-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026844
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026844
    reference: chr 4
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1338+10G>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.390+10G>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.231+10G>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.231+10G>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1317+10G>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3052
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 3737
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

4-88026845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026845
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026845
    reference: chr 4
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1338+11C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.390+11C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.231+11C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1317+11C>T
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.231+11C>T
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6181
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 8909
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genotype depth: GenotypeDepth
  all individuals: 8403
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1476
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS

4-88026859-C-CCAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026859
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026863
    reference: chr 4
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: CCAGG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1338+26_1338+29dupCAGG
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.231+26_231+29dupCAGG
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1317+26_1317+29dupCAGG
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.390+26_390+29dupCAGG
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.231+26_231+29dupCAGG
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
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genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40995
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-88026862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026862
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026862
    reference: chr 4
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.231+28G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.231+28G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1317+28G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.390+28G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1338+28G>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40994
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2506
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

4-88026879-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026879
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026879
    reference: chr 4
allele count: 4
allele frequency: 3.295218637756615e-5
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.390+45A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.231+45A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1317+45A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.231+45A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1338+45A>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8414
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41005
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3417
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-88026881-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026881
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026881
    reference: chr 4
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1338+47C>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.390+47C>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1317+47C>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.231+47C>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.231+47C>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8934
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41004
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3056
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

4-88026886-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026886
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026886
    reference: chr 4
allele count: 2215
allele frequency: 1.824757385530457e-2
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.231+52A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.390+52A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.231+52A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1338+52A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1317+52A>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 8.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 4.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 9.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 6.75e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3755
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 8.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 7.25e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 3233
  bin: 9.75e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.75e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 5.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1628
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 231
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/4-88026909-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026909
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026909
    reference: chr 4
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.232-51C>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.391-51C>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1339-51C>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1318-51C>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.232-51C>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2240
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genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45256
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

4-88026934-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026934
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026934
    reference: chr 4
allele count: 11
allele frequency: 9.060209208467177e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1318-26T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.232-26T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.232-26T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1339-26T>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.391-26T>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
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genotype depth: GenotypeDepth
  all individuals: 5672
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5533
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  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 1520
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

4-88026940-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026940
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026940
    reference: chr 4
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.391-20C>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1339-20C>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.232-20C>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1318-20C>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.232-20C>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
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genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 4085
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2730
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

4-88026942-C-CTTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026942
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026945
    reference: chr 4
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: CTTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1318-15_1318-13dupATT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.232-15_232-13dupATT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.391-15_391-13dupATT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.232-15_232-13dupATT
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1339-15_1339-13dupATT
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

4-88026945-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026945
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026945
    reference: chr 4
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1318-15A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.232-15A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.391-15A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1339-15A>G
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.232-15A>G
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45249
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-88026946-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026946
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026946
    reference: chr 4
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1339-14T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.391-14T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.232-14T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1318-14T>C
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.232-14T>C
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

4-88026948-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 88026948
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 88026948
    reference: chr 4
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424766
  ensembl transcript: ENST00000511722
  gene symbol: AFF1
  hgvsc: ENST00000511722.1:c.232-12G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000440843
  ensembl transcript: ENST00000544085
  gene symbol: AFF1
  hgvsc: ENST00000544085.1:c.232-12G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000424881
  ensembl transcript: ENST00000514970
  gene symbol: AFF1
  hgvsc: ENST00000514970.1:c.391-12G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000305689
  ensembl transcript: ENST00000307808
  gene symbol: AFF1
  hgvsc: ENST00000307808.6:c.1318-12G>A
  variant of: http://identifiers.org/hgnc/7135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172493
  ensembl protein: ENSP00000378578
  ensembl transcript: ENST00000395146
  gene symbol: AFF1
  hgvsc: ENST00000395146.4:c.1339-12G>A
  variant of: http://identifiers.org/hgnc/7135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45248
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25755
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512630464377553e-5
allele num: 66110
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.452e0

MQRankSum
type: SiteQuality
SIO_000300: -1.347e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.558e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.887e0

DP
type: SiteQuality
SIO_000300: 2.089238e6

QD
type: SiteQuality
SIO_000300: 1.44e1

GenotypeQuality
all individuals: 1526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2677
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7717
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 869
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51372952680815e-5
allele num: 66062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.091193e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.93e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1697
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7714
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 585
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.230163611760364e-4
allele num: 16258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.093299e6

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.846e0

FS
type: SiteQuality
SIO_000300: 2.883e0

QD
type: SiteQuality
SIO_000300: 1.074e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

GenotypeQuality
all individuals: 585
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.150818058801821e-5
allele num: 16258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

FS
type: SiteQuality
SIO_000300: 2.883e0

QD
type: SiteQuality
SIO_000300: 1.074e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.846e0

DP
type: SiteQuality
SIO_000300: 2.093299e6

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

GenotypeQuality
all individuals: 6646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026451183342413e-5
allele num: 66084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.701202949165696e-5
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.617e0

DP
type: SiteQuality
SIO_000300: 2.095299e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.498e0

FS
type: SiteQuality
SIO_000300: 1.777e0

QD
type: SiteQuality
SIO_000300: 4.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.172e0

GenotypeQuality
all individuals: 469
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 5.44151878835515e-4
allele num: 66158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.75284837861525e-4
allele num: 11410
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

DP
type: SiteQuality
SIO_000300: 2.116403e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.716e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.877471888328809e-4
allele num: 10316
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.49e-1

QD
type: SiteQuality
SIO_000300: 2.214e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 2.125377e6

GenotypeQuality
all individuals: 609
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7690
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511076188461422e-5
allele num: 66178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.974e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 2.127738e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

FS
type: SiteQuality
SIO_000300: 7.037e0

VQSLOD
type: SiteQuality
SIO_000300: 4.54e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

QD
type: SiteQuality
SIO_000300: 1.142e1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510847887834653e-5
allele num: 66188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.129893e6

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

FS
type: SiteQuality
SIO_000300: 9.66e0

VQSLOD
type: SiteQuality
SIO_000300: -8.953e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.14e-1

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

GenotypeQuality
all individuals: 37440
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.744433688286545e-4
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

FS
type: SiteQuality
SIO_000300: 1.251e0

QD
type: SiteQuality
SIO_000300: 1.252e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 2.14735e6

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6795
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.508820798514392e-3
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 1.252e1

VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

FS
type: SiteQuality
SIO_000300: 1.251e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

DP
type: SiteQuality
SIO_000300: 2.14735e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 1994
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.122199093914534e-5
allele num: 16334
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.993e1

FS
type: SiteQuality
SIO_000300: 1.479e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 2.150461e6

QD
type: SiteQuality
SIO_000300: 8.19e0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 2.854e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.54e0

QD
type: SiteQuality
SIO_000300: 1.346e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.391e-1

MQ
type: SiteQuality
SIO_000300: 5.999e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

DP
type: SiteQuality
SIO_000300: 2.152276e6

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7712
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507068149621726e-5
allele num: 66354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 5.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.087e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

FS
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 2.154393e6

QD
type: SiteQuality
SIO_000300: 1.222e1

GenotypeQuality
all individuals: 6815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7712
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 42
allele frequency: 4.064253919101994e-3
allele num: 10334
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.732099196646873e-5
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

DP
type: SiteQuality
SIO_000300: 2.154393e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66436
num of homozygotes: 0

African
type: Population
allele count: 82
allele frequency: 7.918115102356122e-3
allele num: 10356
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

DP
type: SiteQuality
SIO_000300: 2.163543e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.291e1

FS
type: SiteQuality
SIO_000300: 5.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

GenotypeQuality
all individuals: 899
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505661286437003e-5
allele num: 66416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.736e1

DP
type: SiteQuality
SIO_000300: 2.160038e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.194e0

MQRankSum
type: SiteQuality
SIO_000300: -1.311e0

QD
type: SiteQuality
SIO_000300: 6.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.835e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6878
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7661
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110228522546743e-5
allele num: 16366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.035e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 2.159894e6

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38394
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7660
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1408
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.114711997064938e-5
allele num: 16354
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.159371e6

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.83e-1

QD
type: SiteQuality
SIO_000300: 7.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1987
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7661
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014681498899641e-5
allele num: 66342
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.158254e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.106e0

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

FS
type: SiteQuality
SIO_000300: 4.203e0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1750
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.120700208103807e-5
allele num: 16338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.892e0

DP
type: SiteQuality
SIO_000300: 2.157734e6

MQRankSum
type: SiteQuality
SIO_000300: -8.39e-1

FS
type: SiteQuality
SIO_000300: 8.67e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 8.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 1008
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37714
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66138
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.756567425569177e-5
allele num: 11420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.138e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

DP
type: SiteQuality
SIO_000300: 2.152776e6

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.406e1

VQSLOD
type: SiteQuality
SIO_000300: -9.021e-1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7659
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1718
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516806212838248e-5
allele num: 65928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.944e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.145617e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.308e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.268e1

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6612
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.466395363176717e-4
allele num: 16218
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.215990272077823e-4
allele num: 65790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.834602616676431e-4
allele num: 10242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

FS
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 1.223e1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.601e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

DP
type: SiteQuality
SIO_000300: 2.140617e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

GenotypeQuality
all individuals: 1929
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7658
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.049245311785333e-5
allele num: 65590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.738e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.798e0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.189e0

QD
type: SiteQuality
SIO_000300: 6.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.839e1

DP
type: SiteQuality
SIO_000300: 2.133697e6

GenotypeQuality
all individuals: 2112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6532
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.051944088384301e-5
allele num: 65532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.181233774261343e-5
allele num: 16178
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.94e-1

FS
type: SiteQuality
SIO_000300: 9.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.074e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.697e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 2.131105e6

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1862
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7654
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.648280136349551e-5
allele num: 64540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.447e1

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

DP
type: SiteQuality
SIO_000300: 2.071719e6

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

MQ
type: SiteQuality
SIO_000300: 6.078e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

GenotypeQuality
all individuals: 391
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7654
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1627
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549426712116517e-5
allele num: 64540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.078e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

QD
type: SiteQuality
SIO_000300: 1.447e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

DP
type: SiteQuality
SIO_000300: 2.071719e6

GenotypeQuality
all individuals: 1185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.324310650139134e-5
allele num: 15812
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.916487e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.317e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.17e-1

GenotypeQuality
all individuals: 343
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11995
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3086
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599692858971077e-5
allele num: 62512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15636
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

VQSLOD
type: SiteQuality
SIO_000300: -2.835e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.59e0

DP
type: SiteQuality
SIO_000300: 1.834803e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 1174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7729
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7649
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6563
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
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variant carriers: 0

GenotypeQuality
all individuals: 6940
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.289823294208693e-4
allele num: 15506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10868
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.379e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.669e0

MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

QD
type: SiteQuality
SIO_000300: 1.438e1

FS
type: SiteQuality
SIO_000300: 2.349e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

DP
type: SiteQuality
SIO_000300: 1.811277e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1600
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7648
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 411
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variant carriers: 0

GenotypeQuality
all individuals: 5332
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.463054187192118e-4
allele num: 8120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.806618e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

QD
type: SiteQuality
SIO_000300: 1.511e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1867
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variant carriers: 0

GenotypeQuality
all individuals: 1498
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variant carriers: 0

GenotypeQuality
all individuals: 3517
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7649
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.276862076875184e-5
allele num: 61034
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15394
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

DP
type: SiteQuality
SIO_000300: 1.803304e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.88e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

GenotypeQuality
all individuals: 3167
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 40893
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variant carriers: 1

GenotypeQuality
all individuals: 1995
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variant carriers: 0

GenotypeQuality
all individuals: 1610
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 2417
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.957e-1

DP
type: SiteQuality
SIO_000300: 2.874734e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.336e0

FS
type: SiteQuality
SIO_000300: 3.081e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.55e-1

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 3172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.42e0

InbreedingCoeff
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SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.875294e6

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.363e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.201e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.996821684507211e-5
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.298e1

FS
type: SiteQuality
SIO_000300: 7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.635e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
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SIO_000300: 3.26e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 2.879526e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 7.67e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.880089e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
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SIO_000300: 4.68e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.28e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2030
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GenotypeQuality
all individuals: 1635
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

DP
type: SiteQuality
SIO_000300: 2.881095e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 2.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

MQ
type: SiteQuality
SIO_000300: 6.023e1

QD
type: SiteQuality
SIO_000300: 1.184e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.26e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.346930921685588e-3
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 2.882211e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
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allele count: 16
allele frequency: 1.383843625670299e-3
allele num: 11562
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
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VQSLOD
type: SiteQuality
SIO_000300: 5.79e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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South Asian
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Other
type: Population
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num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 7
allele frequency: 4.240882103477523e-4
allele num: 16506
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele num: 66726
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
type: Population
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allele num: 908
num of homozygotes: 0

Latino
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
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South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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VQSLOD
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQ
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 4.84613520717228e-4
allele num: 16508
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11564
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

VQSLOD
type: SiteQuality
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MQ
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SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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QD
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FS
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

East Asian
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allele num: 8654
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66738
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South Asian
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InbreedingCoeff
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FS
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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DP
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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allele count: 0
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European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
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East Asian
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Other
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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FS
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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Other
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European (Finnish)
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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allele frequency: 0.0e0
allele num: 908
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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East Asian
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allele frequency: 1.155535012710885e-4
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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SIO_000300: -1.0e-4

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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African
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Other
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 4.8e-2

MQRankSum
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QD
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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num of homozygotes: 0

European (Finnish)
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East Asian
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South Asian
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Latino
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Other
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European (Non-Finnish)
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VQSLOD
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QD
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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allele num: 11566
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Other
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Other
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African
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Latino
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

MQ
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DP
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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MQ
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FS
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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East Asian
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Other
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South Asian
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allele num: 16510
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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MQ
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MQRankSum
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QD
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ClippingRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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Other
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African
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allele num: 10406
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Latino
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
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num of homozygotes: 0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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FS
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
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European (Finnish)
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African
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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Other
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num of homozygotes: 0

East Asian
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VQSLOD
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FS
type: SiteQuality
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QD
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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Latino
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Other
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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QD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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MQ
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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East Asian
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Latino
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European (Non-Finnish)
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Other
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DP
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QD
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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African
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
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ClippingRankSum
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SIO_000300: 8.92e-1

VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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FS
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SIO_000300: 9.914999999999999e0

BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 3.454828122300915e-4
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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South Asian
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European (Non-Finnish)
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allele count: 6
allele frequency: 8.990380293086398e-5
allele num: 66738
num of homozygotes: 0

Other
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East Asian
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QD
type: SiteQuality
SIO_000300: 1.432e1

FS
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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Other
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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DP
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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Latino
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ClippingRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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DP
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QD
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GenotypeQuality
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variant carriers: 0