http://identifiers.org/exac.variant/2-31337567-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31337567
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31337565
    reference: chr 2
allele count: 1
allele frequency: 6.16294835449279e-5
allele num: 16226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+32219_388+32220delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+17927_*65+17928delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.69+40_69+41delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.358+40_358+41delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+10451_198+10452delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+10451_201+10452delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.314+40_314+41delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+23255_129+23256delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+10451_164+10452delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+23255_129+23256delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+23255_129+23256delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+10451_157+10452delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+23255_-110+23256delTT
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+14574_364+14575delTT
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: CAA
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

2-31337572-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31337572
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31337572
    reference: chr 2
allele count: 2
allele frequency: 1.228954160009832e-4
allele num: 16274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+10448C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+23252C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.69+37C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+23252C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+10448C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+32216C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+14571C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.314+37C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+23252C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+10448C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+17924C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.358+37C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+23252C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+10448C>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

2-31337574-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31337574
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31337574
    reference: chr 2
allele count: 1
allele frequency: 6.140997297961189e-5
allele num: 16284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+23250C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+10446C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.69+35C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+23250C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+10446C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.358+35C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.314+35C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+23250C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+14569C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+17922C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+32214C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+10446C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+10446C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+23250C>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

2-31337721-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31337721
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31337721
    reference: chr 2
allele count: 1
allele frequency: 6.089392278650591e-5
allele num: 16422
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+23103A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.274-28A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+23103A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+23103A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+32067A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.230-28A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+23103A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+10299A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+10299A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+10299A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-16-28A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+17775A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+14422A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+10299A>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

2-31337737-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31337737
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31337737
    reference: chr 2
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-16-44C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+10283C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+23087C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+14406C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+10283C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.274-44C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+17759C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+10283C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+32051C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+23087C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+23087C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.230-44C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+23087C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+10283C>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

2-31347984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31347984
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31347984
    reference: chr 2
allele count: 54
allele frequency: 3.40780007572889e-3
allele num: 15846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21804C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12840C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12840C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.229+36C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+36C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-17+36C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+36C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12840C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4159C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7512C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.273+36C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+36C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12840C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+36C>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

2-31347993-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31347993
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31347993
    reference: chr 2
allele count: 1
allele frequency: 6.285355122564425e-5
allele num: 15910
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+27T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12831T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.229+27T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+27T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+27T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.273+27T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12831T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4150T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-17+27T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21795T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12831T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7503T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12831T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+27T>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

2-31348006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348006
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348006
    reference: chr 2
allele count: 1
allele frequency: 6.243756243756244e-5
allele num: 16016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21782G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.229+14G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+14G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+14G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12818G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-17+14G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+14G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12818G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+14G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4137G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.273+14G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12818G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12818G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7490G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-31348008-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348008
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348008
    reference: chr 2
allele count: 1
allele frequency: 6.232859636000998e-5
allele num: 16044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-17+12G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4135G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12816G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21780G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12816G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+12G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12816G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+12G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7488G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+12G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.273+12G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.229+12G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12816G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+12G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-31348017-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348017
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348017
    reference: chr 2
allele count: 92
allele frequency: 5.69447883139391e-3
allele num: 16156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.201+3A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.198+3A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12807A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-17+3A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12807A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.229+3A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4126A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.164+3A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12807A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.273+3A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12807A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.157+3A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7479A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21771A>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
hgvs: c.229+3A>G
num of homozygotes: 5
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-31348036-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348036
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348036
    reference: chr 2
allele count: 1
allele frequency: 6.124448799608035e-5
allele num: 16328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-33A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.148A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12788A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12788A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4107A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.213A>T
  hgvsp: ENSP00000314500.5:p.Arg71Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7460A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.185A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.182A>T
  hgvsp: ENSP00000399886.1:p.Arg61Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21752A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.141A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.257A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12788A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12788A>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg71Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-31348064-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348064
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348064
    reference: chr 2
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12760C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21724C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12760C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.185C>T
  hgvsp: ENSP00000314500.5:p.Pro62Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.154C>T
  hgvsp: ENSP00000399886.1:p.Pro52Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12760C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12760C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.157C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.113C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.229C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.120C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7432C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-61C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4079C>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro62Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

2-31348075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348075
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348075
    reference: chr 2
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.174G>A
  hgvsp: ENST00000324589.5:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21713G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4068G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-72G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12749G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.102G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.109G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.146G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.218G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.143G>A
  hgvsp: ENST00000455477.1:c.143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12749G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7421G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12749G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12749G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala58Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

2-31348076-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348076
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348076
    reference: chr 2
allele count: 102
allele frequency: 6.219512195121952e-3
allele num: 16400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12748C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.217C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.145C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.108C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4067C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12748C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-73C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7420C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12748C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.173C>T
  hgvsp: ENSP00000314500.5:p.Ala58Val
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.142C>T
  hgvsp: ENSP00000399886.1:p.Ala48Val
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.101C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21712C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12748C>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala58Val
num of homozygotes: 1
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-31348100-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348100
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348100
    reference: chr 2
allele count: 1
allele frequency: 6.137228427642077e-5
allele num: 16294
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.149A>G
  hgvsp: ENSP00000314500.5:p.Lys50Arg
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.77A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-97A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.121A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21688A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4043A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7396A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12724A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.193A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12724A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.118A>G
  hgvsp: ENSP00000399886.1:p.Lys40Arg
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12724A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12724A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.84A>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys50Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-31348119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348119
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348119
    reference: chr 2
allele count: 2
allele frequency: 1.240694789081886e-4
allele num: 16120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21669G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12705G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.102G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12705G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7377G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.99G>A
  hgvsp: ENSP00000399886.1:p.Val34Ile
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.65G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4024G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-116G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.130G>A
  hgvsp: ENSP00000314500.5:p.Val44Ile
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12705G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12705G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.58G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.174G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val44Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-31348133-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31348133
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31348133
    reference: chr 2
allele count: 1
allele frequency: 6.257039169065198e-5
allele num: 15982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000490212
  gene symbol: GALNT14
  hgvsc: ENST00000490212.1:n.364+4010T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.130-14T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000496397
  gene symbol: GALNT14
  hgvsc: ENST00000496397.1:n.102-14T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*65+7363T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.99-14T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+12691T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+12691T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+21655T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000498206
  gene symbol: GALNT14
  hgvsc: ENST00000498206.1:n.174-14T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000385435
  ensembl transcript: ENST00000406653
  gene symbol: GALNT14
  hgvsc: ENST00000406653.1:c.-116-14T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+12691T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.65-14T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.58-14T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+12691T>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-31355524-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31355524
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31355524
    reference: chr 2
allele count: 1
allele frequency: 7.296074711805048e-5
allele num: 13706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+5300G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+5300G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+5300G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+5300G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.58-7405G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+5300G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+5300G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*37G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+14264G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+5300G>C
  variant of: http://identifiers.org/hgnc/22946
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

2-31355531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31355531
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31355531
    reference: chr 2
allele count: 1
allele frequency: 7.272727272727273e-5
allele num: 13750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+5293C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+5293C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+5293C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+14257C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+5293C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+5293C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*30C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.58-7412C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+5293C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+5293C>T
  variant of: http://identifiers.org/hgnc/22946
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-31355544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31355544
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31355544
    reference: chr 2
allele count: 5
allele frequency: 3.616374945754376e-4
allele num: 13826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+5280G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.58-7425G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+14244G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+5280G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+5280G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+5280G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+5280G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.*17G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+5280G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+5280G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

2-31355594-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31355594
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31355594
    reference: chr 2
allele count: 1
allele frequency: 7.129616426636246e-5
allele num: 14026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+5230T>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.99-16T>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+5230T>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.58-7475T>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+14194T>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+5230T>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+5230T>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+5230T>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+5230T>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+5230T>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

2-31355601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31355601
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31355601
    reference: chr 2
allele count: 4
allele frequency: 2.854288568574283e-4
allele num: 14014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+5223G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+5223G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+14187G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+5223G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+5223G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+5223G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.58-7482G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+5223G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+5223G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.99-23G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

2-31360779-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360779
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360779
    reference: chr 2
allele count: 1
allele frequency: 1.971453355413611e-5
allele num: 50724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+45G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+9009G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+9009G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+45G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+45G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+45G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+45G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+45G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+45G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+45G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24228
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10037
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4751
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-31360782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360782
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360782
    reference: chr 2
allele count: 1
allele frequency: 1.959554789151905e-5
allele num: 51032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+42C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+42C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+42C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+42C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+42C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+9006C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+9006C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+42C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+42C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+42C>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24392
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13891
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-31360787-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360787
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360787
    reference: chr 2
allele count: 1
allele frequency: 1.896885314313896e-5
allele num: 52718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+37G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+37G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+37G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+37G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+9001G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+9001G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+37G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+37G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+37G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+37G>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-31360802-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360802
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360802
    reference: chr 2
allele count: 20
allele frequency: 3.324026060364313e-4
allele num: 60168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+22T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+22T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+22T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8986T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+22T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+22T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8986T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+22T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+22T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+22T>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11174
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11383
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25923
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25378
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-31360803-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360803
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360803
    reference: chr 2
allele count: 21
allele frequency: 3.47820325957334e-4
allele num: 60376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8985C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+21C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+21C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+21C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+21C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8985C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+21C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+21C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+21C>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25804
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11361
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4257
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/2-31360804-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360804
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360804
    reference: chr 2
allele count: 1
allele frequency: 1.646144729044577e-5
allele num: 60748
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+20G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+20G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8984G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+20G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+20G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+20G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8984G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+20G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+20G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+20G>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

2-31360807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360807
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360807
    reference: chr 2
allele count: 1
allele frequency: 1.580028440511929e-5
allele num: 63290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+17C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+17C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+17C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+17C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+17C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8981C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+17C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8981C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+17C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+17C>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/2-31360809-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360809
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360809
    reference: chr 2
allele count: 1
allele frequency: 1.533272002453235e-5
allele num: 65220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8979G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+15G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+15G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+15G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+15G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+15G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8979G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+15G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+15G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+15G>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14612
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

2-31360809-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360809
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360809
    reference: chr 2
allele count: 2
allele frequency: 3.06654400490647e-5
allele num: 65220
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+15G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+15G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8979G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+15G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+15G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+15G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+15G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+15G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+15G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8979G>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14612
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24187
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/2-31360817-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360817
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360817
    reference: chr 2
allele count: 1
allele frequency: 1.312232632601107e-5
allele num: 76206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+7G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8971G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+7G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+7G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+7G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8971G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+7G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+7G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+7G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+7G>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21078
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
hgvs: c.129+7G>T
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-31360822-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360822
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360822
    reference: chr 2
allele count: 1
allele frequency: 1.187592038382975e-5
allele num: 84204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8966T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+2T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+2T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+2T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+2T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+2T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8966T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+2T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+2T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+2T>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25705
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
hgvs: c.129+2T>C
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

2-31360823-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360823
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360823
    reference: chr 2
allele count: 1
allele frequency: 1.169016389609782e-5
allele num: 85542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110+1G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8965G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129+1G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129+1G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98+1G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64+1G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129+1G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129+1G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98+1G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8965G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16964
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 7.25e1
  variant carriers: 0
hgvs: c.129+1G>A
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/2-31360824-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360824
    reference: chr 2
allele count: 2
allele frequency: 2.302449806594216e-5
allele num: 86864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98G>T
  hgvsp: ENSP00000398723.1:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129G>T
  hgvsp: ENSP00000406399.1:p.Lys43Asn
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129G>T
  hgvsp: ENSP00000348497.3:p.Lys43Asn
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129G>T
  hgvsp: ENSP00000288988.6:p.Lys43Asn
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129G>T
  hgvsp: ENSP00000314500.5:p.Lys43Asn
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98G>T
  hgvsp: ENSP00000399886.1:p.Lys33Asn
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8964G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8964G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110G>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28027
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys43Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

2-31360824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360824
    reference: chr 2
allele count: 1
allele frequency: 1.151224903297108e-5
allele num: 86864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-110G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.129G>A
  hgvsp: ENST00000356174.3:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.129G>A
  hgvsp: ENST00000349752.5:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8964G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.129G>A
  hgvsp: ENST00000324589.5:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.129G>A
  hgvsp: ENST00000430167.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.98G>A
  hgvsp: ENST00000455477.1:c.98G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.98G>A
  hgvsp: ENST00000424136.1:c.98G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.64G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8964G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.129G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

2-31360835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360835
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360835
    reference: chr 2
allele count: 1
allele frequency: 1.003955585004919e-5
allele num: 99606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.118C>T
  hgvsp: ENSP00000348497.3:p.Gln40Ter
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-121C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.118C>T
  hgvsp: ENSP00000406399.1:p.Gln40Ter
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.118C>T
  hgvsp: ENSP00000288988.6:p.Gln40Ter
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.118C>T
  hgvsp: ENSP00000314500.5:p.Gln40Ter
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.87C>T
  hgvsp: ENSP00000398723.1:p.Gln30Ter
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.87C>T
  hgvsp: ENSP00000399886.1:p.Gln30Ter
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.53C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8953C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8953C>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln40Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

2-31360840-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360840
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360840
    reference: chr 2
allele count: 1
allele frequency: 9.519820265793382e-6
allele num: 105044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.82A>C
  hgvsp: ENSP00000398723.1:p.Glu28Ala
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8948A>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-126A>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8948A>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.113A>C
  hgvsp: ENSP00000406399.1:p.Glu38Ala
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.113A>C
  hgvsp: ENSP00000288988.6:p.Glu38Ala
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.113A>C
  hgvsp: ENSP00000314500.5:p.Glu38Ala
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.113A>C
  hgvsp: ENSP00000348497.3:p.Glu38Ala
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.82A>C
  hgvsp: ENSP00000399886.1:p.Glu28Ala
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.48A>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu38Ala
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

2-31360843-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360843
    reference: chr 2
allele count: 3
allele frequency: 2.781847517664732e-5
allele num: 107842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.110C>T
  hgvsp: ENSP00000288988.6:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.45C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.110C>T
  hgvsp: ENSP00000406399.1:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8945C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-129C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.110C>T
  hgvsp: ENSP00000348497.3:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.79C>T
  hgvsp: ENSP00000398723.1:p.Pro27Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8945C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.110C>T
  hgvsp: ENSP00000314500.5:p.Pro37Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.79C>T
  hgvsp: ENSP00000399886.1:p.Pro27Leu
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8502
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro37Leu
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

2-31360852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360852
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360852
    reference: chr 2
allele count: 1
allele frequency: 8.717939776472025e-6
allele num: 114706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.101C>T
  hgvsp: ENSP00000288988.6:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.101C>T
  hgvsp: ENSP00000314500.5:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.101C>T
  hgvsp: ENSP00000348497.3:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.70C>T
  hgvsp: ENSP00000399886.1:p.Pro24Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.36C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8936C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.70C>T
  hgvsp: ENSP00000398723.1:p.Pro24Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.101C>T
  hgvsp: ENSP00000406399.1:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-138C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8936C>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro34Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

2-31360858-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360858
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360858
    reference: chr 2
allele count: 1
allele frequency: 8.528930131004366e-6
allele num: 117248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.95A>G
  hgvsp: ENSP00000288988.6:p.Glu32Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.95A>G
  hgvsp: ENSP00000348497.3:p.Glu32Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.64A>G
  hgvsp: ENSP00000399886.1:p.Glu22Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.95A>G
  hgvsp: ENSP00000314500.5:p.Glu32Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8930A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.95A>G
  hgvsp: ENSP00000406399.1:p.Glu32Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.64A>G
  hgvsp: ENSP00000398723.1:p.Glu22Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8930A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-144A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.30A>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41254
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu32Gly
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-31360859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360859
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360859
    reference: chr 2
allele count: 8
allele frequency: 6.805151499685262e-5
allele num: 117558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.63G>A
  hgvsp: ENSP00000398723.1:p.Glu22Lys
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.94G>A
  hgvsp: ENSP00000406399.1:p.Glu32Lys
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.94G>A
  hgvsp: ENSP00000288988.6:p.Glu32Lys
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8929G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8929G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.63G>A
  hgvsp: ENSP00000399886.1:p.Glu22Lys
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.94G>A
  hgvsp: ENSP00000314500.5:p.Glu32Lys
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-145G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.94G>A
  hgvsp: ENSP00000348497.3:p.Glu32Lys
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.29G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu32Lys
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/2-31360862-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360862
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360862
    reference: chr 2
allele count: 1
allele frequency: 8.44694474008751e-6
allele num: 118386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8926T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-148T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.91T>G
  hgvsp: ENSP00000288988.6:p.Leu31Val
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.26T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.60T>G
  hgvsp: ENSP00000399886.1:p.Leu21Val
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8926T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.91T>G
  hgvsp: ENSP00000314500.5:p.Leu31Val
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.91T>G
  hgvsp: ENSP00000406399.1:p.Leu31Val
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.91T>G
  hgvsp: ENSP00000348497.3:p.Leu31Val
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.60T>G
  hgvsp: ENSP00000398723.1:p.Leu21Val
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu31Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

2-31360862-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360862
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360862
    reference: chr 2
allele count: 2
allele frequency: 1.689388948017502e-5
allele num: 118386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-148T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.60T>C
  hgvsp: ENST00000424136.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.91T>C
  hgvsp: ENST00000356174.3:c.91T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.91T>C
  hgvsp: ENST00000349752.5:c.91T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.60T>C
  hgvsp: ENST00000455477.1:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.91T>C
  hgvsp: ENST00000324589.5:c.91T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.91T>C
  hgvsp: ENST00000430167.1:c.91T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.26T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8926T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8926T>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4240
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu31Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

2-31360866-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360866
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360866
    reference: chr 2
allele count: 1
allele frequency: 8.400255367763179e-6
allele num: 119044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.87G>C
  hgvsp: ENSP00000406399.1:p.Arg29Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.56G>C
  hgvsp: ENSP00000399886.1:p.Arg19Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.56G>C
  hgvsp: ENSP00000398723.1:p.Arg19Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8922G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.87G>C
  hgvsp: ENSP00000348497.3:p.Arg29Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.87G>C
  hgvsp: ENSP00000288988.6:p.Arg29Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.87G>C
  hgvsp: ENSP00000314500.5:p.Arg29Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.22G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8922G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-152G>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg29Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

2-31360887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360887
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360887
    reference: chr 2
allele count: 1
allele frequency: 8.306061763875276e-6
allele num: 120394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8901G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.35G>A
  hgvsp: ENST00000455477.1:c.35G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000415514
  ensembl transcript: ENST00000420311
  gene symbol: GALNT14
  hgvsc: ENST00000420311.2:c.-173G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8901G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.35G>A
  hgvsp: ENST00000424136.1:c.35G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.66G>A
  hgvsp: ENST00000356174.3:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.66G>A
  hgvsp: ENST00000324589.5:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.66G>A
  hgvsp: ENST00000430167.1:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.66G>A
  hgvsp: ENST00000349752.5:c.66G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000461193
  gene symbol: GALNT14
  hgvsc: ENST00000461193.1:n.1G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu22Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-31360890-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360890
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360890
    reference: chr 2
allele count: 1
allele frequency: 8.299581701082266e-6
allele num: 120488
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.63G>C
  hgvsp: ENST00000356174.3:c.63G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.63G>C
  hgvsp: ENST00000349752.5:c.63G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.32G>C
  hgvsp: ENST00000424136.1:c.32G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.63G>C
  hgvsp: ENST00000430167.1:c.63G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.32G>C
  hgvsp: ENST00000455477.1:c.32G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8898G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8898G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.63G>C
  hgvsp: ENST00000324589.5:c.63G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu21Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

2-31360891-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360891
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360891
    reference: chr 2
allele count: 3
allele frequency: 2.489461280578883e-5
allele num: 120508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8897T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.62T>C
  hgvsp: ENSP00000288988.6:p.Leu21Pro
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.62T>C
  hgvsp: ENSP00000348497.3:p.Leu21Pro
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.62T>C
  hgvsp: ENSP00000314500.5:p.Leu21Pro
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8897T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.31T>C
  hgvsp: ENSP00000399886.1:p.Leu11Pro
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.62T>C
  hgvsp: ENSP00000406399.1:p.Leu21Pro
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.31T>C
  hgvsp: ENSP00000398723.1:p.Leu11Pro
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu21Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-31360894-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360894
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360894
    reference: chr 2
allele count: 1
allele frequency: 8.29462508294625e-6
allele num: 120560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.28T>G
  hgvsp: ENSP00000399886.1:p.Val10Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8894T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8894T>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.59T>G
  hgvsp: ENSP00000406399.1:p.Val20Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.28T>G
  hgvsp: ENSP00000398723.1:p.Val10Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.59T>G
  hgvsp: ENSP00000288988.6:p.Val20Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.59T>G
  hgvsp: ENSP00000314500.5:p.Val20Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.59T>G
  hgvsp: ENSP00000348497.3:p.Val20Gly
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val20Gly
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ

2-31360911-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360911
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360911
    reference: chr 2
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.11G>A
  hgvsp: ENST00000455477.1:c.11G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.42G>A
  hgvsp: ENST00000349752.5:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.42G>A
  hgvsp: ENST00000430167.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.42G>A
  hgvsp: ENST00000356174.3:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8877G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8877G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.11G>A
  hgvsp: ENST00000424136.1:c.11G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.42G>A
  hgvsp: ENST00000324589.5:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly14Gly
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-31360914-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360914
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360914
    reference: chr 2
allele count: 1
allele frequency: 8.286514526259965e-6
allele num: 120678
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.39C>A
  hgvsp: ENSP00000314500.5:p.Phe13Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000398723
  ensembl transcript: ENST00000424136
  gene symbol: GALNT14
  hgvsc: ENST00000424136.1:c.8C>A
  hgvsp: ENSP00000398723.1:p.Phe3Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8874C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.39C>A
  hgvsp: ENSP00000348497.3:p.Phe13Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.39C>A
  hgvsp: ENSP00000288988.6:p.Phe13Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8874C>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000399886
  ensembl transcript: ENST00000455477
  gene symbol: GALNT14
  hgvsc: ENST00000455477.1:c.8C>A
  hgvsp: ENSP00000399886.1:p.Phe3Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.39C>A
  hgvsp: ENSP00000406399.1:p.Phe13Leu
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11825
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe13Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

2-31360928-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360928
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360928
    reference: chr 2
allele count: 1286
allele frequency: 1.066193539828878e-2
allele num: 120616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.25G>C
  hgvsp: ENSP00000288988.6:p.Val9Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.25G>C
  hgvsp: ENSP00000406399.1:p.Val9Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8860G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8860G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.25G>C
  hgvsp: ENSP00000314500.5:p.Val9Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.25G>C
  hgvsp: ENSP00000348497.3:p.Val9Leu
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11684
  bin: 2.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 41017
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 3.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 3.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 118
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 9.75e1
  variant carriers: 1260
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val9Leu
num of homozygotes: 17
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-31360929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360929
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360929
    reference: chr 2
allele count: 1
allele frequency: 8.291461452995706e-6
allele num: 120606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8859G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8859G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.24G>A
  hgvsp: ENST00000430167.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.24G>A
  hgvsp: ENST00000324589.5:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.24G>A
  hgvsp: ENST00000349752.5:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.24G>A
  hgvsp: ENST00000356174.3:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu8Leu
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

2-31360935-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360935
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360935
    reference: chr 2
allele count: 6
allele frequency: 4.976857612103718e-5
allele num: 120558
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.18T>C
  hgvsp: ENST00000356174.3:c.18T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.18T>C
  hgvsp: ENST00000324589.5:c.18T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8853T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.18T>C
  hgvsp: ENST00000349752.5:c.18T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.18T>C
  hgvsp: ENST00000430167.1:c.18T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8853T>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43688
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg6Arg
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

2-31360940-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360940
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360940
    reference: chr 2
allele count: 1
allele frequency: 8.297515723792297e-6
allele num: 120518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.13A>T
  hgvsp: ENSP00000348497.3:p.Thr5Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.13A>T
  hgvsp: ENSP00000406399.1:p.Thr5Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8848A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8848A>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.13A>T
  hgvsp: ENSP00000314500.5:p.Thr5Ser
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.13A>T
  hgvsp: ENSP00000288988.6:p.Thr5Ser
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr5Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/2-31360945-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360945
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360945
    reference: chr 2
allele count: 6
allele frequency: 4.981650919114595e-5
allele num: 120442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8843G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8843G>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.8G>T
  hgvsp: ENSP00000288988.6:p.Arg3Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.8G>T
  hgvsp: ENSP00000406399.1:p.Arg3Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.8G>T
  hgvsp: ENSP00000314500.5:p.Arg3Leu
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.8G>T
  hgvsp: ENSP00000348497.3:p.Arg3Leu
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg3Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-31360947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360947
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360947
    reference: chr 2
allele count: 1
allele frequency: 8.306889734345666e-6
allele num: 120382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8841G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.6G>A
  hgvsp: ENST00000356174.3:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.6G>A
  hgvsp: ENST00000430167.1:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.6G>A
  hgvsp: ENST00000349752.5:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.6G>A
  hgvsp: ENST00000324589.5:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8841G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg2Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

2-31360949-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360949
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360949
    reference: chr 2
allele count: 1
allele frequency: 8.307165761185599e-6
allele num: 120378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8839C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.4C>G
  hgvsp: ENSP00000288988.6:p.Arg2Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8839C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.4C>G
  hgvsp: ENSP00000314500.5:p.Arg2Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.4C>G
  hgvsp: ENSP00000406399.1:p.Arg2Gly
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.4C>G
  hgvsp: ENSP00000348497.3:p.Arg2Gly
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg2Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-31360950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360950
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360950
    reference: chr 2
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.3G>A
  hgvsp: ENSP00000314500.5:p.Met1?
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.3G>A
  hgvsp: ENSP00000348497.3:p.Met1?
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8838G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8838G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.3G>A
  hgvsp: ENSP00000406399.1:p.Met1?
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.3G>A
  hgvsp: ENSP00000288988.6:p.Met1?
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-31360956-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360956
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360956
    reference: chr 2
allele count: 19
allele frequency: 1.58004158004158e-4
allele num: 120250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000348497
  ensembl transcript: ENST00000356174
  gene symbol: GALNT14
  hgvsc: ENST00000356174.3:c.-4G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-4G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-4G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-4G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8832G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8832G>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7137
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

2-31360964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360964
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360964
    reference: chr 2
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-12G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-12G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8824G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8824G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42528
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

2-31360970-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360970
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360970
    reference: chr 2
allele count: 2
allele frequency: 1.669337606837607e-5
allele num: 119808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8818G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-18G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-18G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-18G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8818G>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7077
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

2-31360973-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360973
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360973
    reference: chr 2
allele count: 1
allele frequency: 8.358688020328329e-6
allele num: 119636
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8815G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-21G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-21G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8815G>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-21G>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7027
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41037
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-31360974-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360974
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360974
    reference: chr 2
allele count: 1
allele frequency: 8.358688020328329e-6
allele num: 119636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8814A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8814A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-22A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-22A>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-22A>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

2-31360975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360975
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360975
    reference: chr 2
allele count: 1
allele frequency: 8.358268835358821e-6
allele num: 119642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8813G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-23G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8813G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-23G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38971
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

2-31360985-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360985
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360985
    reference: chr 2
allele count: 1
allele frequency: 8.396587626788473e-6
allele num: 119096
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-33T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8803T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-33T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8803T>C
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-33T>C
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ

2-31360989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360989
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360989
    reference: chr 2
allele count: 3
allele frequency: 2.530492433827623e-5
allele num: 118554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-37G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8799G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8799G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-37G>A
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-37G>A
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 586
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6611
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

2-31360992-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360992
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360992
    reference: chr 2
allele count: 1
allele frequency: 8.445517963616709e-6
allele num: 118406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-40C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-40C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8796C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-40C>T
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8796C>T
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10911
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6571
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-31360993-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31360993
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 31360993
    reference: chr 2
allele count: 1
allele frequency: 8.447801037389967e-6
allele num: 118374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000464038
  gene symbol: GALNT14
  hgvsc: ENST00000464038.1:n.388+8795C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000288988
  ensembl transcript: ENST00000349752
  gene symbol: GALNT14
  hgvsc: ENST00000349752.5:c.-41C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000314500
  ensembl transcript: ENST00000324589
  gene symbol: GALNT14
  hgvsc: ENST00000324589.5:c.-41C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000158089
  ensembl protein: ENSP00000406399
  ensembl transcript: ENST00000430167
  gene symbol: GALNT14
  hgvsc: ENST00000430167.1:c.-41C>G
  variant of: http://identifiers.org/hgnc/22946
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158089
  ensembl transcript: ENST00000485468
  gene symbol: GALNT14
  hgvsc: ENST00000485468.1:n.57+8795C>G
  variant of: http://identifiers.org/hgnc/22946
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G

GenotypeDepth
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 544
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 889
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.318565400843882e-4
allele num: 7584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5216
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

QD
type: SiteQuality
SIO_000300: 1.074e1

MQ
type: SiteQuality
SIO_000300: 5.996e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.002e0

DP
type: SiteQuality
SIO_000300: 2.45824e5

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

GenotypeDepth
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2336
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 543
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.914975105323631e-4
allele num: 5222
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.854368932038835e-3
allele num: 206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.711e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

QD
type: SiteQuality
SIO_000300: 1.494e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 3.521e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.4864e5

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.559e0

GenotypeDepth
all individuals: 528
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 7.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 638
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variant carriers: 0

GenotypeQuality
all individuals: 434
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.912777352716144e-4
allele num: 5228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.125e1

FS
type: SiteQuality
SIO_000300: 1.582e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.178e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.89e-1

DP
type: SiteQuality
SIO_000300: 2.49714e5

GenotypeDepth
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1281
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variant carriers: 1

GenotypeDepth
all individuals: 28
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variant carriers: 0

GenotypeDepth
all individuals: 65
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1054
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variant carriers: 1

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 431
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 633
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.234413965087282e-4
allele num: 1604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5326
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

QD
type: SiteQuality
SIO_000300: 1.378e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

DP
type: SiteQuality
SIO_000300: 2.54733e5

GenotypeDepth
all individuals: 508
bin: 1.25e1
variant carriers: 0

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 2.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 345
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
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variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.310272536687631e-4
allele num: 7632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.51483e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.692e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.223e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.032e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 9.17e0

GenotypeDepth
all individuals: 115
bin: 4.75e1
variant carriers: 3

GenotypeDepth
all individuals: 13
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2284
bin: 2.75e1
variant carriers: 9

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 5
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3200
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 481
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 1

GenotypeQuality
all individuals: 239
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variant carriers: 1

GenotypeQuality
all individuals: 627
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 558
bin: 9.75e1
variant carriers: 51

GenotypeQuality
all individuals: 480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 49
allele frequency: 5.432372505543237e-2
allele num: 902
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 7.671653241273494e-4
allele num: 5214
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 3.448275862068965e-3
allele num: 290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

BaseQRankSum
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SIO_000300: -5.85e-1

FS
type: SiteQuality
SIO_000300: 5.87e-1

DP
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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SIO_000300: 1.268e1

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

VQSLOD
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SIO_000300: 3.83e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 635
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.30718954248366e-4
allele num: 7650
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.23e-1

MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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SIO_000300: 1.03e0

DP
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SIO_000300: 2.28767e5

BaseQRankSum
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SIO_000300: -4.168e0

QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 499
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GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5246
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.083333333333333e-3
allele num: 480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1242
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.238e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

VQSLOD
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SIO_000300: -2.037e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.438e1

DP
type: SiteQuality
SIO_000300: 2.32387e5

ClippingRankSum
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SIO_000300: -2.115e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 503
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.083333333333333e-3
allele num: 480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.289e0

DP
type: SiteQuality
SIO_000300: 2.32879e5

InbreedingCoeff
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SIO_000300: -2.48e-2

QD
type: SiteQuality
SIO_000300: 8.050000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -9.141e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 7

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 6

GenotypeDepth
all individuals: 5
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.84931506849315e-3
allele num: 292
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304461257500652e-4
allele num: 7666
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1350
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African
type: Population
allele count: 89
allele frequency: 9.910913140311804e-2
allele num: 898
num of homozygotes: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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FS
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ClippingRankSum
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QD
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DP
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 6.729475100942127e-4
allele num: 1486
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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FS
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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allele frequency: 2.083333333333333e-3
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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SIO_000300: 5.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

DP
type: SiteQuality
SIO_000300: 2.37043e5

FS
type: SiteQuality
SIO_000300: 4.995e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1580
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304801670146138e-4
allele num: 7664
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

FS
type: SiteQuality
SIO_000300: 2.301e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.656e0

QD
type: SiteQuality
SIO_000300: 1.058e1

DP
type: SiteQuality
SIO_000300: 2.36963e5

GenotypeDepth
all individuals: 12
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variant carriers: 1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 100

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 474
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GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 3.472222222222222e-3
allele num: 288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 57
allele frequency: 7.437369519832986e-3
allele num: 7664
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 7
allele frequency: 4.435994930291508e-3
allele num: 1578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 6.789890607317993e-3
allele num: 5302
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.092050209205021e-3
allele num: 478
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.58e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 5.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

DP
type: SiteQuality
SIO_000300: 2.42854e5

GenotypeDepth
all individuals: 2437
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variant carriers: 0

GenotypeDepth
all individuals: 287
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variant carriers: 0

GenotypeDepth
all individuals: 5
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variant carriers: 1

GenotypeDepth
all individuals: 15
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 607
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 1200
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GenotypeQuality
all individuals: 4201
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.901140684410646e-4
allele num: 5260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 2.34822e5

MQRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.73e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.286e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.46e-1

GenotypeDepth
all individuals: 2528
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variant carriers: 0

GenotypeDepth
all individuals: 111
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variant carriers: 0

GenotypeDepth
all individuals: 107
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
all individuals: 15
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 4
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 475
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GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 239
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GenotypeQuality
all individuals: 467
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.21654501216545e-3
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.901960784313725e-3
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.07e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

FS
type: SiteQuality
SIO_000300: 1.133e0

VQSLOD
type: SiteQuality
SIO_000300: -3.493e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

DP
type: SiteQuality
SIO_000300: 2.29389e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeDepth
all individuals: 2378
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variant carriers: 0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeDepth
all individuals: 0
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variant carriers: 0

GenotypeDepth
all individuals: 713
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GenotypeDepth
all individuals: 15
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GenotypeDepth
all individuals: 106
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1087
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.2531328320802e-3
allele num: 798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.24003e5

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.258e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1218
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.333333333333333e-3
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4622
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.572e1

DP
type: SiteQuality
SIO_000300: 2.039e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

QD
type: SiteQuality
SIO_000300: 1.049e1

VQSLOD
type: SiteQuality
SIO_000300: -9.484e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 588
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GenotypeQuality
all individuals: 486
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.317870321560359e-4
allele num: 7588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 2.06648e5

QD
type: SiteQuality
SIO_000300: 1.352e1

FS
type: SiteQuality
SIO_000300: 1.374e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.592e0

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.132e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.05e-1

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 1.058201058201058e-2
allele num: 378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.313715186547556e-4
allele num: 7612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4676
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.048e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 2.09807e5

QD
type: SiteQuality
SIO_000300: 1.25e1

FS
type: SiteQuality
SIO_000300: 1.293e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: -3.88e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.811e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085070892410342e-4
allele num: 4796
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-1

FS
type: SiteQuality
SIO_000300: 2.099e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.029e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 2.13088e5

VQSLOD
type: SiteQuality
SIO_000300: -5.416e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 412
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 8.35421888053467e-4
allele num: 4788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

DP
type: SiteQuality
SIO_000300: 2.1291e5

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

FS
type: SiteQuality
SIO_000300: 1.321e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

GenotypeQuality
all individuals: 3920
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 474
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.374453193350831e-4
allele num: 2286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 6.55086e5

FS
type: SiteQuality
SIO_000300: 3.112e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

QD
type: SiteQuality
SIO_000300: 1.193e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.706449221645664e-5
allele num: 26980
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.368e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.37e0

DP
type: SiteQuality
SIO_000300: 6.66842e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.855827134254339e-5
allele num: 11292
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2508
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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VQSLOD
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ReadPosRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
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Latino
type: Population
allele count: 1
allele frequency: 2.212389380530973e-4
allele num: 4520
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 19
allele frequency: 5.915317559153176e-4
allele num: 32120
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 2.068e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5320
num of homozygotes: 0

Latino
type: Population
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allele frequency: 2.196836555360281e-4
allele num: 4552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2664
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 6.197322756569162e-4
allele num: 32272
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.168e-1

DP
type: SiteQuality
SIO_000300: 8.03638e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-2

FS
type: SiteQuality
SIO_000300: 4.422e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.202e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.821e1

GenotypeQuality
all individuals: 25037
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3232
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.177700348432056e-4
allele num: 4592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2670
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.591e0

BaseQRankSum
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SIO_000300: -2.287e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

DP
type: SiteQuality
SIO_000300: 8.12612e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

QD
type: SiteQuality
SIO_000300: 5.8e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 2.018570851836899e-4
allele num: 4954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3462
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.157e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.456e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 3.033e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

DP
type: SiteQuality
SIO_000300: 8.419e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12196
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.904036557501904e-4
allele num: 5252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.66712e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.159e1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.654e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.199409642505739e-5
allele num: 12196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.854044180603916e-5
allele num: 35038
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

QD
type: SiteQuality
SIO_000300: 1.159e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.654e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

DP
type: SiteQuality
SIO_000300: 8.66712e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12998
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.429425197998154e-5
allele num: 41162
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6774
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.80092e5

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.072e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45494
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.261034047919294e-4
allele num: 7930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.061691e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.256e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4312
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.163191139569092e-5
allele num: 46228
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -5.29e-1

FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
all individuals: 1196
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 551
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GenotypeQuality
all individuals: 1290
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.258399693395222e-5
allele num: 46966
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ReadPosRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 3.9e-3

VQSLOD
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ClippingRankSum
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SIO_000300: -1.673e0

FS
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DP
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SIO_000300: 1.089714e6

BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 7.24952878062926e-5
allele num: 13794
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 46966
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 7208
num of homozygotes: 0

QD
type: SiteQuality
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DP
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FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.673e0

MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.488095238095238e-4
allele num: 6720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54106
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5166
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -2.5e-3

QD
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VQSLOD
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FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -3.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: 1.14e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.747946163258172e-5
allele num: 57210
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.824e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
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SIO_000300: 6.5e-1

ReadPosRankSum
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SIO_000300: -1.432e0

FS
type: SiteQuality
SIO_000300: 2.949e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.16e-1

DP
type: SiteQuality
SIO_000300: 1.27079e6

VQSLOD
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SIO_000300: -1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7516
num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 5.289139633286319e-4
allele num: 5672
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10590
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.866e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

InbreedingCoeff
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SIO_000300: -1.4e-3

BaseQRankSum
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SIO_000300: -2.413e0

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

ReadPosRankSum
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VQSLOD
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DP
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SIO_000300: 1.302482e6

FS
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.655e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.596424010217114e-5
allele num: 62640
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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East Asian
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Latino
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.560305819940709e-5
allele num: 64090
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
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DP
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

European (Non-Finnish)
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allele num: 64294
num of homozygotes: 0

South Asian
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East Asian
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African
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Latino
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Other
type: Population
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European (Finnish)
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allele frequency: 1.102362204724409e-3
allele num: 6350
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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MQ
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64820
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10000
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.119202056051891e-5
allele num: 16342
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -4.44e-1

MQRankSum
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FS
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SIO_000300: 4.069e0

BaseQRankSum
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SIO_000300: 4.15e0

InbreedingCoeff
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DP
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SIO_000300: 1.423876e6

ReadPosRankSum
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SIO_000300: 5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 1.378e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64820
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10000
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South Asian
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allele count: 2
allele frequency: 1.223840411210378e-4
allele num: 16342
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 4.15e0

MQRankSum
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SIO_000300: 5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.423876e6

ReadPosRankSum
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SIO_000300: 5.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65154
num of homozygotes: 0

South Asian
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allele frequency: 6.090875867949811e-5
allele num: 16418
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8586
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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SIO_000300: -9.370000000000001e-1

FS
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
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South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.156e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.947e0

VQSLOD
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DP
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QD
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ClippingRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.754194303550527e-5
allele num: 10252
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66094
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1034e1

MQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.537754114230397e-5
allele num: 66112
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

QD
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
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allele num: 890
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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Other
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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QD
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BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.323e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

FS
type: SiteQuality
SIO_000300: 3.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.98e-1

DP
type: SiteQuality
SIO_000300: 1.45223e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

GenotypeQuality
all individuals: 43367
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1507
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7014
bin: 6.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 294
allele frequency: 4.453196001211754e-2
allele num: 6602
num of homozygotes: 6

South Asian
type: Population
allele count: 28
allele frequency: 1.696558410082404e-3
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 8.948545861297539e-3
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 58
allele frequency: 5.023384721981639e-3
allele num: 11546
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 742
allele frequency: 1.121354087955267e-2
allele num: 66170
num of homozygotes: 9

East Asian
type: Population
allele count: 142
allele frequency: 1.645422943221321e-2
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.363193768257059e-3
allele num: 10270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

QD
type: SiteQuality
SIO_000300: 1.07e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 3.278e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.84e-1

DP
type: SiteQuality
SIO_000300: 1.500446e6

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.465027e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

FS
type: SiteQuality
SIO_000300: 6.531e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.398e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.071e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 9.82e0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 7195
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.560864962951762e-5
allele num: 66130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

DP
type: SiteQuality
SIO_000300: 1.464178e6

QD
type: SiteQuality
SIO_000300: 1.253e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 2.658e0

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 575
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7187
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51267622678042e-5
allele num: 66108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.864e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e0

VQSLOD
type: SiteQuality
SIO_000300: -3.376e0

DP
type: SiteQuality
SIO_000300: 1.462661e6

GenotypeQuality
all individuals: 7176
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43448
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.569793496033428e-5
allele num: 66052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 2.643e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.79e-1

QD
type: SiteQuality
SIO_000300: 1.361e1

DP
type: SiteQuality
SIO_000300: 1.4615e6

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7168
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66012
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.146e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

DP
type: SiteQuality
SIO_000300: 1.45991e6

VQSLOD
type: SiteQuality
SIO_000300: 9.25e-1

FS
type: SiteQuality
SIO_000300: 1.541e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.408e0

MQRankSum
type: SiteQuality
SIO_000300: 3.19e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeQuality
all individuals: 7158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43335
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66012
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.17e0

DP
type: SiteQuality
SIO_000300: 1.460402e6

QD
type: SiteQuality
SIO_000300: 1.46e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.518e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.44e-1

GenotypeQuality
all individuals: 43352
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7166
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515335192144502e-5
allele num: 65992
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.459454e6

VQSLOD
type: SiteQuality
SIO_000300: -1.591e0

MQ
type: SiteQuality
SIO_000300: 5.732e1

FS
type: SiteQuality
SIO_000300: 2.137e0

QD
type: SiteQuality
SIO_000300: 1.187e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.528e0

GenotypeQuality
all individuals: 43012
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65906
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 1.647875108412836e-3
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

DP
type: SiteQuality
SIO_000300: 1.457044e6

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7107
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65772
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: -1.129e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

DP
type: SiteQuality
SIO_000300: 1.451871e6

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

GenotypeQuality
all individuals: 1098
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 372
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41727
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.325581395348837e-4
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 3.752e0

QD
type: SiteQuality
SIO_000300: 1.32e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 1.443478e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

GenotypeQuality
all individuals: 1498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.799e0

DP
type: SiteQuality
SIO_000300: 1.439125e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.105e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

GenotypeQuality
all individuals: 593
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.8833761612967e-5
allele num: 10118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.156e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

MQRankSum
type: SiteQuality
SIO_000300: -1.207e0

FS
type: SiteQuality
SIO_000300: 7.087e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.463e1

DP
type: SiteQuality
SIO_000300: 1.438912e6

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.43899e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.254e0

MQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

QD
type: SiteQuality
SIO_000300: 1.023e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.098e0

VQSLOD
type: SiteQuality
SIO_000300: 5.16e-1

GenotypeQuality
all individuals: 229
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535956747457992e-5
allele num: 65106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 8.029999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -7.074e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.419731e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.089184764140744e-5
allele num: 64742
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.742787200559538e-5
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

FS
type: SiteQuality
SIO_000300: 3.029e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 2.439e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.335e0

VQSLOD
type: SiteQuality
SIO_000300: -2.261e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 1.406892e6

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37209
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.408781e6

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

FS
type: SiteQuality
SIO_000300: 6.303e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

QD
type: SiteQuality
SIO_000300: 1.185e1

GenotypeQuality
all individuals: 571
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36952
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2277
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547364837681428e-5
allele num: 64626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0