3-195509710-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509710
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509710
    reference: chr 3
allele count: 1
allele frequency: 4.776917932549919e-5
allele num: 20934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8741C>A
  hgvsp: ENSP00000420243.1:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8741C>A
  hgvsp: ENSP00000419798.1:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4384C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8741C>A
  hgvsp: ENSP00000417657.1:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8741C>A
  hgvsp: ENSP00000417498.3:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8741C>A
  hgvsp: ENSP00000417722.1:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8741C>A
  hgvsp: ENSP00000418306.1:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8741C>A
  hgvsp: ENSP00000420439.1:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8741C>A
  hgvsp: ENSP00000417757.1:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8741C>A
  hgvsp: ENSP00000419989.1:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8741C>A
  hgvsp: ENSP00000417397.1:p.Pro2914His
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8534C>A
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro2914His
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-195509711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509711
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509711
    reference: chr 3
allele count: 2
allele frequency: 9.532888465204957e-5
allele num: 20980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8740C>T
  hgvsp: ENSP00000420243.1:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8740C>T
  hgvsp: ENSP00000417722.1:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8740C>T
  hgvsp: ENSP00000417657.1:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8740C>T
  hgvsp: ENSP00000418306.1:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8740C>T
  hgvsp: ENSP00000419989.1:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8740C>T
  hgvsp: ENSP00000417498.3:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8740C>T
  hgvsp: ENSP00000417397.1:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8740C>T
  hgvsp: ENSP00000420439.1:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8740C>T
  hgvsp: ENSP00000417757.1:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8740C>T
  hgvsp: ENSP00000419798.1:p.Pro2914Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8535C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4385C>T
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Pro2914Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

3-195509714-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509714
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509714
    reference: chr 3
allele count: 3
allele frequency: 1.430069596720374e-4
allele num: 20978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8737C>G
  hgvsp: ENSP00000417657.1:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8737C>G
  hgvsp: ENSP00000417722.1:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4388C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8538C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8737C>G
  hgvsp: ENSP00000420243.1:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8737C>G
  hgvsp: ENSP00000417498.3:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8737C>G
  hgvsp: ENSP00000419989.1:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8737C>G
  hgvsp: ENSP00000418306.1:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8737C>G
  hgvsp: ENSP00000420439.1:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8737C>G
  hgvsp: ENSP00000417757.1:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8737C>G
  hgvsp: ENSP00000417397.1:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8737C>G
  hgvsp: ENSP00000419798.1:p.Leu2913Val
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20134
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu2913Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

3-195509715-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509715
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509715
    reference: chr 3
allele count: 14
allele frequency: 6.680664248902462e-4
allele num: 20956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8736T>A
  hgvsp: ENST00000477086.1:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8736T>A
  hgvsp: ENST00000463781.3:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8736T>A
  hgvsp: ENST00000470451.1:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8736T>A
  hgvsp: ENST00000480843.1:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8736T>A
  hgvsp: ENST00000462323.1:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8736T>A
  hgvsp: ENST00000466475.1:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8736T>A
  hgvsp: ENST00000479406.1:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8736T>A
  hgvsp: ENST00000478156.1:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8736T>A
  hgvsp: ENST00000477756.1:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8736T>A
  hgvsp: ENST00000475231.1:c.8736T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8539T>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4389T>A
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro2912Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

3-195509716-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509716
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509716
    reference: chr 3
allele count: 2
allele frequency: 9.53197979220284e-5
allele num: 20982
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8735C>G
  hgvsp: ENSP00000417657.1:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8540C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8735C>G
  hgvsp: ENSP00000417397.1:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8735C>G
  hgvsp: ENSP00000418306.1:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8735C>G
  hgvsp: ENSP00000420243.1:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8735C>G
  hgvsp: ENSP00000419989.1:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8735C>G
  hgvsp: ENSP00000420439.1:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8735C>G
  hgvsp: ENSP00000419798.1:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8735C>G
  hgvsp: ENSP00000417498.3:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4390C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8735C>G
  hgvsp: ENSP00000417722.1:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8735C>G
  hgvsp: ENSP00000417757.1:p.Pro2912Arg
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20403
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro2912Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

3-195509717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509717
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509717
    reference: chr 3
allele count: 1
allele frequency: 5.912961210974456e-5
allele num: 16912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8734C>T
  hgvsp: ENSP00000419989.1:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8734C>T
  hgvsp: ENSP00000417757.1:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8734C>T
  hgvsp: ENSP00000417397.1:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8734C>T
  hgvsp: ENSP00000417657.1:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8541C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4391C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8734C>T
  hgvsp: ENSP00000420243.1:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8734C>T
  hgvsp: ENSP00000419798.1:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8734C>T
  hgvsp: ENSP00000418306.1:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8734C>T
  hgvsp: ENSP00000417722.1:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8734C>T
  hgvsp: ENSP00000417498.3:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8734C>T
  hgvsp: ENSP00000420439.1:p.Pro2912Ser
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro2912Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-195509717-G-GCGTGGTGTCACCTGTGGATACTGAGGAAAAGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509717
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509813
    reference: chr 3
allele count: 1
allele frequency: 5.912961210974456e-5
allele num: 16912
alternate allele: GCGTGGTGTCACCTGTGGATACTGAGGAAAAGCTGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

3-195509717-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509717
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509717
    reference: chr 3
allele count: 6
allele frequency: 3.547776726584674e-4
allele num: 16912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8734C>A
  hgvsp: ENSP00000417722.1:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8734C>A
  hgvsp: ENSP00000417757.1:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8734C>A
  hgvsp: ENSP00000420243.1:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8734C>A
  hgvsp: ENSP00000419989.1:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8734C>A
  hgvsp: ENSP00000417498.3:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8734C>A
  hgvsp: ENSP00000419798.1:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8734C>A
  hgvsp: ENSP00000417657.1:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8734C>A
  hgvsp: ENSP00000420439.1:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8734C>A
  hgvsp: ENSP00000417397.1:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8541C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4391C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8734C>A
  hgvsp: ENSP00000418306.1:p.Pro2912Thr
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19804
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7062
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro2912Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

3-195509718-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509718
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509718
    reference: chr 3
allele count: 1
allele frequency: 4.828118964851294e-5
allele num: 20712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8733G>C
  hgvsp: ENST00000466475.1:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8542G>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8733G>C
  hgvsp: ENST00000470451.1:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8733G>C
  hgvsp: ENST00000479406.1:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8733G>C
  hgvsp: ENST00000475231.1:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8733G>C
  hgvsp: ENST00000462323.1:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4392G>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8733G>C
  hgvsp: ENST00000480843.1:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8733G>C
  hgvsp: ENST00000477756.1:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8733G>C
  hgvsp: ENST00000463781.3:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8733G>C
  hgvsp: ENST00000478156.1:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8733G>C
  hgvsp: ENST00000477086.1:c.8733G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6932
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2911Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

3-195509719-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509719
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509719
    reference: chr 3
allele count: 2
allele frequency: 9.47867298578199e-5
allele num: 21100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8732C>T
  hgvsp: ENSP00000417757.1:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8543C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8732C>T
  hgvsp: ENSP00000418306.1:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8732C>T
  hgvsp: ENSP00000420243.1:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8732C>T
  hgvsp: ENSP00000420439.1:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4393C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8732C>T
  hgvsp: ENSP00000417657.1:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8732C>T
  hgvsp: ENSP00000417722.1:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8732C>T
  hgvsp: ENSP00000417498.3:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8732C>T
  hgvsp: ENSP00000419798.1:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8732C>T
  hgvsp: ENSP00000419989.1:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8732C>T
  hgvsp: ENSP00000417397.1:p.Thr2911Met
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2911Met
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-195509719-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509719
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509719
    reference: chr 3
allele count: 2
allele frequency: 9.47867298578199e-5
allele num: 21100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8732C>A
  hgvsp: ENSP00000420243.1:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8732C>A
  hgvsp: ENSP00000420439.1:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8732C>A
  hgvsp: ENSP00000417657.1:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8732C>A
  hgvsp: ENSP00000417397.1:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8732C>A
  hgvsp: ENSP00000417722.1:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8732C>A
  hgvsp: ENSP00000417498.3:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8732C>A
  hgvsp: ENSP00000419798.1:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8543C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4393C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8732C>A
  hgvsp: ENSP00000419989.1:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8732C>A
  hgvsp: ENSP00000417757.1:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8732C>A
  hgvsp: ENSP00000418306.1:p.Thr2911Lys
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2911Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-195509722-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509722
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509722
    reference: chr 3
allele count: 1
allele frequency: 4.73305566073457e-5
allele num: 21128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8729C>A
  hgvsp: ENSP00000417757.1:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8729C>A
  hgvsp: ENSP00000419989.1:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8729C>A
  hgvsp: ENSP00000417657.1:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8729C>A
  hgvsp: ENSP00000417397.1:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8729C>A
  hgvsp: ENSP00000420243.1:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8729C>A
  hgvsp: ENSP00000417498.3:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4396C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8729C>A
  hgvsp: ENSP00000419798.1:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8729C>A
  hgvsp: ENSP00000420439.1:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8729C>A
  hgvsp: ENSP00000417722.1:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8546C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8729C>A
  hgvsp: ENSP00000418306.1:p.Thr2910Asn
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21516
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2910Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

3-195509728-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509728
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509728
    reference: chr 3
allele count: 1
allele frequency: 4.714312653215161e-5
allele num: 21212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8723G>C
  hgvsp: ENSP00000417657.1:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8723G>C
  hgvsp: ENSP00000417397.1:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8723G>C
  hgvsp: ENSP00000420243.1:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8723G>C
  hgvsp: ENSP00000420439.1:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8552G>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4402G>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8723G>C
  hgvsp: ENSP00000419798.1:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8723G>C
  hgvsp: ENSP00000418306.1:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8723G>C
  hgvsp: ENSP00000417722.1:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8723G>C
  hgvsp: ENSP00000417757.1:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8723G>C
  hgvsp: ENSP00000419989.1:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8723G>C
  hgvsp: ENSP00000417498.3:p.Gly2908Ala
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6934
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly2908Ala
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

3-195509729-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509729
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509729
    reference: chr 3
allele count: 5
allele frequency: 2.355157795572303e-4
allele num: 21230
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8722G>C
  hgvsp: ENSP00000420439.1:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8722G>C
  hgvsp: ENSP00000417397.1:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8722G>C
  hgvsp: ENSP00000417657.1:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8722G>C
  hgvsp: ENSP00000420243.1:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8722G>C
  hgvsp: ENSP00000417757.1:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8553G>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8722G>C
  hgvsp: ENSP00000419989.1:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8722G>C
  hgvsp: ENSP00000418306.1:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8722G>C
  hgvsp: ENSP00000417498.3:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4403G>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8722G>C
  hgvsp: ENSP00000419798.1:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8722G>C
  hgvsp: ENSP00000417722.1:p.Gly2908Arg
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6934
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly2908Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-195509737-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509737
    reference: chr 3
allele count: 2
allele frequency: 9.46073793755913e-5
allele num: 21140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8714T>C
  hgvsp: ENSP00000418306.1:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8714T>C
  hgvsp: ENSP00000417498.3:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8714T>C
  hgvsp: ENSP00000417397.1:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8714T>C
  hgvsp: ENSP00000420439.1:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8714T>C
  hgvsp: ENSP00000419798.1:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8714T>C
  hgvsp: ENSP00000417657.1:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8714T>C
  hgvsp: ENSP00000417722.1:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4411T>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8714T>C
  hgvsp: ENSP00000420243.1:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8714T>C
  hgvsp: ENSP00000419989.1:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8561T>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8714T>C
  hgvsp: ENSP00000417757.1:p.Val2905Ala
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val2905Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

3-195509737-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509737
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509737
    reference: chr 3
allele count: 1
allele frequency: 4.730368968779565e-5
allele num: 21140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8714T>A
  hgvsp: ENSP00000417757.1:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8714T>A
  hgvsp: ENSP00000420243.1:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8714T>A
  hgvsp: ENSP00000417397.1:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8714T>A
  hgvsp: ENSP00000419989.1:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8714T>A
  hgvsp: ENSP00000419798.1:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8714T>A
  hgvsp: ENSP00000417657.1:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4411T>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8714T>A
  hgvsp: ENSP00000420439.1:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8714T>A
  hgvsp: ENSP00000418306.1:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8714T>A
  hgvsp: ENSP00000417498.3:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8561T>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8714T>A
  hgvsp: ENSP00000417722.1:p.Val2905Glu
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val2905Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-195509743-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509743
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509743
    reference: chr 3
allele count: 102
allele frequency: 4.761904761904762e-3
allele num: 21420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8708C>A
  hgvsp: ENSP00000417397.1:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8708C>A
  hgvsp: ENSP00000420439.1:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8708C>A
  hgvsp: ENSP00000417722.1:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8708C>A
  hgvsp: ENSP00000417498.3:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8708C>A
  hgvsp: ENSP00000420243.1:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4417C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8708C>A
  hgvsp: ENSP00000417757.1:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8708C>A
  hgvsp: ENSP00000417657.1:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8708C>A
  hgvsp: ENSP00000419989.1:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8708C>A
  hgvsp: ENSP00000418306.1:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8708C>A
  hgvsp: ENSP00000419798.1:p.Ser2903Tyr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8567C>A
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22299
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ser2903Tyr
num of homozygotes: 2
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

3-195509747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509747
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509747
    reference: chr 3
allele count: 5
allele frequency: 2.349182484495396e-4
allele num: 21284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4421C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8704C>T
  hgvsp: ENSP00000417397.1:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8704C>T
  hgvsp: ENSP00000418306.1:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8704C>T
  hgvsp: ENSP00000417498.3:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8704C>T
  hgvsp: ENSP00000417657.1:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8704C>T
  hgvsp: ENSP00000419989.1:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8704C>T
  hgvsp: ENSP00000417722.1:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8704C>T
  hgvsp: ENSP00000417757.1:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8704C>T
  hgvsp: ENSP00000419798.1:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8704C>T
  hgvsp: ENSP00000420439.1:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8571C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8704C>T
  hgvsp: ENSP00000420243.1:p.Leu2902Phe
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6941
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu2902Phe
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

3-195509748-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509748
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509748
    reference: chr 3
allele count: 2
allele frequency: 9.202171712524156e-5
allele num: 21734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8703C>G
  hgvsp: ENSP00000419989.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8703C>G
  hgvsp: ENSP00000420439.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8703C>G
  hgvsp: ENSP00000419798.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8703C>G
  hgvsp: ENSP00000417657.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8703C>G
  hgvsp: ENSP00000420243.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4422C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8703C>G
  hgvsp: ENSP00000418306.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8703C>G
  hgvsp: ENSP00000417498.3:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8572C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8703C>G
  hgvsp: ENSP00000417397.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8703C>G
  hgvsp: ENSP00000417722.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8703C>G
  hgvsp: ENSP00000417757.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ser2901Arg
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

3-195509748-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509748
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509748
    reference: chr 3
allele count: 1
allele frequency: 4.601085856262078e-5
allele num: 21734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8703C>A
  hgvsp: ENSP00000419798.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8703C>A
  hgvsp: ENSP00000419989.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8703C>A
  hgvsp: ENSP00000418306.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4422C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8703C>A
  hgvsp: ENSP00000417757.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8703C>A
  hgvsp: ENSP00000417657.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8703C>A
  hgvsp: ENSP00000420439.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8703C>A
  hgvsp: ENSP00000417722.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8703C>A
  hgvsp: ENSP00000417498.3:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8703C>A
  hgvsp: ENSP00000417397.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8703C>A
  hgvsp: ENSP00000420243.1:p.Ser2901Arg
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8572C>A
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser2901Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-195509750-TGGTGAGAGGAAGAGGGGTAGCGTGACCTGTGGACACTGAGGAAGCGTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509750
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509702
    reference: chr 3
allele count: 1
allele frequency: 4.597278411180581e-5
allele num: 21752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Asp2885_Thr2900del
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 22607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp2885_Thr2900del
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: TGGTGAGAGGAAGAGGGGTAGCGTGACCTGTGGACACTGAGGAAGCGTC
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

3-195509751-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509751
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509751
    reference: chr 3
allele count: 2
allele frequency: 9.153318077803204e-5
allele num: 21850
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8575C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8700C>G
  hgvsp: ENST00000480843.1:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8700C>G
  hgvsp: ENST00000470451.1:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4425C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8700C>G
  hgvsp: ENST00000462323.1:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8700C>G
  hgvsp: ENST00000475231.1:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8700C>G
  hgvsp: ENST00000477756.1:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8700C>G
  hgvsp: ENST00000479406.1:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8700C>G
  hgvsp: ENST00000478156.1:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8700C>G
  hgvsp: ENST00000463781.3:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8700C>G
  hgvsp: ENST00000477086.1:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8700C>G
  hgvsp: ENST00000466475.1:c.8700C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2900Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

3-195509752-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509752
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509752
    reference: chr 3
allele count: 2
allele frequency: 9.125752874612155e-5
allele num: 21916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4426C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8699C>A
  hgvsp: ENSP00000419798.1:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8699C>A
  hgvsp: ENSP00000420439.1:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8699C>A
  hgvsp: ENSP00000417498.3:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8699C>A
  hgvsp: ENSP00000417397.1:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8576C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8699C>A
  hgvsp: ENSP00000420243.1:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8699C>A
  hgvsp: ENSP00000417757.1:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8699C>A
  hgvsp: ENSP00000419989.1:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8699C>A
  hgvsp: ENSP00000417657.1:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8699C>A
  hgvsp: ENSP00000418306.1:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8699C>A
  hgvsp: ENSP00000417722.1:p.Thr2900Asn
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22681
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2900Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

3-195509756-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509756
    reference: chr 3
allele count: 2
allele frequency: 9.549274255156608e-5
allele num: 20944
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8695C>G
  hgvsp: ENSP00000420439.1:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8695C>G
  hgvsp: ENSP00000420243.1:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4430C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8580C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8695C>G
  hgvsp: ENSP00000417722.1:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8695C>G
  hgvsp: ENSP00000417657.1:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8695C>G
  hgvsp: ENSP00000418306.1:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8695C>G
  hgvsp: ENSP00000419989.1:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8695C>G
  hgvsp: ENSP00000417757.1:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8695C>G
  hgvsp: ENSP00000417498.3:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8695C>G
  hgvsp: ENSP00000417397.1:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8695C>G
  hgvsp: ENSP00000419798.1:p.Leu2899Val
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu2899Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-195509756-G-GAGGAAGAGGGGTGGCGTGACCTGTGAATACTGAGGAAGTGTCGGTGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509804
    reference: chr 3
allele count: 2
allele frequency: 9.549274255156608e-5
allele num: 20944
alternate allele: GAGGAAGAGGGGTGGCGTGACCTGTGAATACTGAGGAAGTGTCGGTGAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-195509756-G-GAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509804
    reference: chr 3
allele count: 1939
allele frequency: 9.258021390374331e-2
allele num: 20944
alternate allele: GAGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGAC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 9.75e1
  variant carriers: 1688
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
num of homozygotes: 27
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

3-195509756-G-GAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509804
    reference: chr 3
allele count: 1
allele frequency: 4.774637127578304e-5
allele num: 20944
alternate allele: GAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGTGTCGGTGAC
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

3-195509756-GAGGAAGAGGGGTAGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509756
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509708
    reference: chr 3
allele count: 3
allele frequency: 1.432391138273491e-4
allele num: 20944
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val2883_Pro2898del
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: GAGGAAGAGGGGTAGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGAC
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-195509757-A-AGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509757
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509805
    reference: chr 3
allele count: 2
allele frequency: 9.255831173639393e-5
allele num: 21608
alternate allele: AGGAAGAGGGGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS

3-195509765-GGGTAGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509765
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509669
    reference: chr 3
allele count: 14
allele frequency: 6.214488636363636e-4
allele num: 22528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Ser2864_Thr2895del
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24123
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6938
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser2864_Thr2895del
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: GGGTAGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGA
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

3-195509817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509817
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509817
    reference: chr 3
allele count: 288
allele frequency: 1.653082309723338e-2
allele num: 17422
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8634C>T
  hgvsp: ENST00000478156.1:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8641C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8634C>T
  hgvsp: ENST00000470451.1:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8634C>T
  hgvsp: ENST00000480843.1:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8634C>T
  hgvsp: ENST00000479406.1:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8634C>T
  hgvsp: ENST00000475231.1:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8634C>T
  hgvsp: ENST00000477086.1:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8634C>T
  hgvsp: ENST00000463781.3:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8634C>T
  hgvsp: ENST00000477756.1:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8634C>T
  hgvsp: ENST00000462323.1:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4491C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8634C>T
  hgvsp: ENST00000466475.1:c.8634C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 9.75e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 20714
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala2878Ala
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

3-195509765-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509765
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509765
    reference: chr 3
allele count: 1
allele frequency: 4.438920454545455e-5
allele num: 22528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8686C>A
  hgvsp: ENSP00000419798.1:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8686C>A
  hgvsp: ENSP00000417498.3:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8686C>A
  hgvsp: ENSP00000417722.1:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8686C>A
  hgvsp: ENSP00000418306.1:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8686C>A
  hgvsp: ENSP00000420439.1:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8589C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8686C>A
  hgvsp: ENSP00000417397.1:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8686C>A
  hgvsp: ENSP00000417657.1:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8686C>A
  hgvsp: ENSP00000419989.1:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8686C>A
  hgvsp: ENSP00000420243.1:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4439C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8686C>A
  hgvsp: ENSP00000417757.1:p.Pro2896Thr
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro2896Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

3-195509768-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509768
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509768
    reference: chr 3
allele count: 1
allele frequency: 4.418132013784572e-5
allele num: 22634
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8683A>G
  hgvsp: ENSP00000417498.3:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8683A>G
  hgvsp: ENSP00000417657.1:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4442A>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8683A>G
  hgvsp: ENSP00000417397.1:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8592A>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8683A>G
  hgvsp: ENSP00000420439.1:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8683A>G
  hgvsp: ENSP00000419989.1:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8683A>G
  hgvsp: ENSP00000417722.1:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8683A>G
  hgvsp: ENSP00000418306.1:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8683A>G
  hgvsp: ENSP00000417757.1:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8683A>G
  hgvsp: ENSP00000420243.1:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8683A>G
  hgvsp: ENSP00000419798.1:p.Thr2895Ala
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2895Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

3-195509768-T-TGGCGTGACCTGTGGATACTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509768
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509788
    reference: chr 3
allele count: 1
allele frequency: 4.418132013784572e-5
allele num: 22634
alternate allele: TGGCGTGACCTGTGGATACTG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Thr2895GlnfsTer116
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2895GlnfsTer116
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

3-195509769-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509769
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509769
    reference: chr 3
allele count: 1200
allele frequency: 8.571428571428572e-2
allele num: 14000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8682T>C
  hgvsp: ENST00000480843.1:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8682T>C
  hgvsp: ENST00000466475.1:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8682T>C
  hgvsp: ENST00000477086.1:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8682T>C
  hgvsp: ENST00000475231.1:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8682T>C
  hgvsp: ENST00000470451.1:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8593T>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8682T>C
  hgvsp: ENST00000479406.1:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4443T>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8682T>C
  hgvsp: ENST00000478156.1:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8682T>C
  hgvsp: ENST00000463781.3:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8682T>C
  hgvsp: ENST00000462323.1:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8682T>C
  hgvsp: ENST00000477756.1:c.8682T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 22404
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
hgvs: p.Ala2894Ala
num of homozygotes: 19
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

3-195509769-AGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509769
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509721
    reference: chr 3
allele count: 2
allele frequency: 1.428571428571429e-4
allele num: 14000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val2883_Pro2898del
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: AGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTG
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

3-195509769-AGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509769
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509673
    reference: chr 3
allele count: 2
allele frequency: 1.428571428571429e-4
allele num: 14000
alternate allele: A
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9686
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18889
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3628
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 152
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 220
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 264
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5242
  num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
reference allele: AGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTG
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

3-195509770-G-GGAAGTGTCGGTGACAGGAAGAGGGGTAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509770
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509798
    reference: chr 3
allele count: 1
allele frequency: 4.319654427645789e-5
allele num: 23150
alternate allele: GGAAGTGTCGGTGACAGGAAGAGGGGTAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Ala2894ValfsTer25
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala2894ValfsTer25
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-195509772-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509772
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509772
    reference: chr 3
allele count: 1
allele frequency: 4.348582362149939e-5
allele num: 22996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8679C>T
  hgvsp: ENST00000462323.1:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8679C>T
  hgvsp: ENST00000470451.1:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8679C>T
  hgvsp: ENST00000475231.1:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8679C>T
  hgvsp: ENST00000463781.3:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8596C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8679C>T
  hgvsp: ENST00000477756.1:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4446C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8679C>T
  hgvsp: ENST00000466475.1:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8679C>T
  hgvsp: ENST00000480843.1:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8679C>T
  hgvsp: ENST00000478156.1:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8679C>T
  hgvsp: ENST00000477086.1:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8679C>T
  hgvsp: ENST00000479406.1:c.8679C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His2893His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

3-195509772-GTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509772
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509724
    reference: chr 3
allele count: 10
allele frequency: 4.348582362149939e-4
allele num: 22996
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Val2883_Pro2898del
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24225
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val2883_Pro2898del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: GTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCA
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

3-195509779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509779
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509779
    reference: chr 3
allele count: 1
allele frequency: 4.329379167027448e-5
allele num: 23098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8672C>T
  hgvsp: ENSP00000419989.1:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8672C>T
  hgvsp: ENSP00000420439.1:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8672C>T
  hgvsp: ENSP00000419798.1:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4453C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8672C>T
  hgvsp: ENSP00000417397.1:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8672C>T
  hgvsp: ENSP00000417757.1:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8672C>T
  hgvsp: ENSP00000417722.1:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8603C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8672C>T
  hgvsp: ENSP00000418306.1:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8672C>T
  hgvsp: ENSP00000417498.3:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8672C>T
  hgvsp: ENSP00000417657.1:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8672C>T
  hgvsp: ENSP00000420243.1:p.Thr2891Ile
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23996
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr2891Ile
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

3-195509781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509781
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509781
    reference: chr 3
allele count: 1
allele frequency: 4.330129037845327e-5
allele num: 23094
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8670C>T
  hgvsp: ENST00000463781.3:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8670C>T
  hgvsp: ENST00000479406.1:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8670C>T
  hgvsp: ENST00000462323.1:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8670C>T
  hgvsp: ENST00000466475.1:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4455C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8605C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8670C>T
  hgvsp: ENST00000477756.1:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8670C>T
  hgvsp: ENST00000470451.1:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8670C>T
  hgvsp: ENST00000480843.1:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8670C>T
  hgvsp: ENST00000478156.1:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8670C>T
  hgvsp: ENST00000475231.1:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8670C>T
  hgvsp: ENST00000477086.1:c.8670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 23640
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser2890Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

3-195509782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509782
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509782
    reference: chr 3
allele count: 1
allele frequency: 4.340654570709263e-5
allele num: 23038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8669C>T
  hgvsp: ENSP00000420439.1:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8669C>T
  hgvsp: ENSP00000419989.1:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8606C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8669C>T
  hgvsp: ENSP00000418306.1:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8669C>T
  hgvsp: ENSP00000419798.1:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8669C>T
  hgvsp: ENSP00000417657.1:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8669C>T
  hgvsp: ENSP00000417757.1:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8669C>T
  hgvsp: ENSP00000420243.1:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8669C>T
  hgvsp: ENSP00000417397.1:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8669C>T
  hgvsp: ENSP00000417722.1:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8669C>T
  hgvsp: ENSP00000417498.3:p.Ser2890Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4456C>T
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser2890Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-195509782-GACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGAGGATGCTGAGGAAGGGATGGTGACAGGAAGAGAGGTGGCATGACCTGTGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509782
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509590
    reference: chr 3
allele count: 3
allele frequency: 1.302196371212779e-4
allele num: 23038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Phe2826_Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe2826_Val2889del
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: GACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGAGGATGCTGAGGAAGGGATGGTGACAGGAAGAGAGGTGGCATGACCTGTGA
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/3-195509783-ACAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509783
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509780
    reference: chr 3
allele count: 83
allele frequency: 3.599618353716715e-3
allele num: 23058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8610_83-8608delGTG
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4460_83-4458delGTG
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8665_8667delGTG
  hgvsp: ENSP00000420243.1:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8665_8667delGTG
  hgvsp: ENSP00000417757.1:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8665_8667delGTG
  hgvsp: ENSP00000419798.1:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8665_8667delGTG
  hgvsp: ENSP00000417498.3:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8665_8667delGTG
  hgvsp: ENSP00000417722.1:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8665_8667delGTG
  hgvsp: ENSP00000419989.1:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8665_8667delGTG
  hgvsp: ENSP00000417657.1:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8665_8667delGTG
  hgvsp: ENSP00000420439.1:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8665_8667delGTG
  hgvsp: ENSP00000417397.1:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8665_8667delGTG
  hgvsp: ENSP00000418306.1:p.Val2889del
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Val2889del
num of homozygotes: 7
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: ACAC
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-195509784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509784
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509784
    reference: chr 3
allele count: 1052
allele frequency: 7.229246838922485e-2
allele num: 14552
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8667G>A
  hgvsp: ENST00000480843.1:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8667G>A
  hgvsp: ENST00000466475.1:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8667G>A
  hgvsp: ENST00000463781.3:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8667G>A
  hgvsp: ENST00000477756.1:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8667G>A
  hgvsp: ENST00000462323.1:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8667G>A
  hgvsp: ENST00000475231.1:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8667G>A
  hgvsp: ENST00000477086.1:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8667G>A
  hgvsp: ENST00000470451.1:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8667G>A
  hgvsp: ENST00000478156.1:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8608G>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8667G>A
  hgvsp: ENST00000479406.1:c.8667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4458G>A
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 22849
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
hgvs: p.Val2889Val
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-195509785-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509785
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509785
    reference: chr 3
allele count: 2
allele frequency: 8.751203290452437e-5
allele num: 22854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8666T>G
  hgvsp: ENSP00000417757.1:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8666T>G
  hgvsp: ENSP00000417657.1:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8666T>G
  hgvsp: ENSP00000419989.1:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8666T>G
  hgvsp: ENSP00000420243.1:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8666T>G
  hgvsp: ENSP00000417498.3:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8666T>G
  hgvsp: ENSP00000417397.1:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8609T>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8666T>G
  hgvsp: ENSP00000420439.1:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8666T>G
  hgvsp: ENSP00000417722.1:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8666T>G
  hgvsp: ENSP00000418306.1:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8666T>G
  hgvsp: ENSP00000419798.1:p.Val2889Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4459T>G
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val2889Gly
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

3-195509787-TGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCATGACCTGTGGAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509787
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509742
    reference: chr 3
allele count: 84
allele frequency: 3.646783016410524e-3
allele num: 23034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Ser2874_Ser2888del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 9.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser2874_Ser2888del
num of homozygotes: 7
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: TGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCATGACCTGTGGAC
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-195509790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509790
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509790
    reference: chr 3
allele count: 1
allele frequency: 4.38288920056101e-5
allele num: 22816
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8661C>T
  hgvsp: ENST00000463781.3:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8661C>T
  hgvsp: ENST00000480843.1:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8661C>T
  hgvsp: ENST00000479406.1:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8661C>T
  hgvsp: ENST00000478156.1:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8661C>T
  hgvsp: ENST00000466475.1:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8661C>T
  hgvsp: ENST00000470451.1:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8661C>T
  hgvsp: ENST00000462323.1:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8661C>T
  hgvsp: ENST00000477086.1:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8661C>T
  hgvsp: ENST00000475231.1:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4464C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8661C>T
  hgvsp: ENST00000477756.1:c.8661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8614C>T
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser2887Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

3-195509794-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509794
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509794
    reference: chr 3
allele count: 1
allele frequency: 4.390586582367404e-5
allele num: 22776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8657C>G
  hgvsp: ENSP00000419798.1:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8657C>G
  hgvsp: ENSP00000419989.1:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8657C>G
  hgvsp: ENSP00000417722.1:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8657C>G
  hgvsp: ENSP00000417657.1:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8657C>G
  hgvsp: ENSP00000420439.1:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8657C>G
  hgvsp: ENSP00000417757.1:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4468C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8657C>G
  hgvsp: ENSP00000417397.1:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8657C>G
  hgvsp: ENSP00000417498.3:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8657C>G
  hgvsp: ENSP00000418306.1:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8618C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8657C>G
  hgvsp: ENSP00000420243.1:p.Ala2886Gly
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala2886Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

3-195509795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509795
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509795
    reference: chr 3
allele count: 740
allele frequency: 4.874193123435647e-2
allele num: 15182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8656G>A
  hgvsp: ENSP00000420243.1:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8656G>A
  hgvsp: ENSP00000419798.1:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8656G>A
  hgvsp: ENSP00000418306.1:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4469G>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8656G>A
  hgvsp: ENSP00000417657.1:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8656G>A
  hgvsp: ENSP00000420439.1:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8619G>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8656G>A
  hgvsp: ENSP00000417498.3:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8656G>A
  hgvsp: ENSP00000417722.1:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8656G>A
  hgvsp: ENSP00000417757.1:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8656G>A
  hgvsp: ENSP00000417397.1:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8656G>A
  hgvsp: ENSP00000419989.1:p.Ala2886Thr
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 22522
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 9.75e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
hgvs: p.Ala2886Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

3-195509796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509796
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509796
    reference: chr 3
allele count: 6
allele frequency: 2.647136680490603e-4
allele num: 22666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8655C>T
  hgvsp: ENST00000470451.1:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8655C>T
  hgvsp: ENST00000466475.1:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8620C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8655C>T
  hgvsp: ENST00000475231.1:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4470C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8655C>T
  hgvsp: ENST00000479406.1:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8655C>T
  hgvsp: ENST00000462323.1:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8655C>T
  hgvsp: ENST00000478156.1:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8655C>T
  hgvsp: ENST00000463781.3:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8655C>T
  hgvsp: ENST00000480843.1:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8655C>T
  hgvsp: ENST00000477086.1:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8655C>T
  hgvsp: ENST00000477756.1:c.8655C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp2885Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

3-195509798-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509798
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509798
    reference: chr 3
allele count: 1
allele frequency: 4.450774434751647e-5
allele num: 22468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8653G>A
  hgvsp: ENSP00000417657.1:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8653G>A
  hgvsp: ENSP00000417757.1:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8653G>A
  hgvsp: ENSP00000419989.1:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8653G>A
  hgvsp: ENSP00000420243.1:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8653G>A
  hgvsp: ENSP00000419798.1:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8653G>A
  hgvsp: ENSP00000417397.1:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8653G>A
  hgvsp: ENSP00000418306.1:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8653G>A
  hgvsp: ENSP00000417722.1:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8622G>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8653G>A
  hgvsp: ENSP00000417498.3:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8653G>A
  hgvsp: ENSP00000420439.1:p.Asp2885Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4472G>A
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6684
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp2885Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

3-195509799-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509799
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509799
    reference: chr 3
allele count: 1
allele frequency: 4.424778761061947e-5
allele num: 22600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8652C>T
  hgvsp: ENST00000477756.1:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8623C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8652C>T
  hgvsp: ENST00000463781.3:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8652C>T
  hgvsp: ENST00000480843.1:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8652C>T
  hgvsp: ENST00000466475.1:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8652C>T
  hgvsp: ENST00000479406.1:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8652C>T
  hgvsp: ENST00000477086.1:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8652C>T
  hgvsp: ENST00000462323.1:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8652C>T
  hgvsp: ENST00000470451.1:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4473C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8652C>T
  hgvsp: ENST00000475231.1:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8652C>T
  hgvsp: ENST00000478156.1:c.8652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23664
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2884Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-195509805-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509805
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509805
    reference: chr 3
allele count: 1
allele frequency: 4.546694553059925e-5
allele num: 21994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8646T>A
  hgvsp: ENST00000478156.1:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8646T>A
  hgvsp: ENST00000463781.3:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8646T>A
  hgvsp: ENST00000466475.1:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8646T>A
  hgvsp: ENST00000479406.1:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4479T>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8646T>A
  hgvsp: ENST00000480843.1:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8646T>A
  hgvsp: ENST00000477086.1:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8646T>A
  hgvsp: ENST00000477756.1:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8646T>A
  hgvsp: ENST00000462323.1:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8646T>A
  hgvsp: ENST00000475231.1:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8629T>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8646T>A
  hgvsp: ENST00000470451.1:c.8646T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro2882Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

3-195509810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509810
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509810
    reference: chr 3
allele count: 1
allele frequency: 4.59094665319989e-5
allele num: 21782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8641C>T
  hgvsp: ENSP00000418306.1:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8634C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8641C>T
  hgvsp: ENSP00000417722.1:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8641C>T
  hgvsp: ENSP00000417397.1:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8641C>T
  hgvsp: ENSP00000420243.1:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8641C>T
  hgvsp: ENSP00000419798.1:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8641C>T
  hgvsp: ENSP00000417757.1:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8641C>T
  hgvsp: ENSP00000417657.1:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8641C>T
  hgvsp: ENSP00000419989.1:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8641C>T
  hgvsp: ENSP00000420439.1:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4484C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8641C>T
  hgvsp: ENSP00000417498.3:p.Leu2881Phe
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22765
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu2881Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

3-195509810-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509810
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509809
    reference: chr 3
allele count: 1
allele frequency: 4.59094665319989e-5
allele num: 21782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8640delT
  hgvsp: ENSP00000417757.1:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8640delT
  hgvsp: ENSP00000417498.3:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8640delT
  hgvsp: ENSP00000420439.1:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4485delT
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8640delT
  hgvsp: ENSP00000417657.1:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8635delT
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8640delT
  hgvsp: ENSP00000417722.1:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8640delT
  hgvsp: ENSP00000419798.1:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8640delT
  hgvsp: ENSP00000419989.1:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8640delT
  hgvsp: ENSP00000418306.1:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8640delT
  hgvsp: ENSP00000420243.1:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8640delT
  hgvsp: ENSP00000417397.1:p.Leu2881PhefsTer123
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22765
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu2881PhefsTer123
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: GA
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

3-195509813-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509813
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509813
    reference: chr 3
allele count: 2
allele frequency: 9.45000945000945e-5
allele num: 21164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8638C>T
  hgvsp: ENSP00000417498.3:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8638C>T
  hgvsp: ENSP00000419798.1:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8637C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8638C>T
  hgvsp: ENSP00000417757.1:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8638C>T
  hgvsp: ENSP00000417657.1:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8638C>T
  hgvsp: ENSP00000420439.1:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8638C>T
  hgvsp: ENSP00000417397.1:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8638C>T
  hgvsp: ENSP00000418306.1:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8638C>T
  hgvsp: ENSP00000420243.1:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4487C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8638C>T
  hgvsp: ENSP00000417722.1:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8638C>T
  hgvsp: ENSP00000419989.1:p.Pro2880Ser
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro2880Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

3-195509813-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509813
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509813
    reference: chr 3
allele count: 1
allele frequency: 4.725004725004725e-5
allele num: 21164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8638C>G
  hgvsp: ENSP00000418306.1:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8638C>G
  hgvsp: ENSP00000419798.1:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8638C>G
  hgvsp: ENSP00000417657.1:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8638C>G
  hgvsp: ENSP00000417498.3:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8637C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8638C>G
  hgvsp: ENSP00000417757.1:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8638C>G
  hgvsp: ENSP00000420439.1:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8638C>G
  hgvsp: ENSP00000419989.1:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4487C>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8638C>G
  hgvsp: ENSP00000420243.1:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8638C>G
  hgvsp: ENSP00000417397.1:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8638C>G
  hgvsp: ENSP00000417722.1:p.Pro2880Ala
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro2880Ala
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

3-195509813-GGGTGGCATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509813
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509765
    reference: chr 3
allele count: 451
allele frequency: 2.130977130977131e-2
allele num: 21164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Ser2864_Thr2879del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 22505
  bin: 2.5e0
  variant carriers: 533
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 9.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 7.5e0
  variant carriers: 758
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: p.Ser2864_Thr2879del
num of homozygotes: 9
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: GGGTGGCATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGA
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

3-195509815-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509815
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509815
    reference: chr 3
allele count: 1
allele frequency: 4.936321453253036e-5
allele num: 20258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8636C>A
  hgvsp: ENSP00000419989.1:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8636C>A
  hgvsp: ENSP00000420439.1:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8639C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8636C>A
  hgvsp: ENSP00000417722.1:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8636C>A
  hgvsp: ENSP00000417657.1:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8636C>A
  hgvsp: ENSP00000417757.1:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8636C>A
  hgvsp: ENSP00000418306.1:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4489C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8636C>A
  hgvsp: ENSP00000417397.1:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8636C>A
  hgvsp: ENSP00000417498.3:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8636C>A
  hgvsp: ENSP00000419798.1:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8636C>A
  hgvsp: ENSP00000420243.1:p.Thr2879Asn
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2879Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

3-195509820-A-ATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509820
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509868
    reference: chr 3
allele count: 68
allele frequency: 3.503348789283874e-3
allele num: 19410
alternate allele: ATGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGCG
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 8
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-195509820-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509820
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509820
    reference: chr 3
allele count: 13303
allele frequency: 6.853683668212261e-1
allele num: 19410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8631T>C
  hgvsp: ENST00000479406.1:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8631T>C
  hgvsp: ENST00000477756.1:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8631T>C
  hgvsp: ENST00000477086.1:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8631T>C
  hgvsp: ENST00000466475.1:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8631T>C
  hgvsp: ENST00000480843.1:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8631T>C
  hgvsp: ENST00000463781.3:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8631T>C
  hgvsp: ENST00000470451.1:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4494T>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8631T>C
  hgvsp: ENST00000462323.1:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8644T>C
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8631T>C
  hgvsp: ENST00000475231.1:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8631T>C
  hgvsp: ENST00000478156.1:c.8631T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 7.5e0
  variant carriers: 1934
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.25e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 5643
  bin: 2.5e0
  variant carriers: 674
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
hgvs: p.His2877His
num of homozygotes: 4858
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

3-195509827-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509827
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509827
    reference: chr 3
allele count: 58
allele frequency: 2.818544076197881e-3
allele num: 20578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8624C>A
  hgvsp: ENSP00000417757.1:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8651C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8624C>A
  hgvsp: ENSP00000419989.1:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8624C>A
  hgvsp: ENSP00000418306.1:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8624C>A
  hgvsp: ENSP00000417657.1:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8624C>A
  hgvsp: ENSP00000420243.1:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4501C>A
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8624C>A
  hgvsp: ENSP00000417498.3:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8624C>A
  hgvsp: ENSP00000417722.1:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8624C>A
  hgvsp: ENSP00000419798.1:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8624C>A
  hgvsp: ENSP00000420439.1:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8624C>A
  hgvsp: ENSP00000417397.1:p.Thr2875Lys
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr2875Lys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-195509828-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509828
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509828
    reference: chr 3
allele count: 10
allele frequency: 4.871869823638313e-4
allele num: 20526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8623A>G
  hgvsp: ENSP00000417722.1:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8623A>G
  hgvsp: ENSP00000417657.1:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8652A>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8623A>G
  hgvsp: ENSP00000420243.1:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8623A>G
  hgvsp: ENSP00000419989.1:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8623A>G
  hgvsp: ENSP00000420439.1:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8623A>G
  hgvsp: ENSP00000417498.3:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8623A>G
  hgvsp: ENSP00000418306.1:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8623A>G
  hgvsp: ENSP00000417397.1:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8623A>G
  hgvsp: ENSP00000417757.1:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4502A>G
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8623A>G
  hgvsp: ENSP00000419798.1:p.Thr2875Ala
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22087
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr2875Ala
num of homozygotes: 2
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-195509830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509830
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509830
    reference: chr 3
allele count: 1
allele frequency: 4.87757291971515e-5
allele num: 20502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsc: ENST00000475231.1:c.8621C>T
  hgvsp: ENSP00000420243.1:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsc: ENST00000470451.1:c.8621C>T
  hgvsp: ENSP00000420439.1:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsc: ENST00000477756.1:c.8621C>T
  hgvsp: ENSP00000418306.1:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  hgvsc: ENST00000349607.4:c.83-8654C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  hgvsc: ENST00000346145.4:c.83-4504C>T
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsc: ENST00000478156.1:c.8621C>T
  hgvsp: ENSP00000419798.1:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsc: ENST00000466475.1:c.8621C>T
  hgvsp: ENSP00000417722.1:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsc: ENST00000463781.3:c.8621C>T
  hgvsp: ENSP00000417498.3:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsc: ENST00000462323.1:c.8621C>T
  hgvsp: ENSP00000417397.1:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsc: ENST00000477086.1:c.8621C>T
  hgvsp: ENSP00000419989.1:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsc: ENST00000480843.1:c.8621C>T
  hgvsp: ENSP00000417657.1:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsc: ENST00000479406.1:c.8621C>T
  hgvsp: ENSP00000417757.1:p.Ser2874Phe
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser2874Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

3-195509830-GACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGAGGATGCTGAGGAAGGGATGGTGACAGGAAGAGAGGTGGCATGACCTGTGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 195509830
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 195509686
    reference: chr 3
allele count: 23
allele frequency: 1.121841771534484e-3
allele num: 20502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420439
  ensembl transcript: ENST00000470451
  gene symbol: MUC4
  hgvsp: ENSP00000420439.1:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419989
  ensembl transcript: ENST00000477086
  gene symbol: MUC4
  hgvsp: ENSP00000419989.1:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417498
  ensembl transcript: ENST00000463781
  gene symbol: MUC4
  hgvsp: ENSP00000417498.3:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417657
  ensembl transcript: ENST00000480843
  gene symbol: MUC4
  hgvsp: ENSP00000417657.1:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000420243
  ensembl transcript: ENST00000475231
  gene symbol: MUC4
  hgvsp: ENSP00000420243.1:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000338109
  ensembl transcript: ENST00000349607
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417397
  ensembl transcript: ENST00000462323
  gene symbol: MUC4
  hgvsp: ENSP00000417397.1:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417757
  ensembl transcript: ENST00000479406
  gene symbol: MUC4
  hgvsp: ENSP00000417757.1:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000417722
  ensembl transcript: ENST00000466475
  gene symbol: MUC4
  hgvsp: ENSP00000417722.1:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000418306
  ensembl transcript: ENST00000477756
  gene symbol: MUC4
  hgvsp: ENSP00000418306.1:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000304207
  ensembl transcript: ENST00000346145
  gene symbol: MUC4
  variant of: http://identifiers.org/hgnc/7514
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145113
  ensembl protein: ENSP00000419798
  ensembl transcript: ENST00000478156
  gene symbol: MUC4
  hgvsp: ENSP00000419798.1:p.Phe2826_Val2873del
  variant of: http://identifiers.org/hgnc/7514
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe2826_Val2873del
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: GACACTGAGGAAGCGTCGGTGACAGGAAGAGAGGTGGCGTGACCTGTGGACACTGAGGAAGCGTCGGTGACAGGAAGAGGGGTGGTGTGACCTGAGGATGCTGAGGAAGGGATGGTGACAGGAAGAGAGGTGGCATGACCTGTGA

GenotypeDepth
all individuals: 189
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17522
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7316
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.204238921001927e-4
allele num: 8304
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

MQ
type: SiteQuality
SIO_000300: 4.395e1

VQSLOD
type: SiteQuality
SIO_000300: -3.404e0

MQRankSum
type: SiteQuality
SIO_000300: -1.637e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.799e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.61e-1

QD
type: SiteQuality
SIO_000300: 3.08e0

DP
type: SiteQuality
SIO_000300: 1.522601e6

GenotypeDepth
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17485
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7319
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1059
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.242197253433209e-4
allele num: 1602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.183406113537118e-3
allele num: 458
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

DP
type: SiteQuality
SIO_000300: 1.522524e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.059e0

MQ
type: SiteQuality
SIO_000300: 4.537e1

MQRankSum
type: SiteQuality
SIO_000300: -2.275e0

QD
type: SiteQuality
SIO_000300: 3.59e0

FS
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.787e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.903e0

GenotypeDepth
all individuals: 269
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 375
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7318
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17726
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 6.521739130434782e-3
allele num: 460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.77e0

VQSLOD
type: SiteQuality
SIO_000300: -1.583e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.79e-1

FS
type: SiteQuality
SIO_000300: 1.941e0

MQ
type: SiteQuality
SIO_000300: 4.474e1

DP
type: SiteQuality
SIO_000300: 1.523219e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.033e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.14e-2

GenotypeDepth
all individuals: 578
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 145
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 154
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2117
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18015
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7303
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 6.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1800
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.173913043478261e-3
allele num: 460
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.656050955414013e-3
allele num: 7850
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.626e0

MQRankSum
type: SiteQuality
SIO_000300: -3.283e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-2

DP
type: SiteQuality
SIO_000300: 1.525076e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

QD
type: SiteQuality
SIO_000300: 2.86e0

VQSLOD
type: SiteQuality
SIO_000300: -3.368e0

FS
type: SiteQuality
SIO_000300: 7.784e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e0

GenotypeDepth
all individuals: 129
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7039
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2079
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7319
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.537427048972342e-4
allele num: 7882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.316e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.331e0

DP
type: SiteQuality
SIO_000300: 1.524595e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.607e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.154e0

QD
type: SiteQuality
SIO_000300: 6.97e0

MQ
type: SiteQuality
SIO_000300: 4.062e1

GenotypeDepth
all individuals: 218
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15830
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6992
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5544
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 7.331378299120235e-4
allele num: 1364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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Other
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MQ
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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DP
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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FS
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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Other
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South Asian
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Latino
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African
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European (Non-Finnish)
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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MQ
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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BaseQRankSum
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DP
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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ClippingRankSum
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African
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East Asian
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South Asian
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MQ
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 8468
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Other
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East Asian
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QD
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MQ
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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QD
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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East Asian
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African
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Other
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European (Finnish)
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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MQ
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DP
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MQRankSum
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SIO_000300: -7.27e-1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 1
allele frequency: 6.142506142506142e-4
allele num: 1628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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MQ
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.26806999746386e-4
allele num: 7886
num of homozygotes: 0

African
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allele frequency: 5.771495877502945e-2
allele num: 1698
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 6.355932203389831e-3
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European (Non-Finnish)
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East Asian
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Other
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Non-Finnish)
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allele num: 8466
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East Asian
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Latino
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South Asian
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European (Finnish)
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 277
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.092050209205021e-3
allele num: 478
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1882
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -9.54e-1

VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 5.87e-2

QD
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ReadPosRankSum
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SIO_000300: 1.1e-1

DP
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SIO_000300: 1.513191e6

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

African
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allele count: 1
allele frequency: 5.302226935312832e-4
allele num: 1886
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7882
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8754
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 4.265e1

InbreedingCoeff
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SIO_000300: 6.02e-2

BaseQRankSum
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SIO_000300: 9.22e-1

ReadPosRankSum
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SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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DP
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SIO_000300: 1.514831e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1900
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 480
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.263467632412856e-4
allele num: 8836
num of homozygotes: 0

Other
type: Population
allele count: 0
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ClippingRankSum
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SIO_000300: 3.18e0

BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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SIO_000300: -1.934e0

DP
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InbreedingCoeff
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SIO_000300: -6.36e-2

MQ
type: SiteQuality
SIO_000300: 4.58e1

QD
type: SiteQuality
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VQSLOD
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.12637981527371e-4
allele num: 8878
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.267748478701826e-4
allele num: 7888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.321e-1

BaseQRankSum
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SIO_000300: -7.154e0

MQ
type: SiteQuality
SIO_000300: 4.959e1

MQRankSum
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SIO_000300: 3.23e0

InbreedingCoeff
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SIO_000300: -6.370000000000001e-2

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.626e0

ClippingRankSum
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SIO_000300: -1.051e0

DP
type: SiteQuality
SIO_000300: 1.515566e6

QD
type: SiteQuality
SIO_000300: 6.88e0

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.552322613578356e-4
allele num: 7836
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
type: SiteQuality
SIO_000300: 1.4761e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

African
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allele count: 2
allele frequency: 1.197604790419162e-3
allele num: 1670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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SIO_000300: 1.4761e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 427
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 28
allele frequency: 1.15702479338843e-1
allele num: 242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 865
allele frequency: 1.04016354016354e-1
allele num: 8316
num of homozygotes: 20

Latino
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allele count: 64
allele frequency: 1.409691629955947e-1
allele num: 454
num of homozygotes: 1

European (Finnish)
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allele count: 152
allele frequency: 8.568207440811725e-2
allele num: 1774
num of homozygotes: 1

African
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allele count: 63
allele frequency: 3.772455089820359e-2
allele num: 1670
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East Asian
type: Population
allele count: 130
allele frequency: 1.993865030674846e-1
allele num: 652
num of homozygotes: 0

South Asian
type: Population
allele count: 637
allele frequency: 8.129147524247064e-2
allele num: 7836
num of homozygotes: 2

ClippingRankSum
type: SiteQuality
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DP
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SIO_000300: 1.4761e6

MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 2.004e0

ReadPosRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.533742331288344e-3
allele num: 652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.531e0

FS
type: SiteQuality
SIO_000300: 2.004e0

VQSLOD
type: SiteQuality
SIO_000300: -8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.055e-1

QD
type: SiteQuality
SIO_000300: 6.3e-1

DP
type: SiteQuality
SIO_000300: 1.4761e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 4.544e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.211e0

GenotypeDepth
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bin: 4.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 224
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.607503607503608e-4
allele num: 8316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 2.004e0

MQ
type: SiteQuality
SIO_000300: 4.544e1

ClippingRankSum
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SIO_000300: -2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.531e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.211e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.055e-1

QD
type: SiteQuality
SIO_000300: 6.3e-1

DP
type: SiteQuality
SIO_000300: 1.4761e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1328
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variant carriers: 0

GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.28675966155957e-4
allele num: 8746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1814
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.483e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.660000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.091e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.025e0

DP
type: SiteQuality
SIO_000300: 1.534365e6

MQ
type: SiteQuality
SIO_000300: 4.588e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

QD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.9e1

GenotypeDepth
all individuals: 141
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 154
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variant carriers: 0

GenotypeQuality
all individuals: 248
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 7405
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variant carriers: 14

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.453488372093023e-3
allele num: 688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.071352046282408e-4
allele num: 9334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 5.808325266214908e-3
allele num: 2066
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.368e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 1.537364e6

FS
type: SiteQuality
SIO_000300: 2.695e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 4.592e1

QD
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeDepth
all individuals: 151
bin: 7.25e1
variant carriers: 7

GenotypeDepth
all individuals: 122
bin: 5.25e1
variant carriers: 5

GenotypeDepth
all individuals: 153
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variant carriers: 9

GenotypeDepth
all individuals: 129
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variant carriers: 4

GenotypeDepth
all individuals: 110
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GenotypeQuality
all individuals: 64
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variant carriers: 1

GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 5173
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variant carriers: 3

GenotypeQuality
all individuals: 1394
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variant carriers: 3

GenotypeQuality
all individuals: 241
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GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 921
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GenotypeQuality
all individuals: 18267
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5374
bin: 9.75e1
variant carriers: 264

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 230
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variant carriers: 3

GenotypeQuality
all individuals: 159
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 195
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 91
allele frequency: 1.364727054589082e-2
allele num: 6668
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 9.67741935483871e-3
allele num: 310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 20
allele frequency: 1.291989664082687e-2
allele num: 1548
num of homozygotes: 0

African
type: Population
allele count: 37
allele frequency: 3.578336557059961e-2
allele num: 1034
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 3.0e-2
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 3.823529411764706e-2
allele num: 340
num of homozygotes: 0

South Asian
type: Population
allele count: 118
allele frequency: 1.611581535099699e-2
allele num: 7322
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 4.268e1

MQRankSum
type: SiteQuality
SIO_000300: -2.045e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
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SIO_000300: -1.006e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.51e-2

DP
type: SiteQuality
SIO_000300: 1.443923e6

VQSLOD
type: SiteQuality
SIO_000300: -9.097e-1

FS
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 7.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.401e0

GenotypeDepth
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bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 141
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1560
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GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 202
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 268
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GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.84027105517909e-4
allele num: 2066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 1.537364e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.368e-1

MQ
type: SiteQuality
SIO_000300: 4.592e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 2.695e0

VQSLOD
type: SiteQuality
SIO_000300: 9.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeDepth
all individuals: 3402
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 149
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 2418
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 273
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GenotypeQuality
all individuals: 2070
bin: 2.5e0
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GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 582
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GenotypeQuality
all individuals: 127
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 130
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 220
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GenotypeQuality
all individuals: 249
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.798464491362764e-4
allele num: 2084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.4577e1

DP
type: SiteQuality
SIO_000300: 1.537853e6

VQSLOD
type: SiteQuality
SIO_000300: -9.466e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.51e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQ
type: SiteQuality
SIO_000300: 4.713e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
all individuals: 271
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
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GenotypeQuality
all individuals: 220
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.061571125265393e-4
allele num: 9420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

DP
type: SiteQuality
SIO_000300: 1.537853e6

MQ
type: SiteQuality
SIO_000300: 4.713e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.51e-2

QD
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SIO_000300: 1.14e0

BaseQRankSum
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SIO_000300: 1.95e0

VQSLOD
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SIO_000300: -9.466e-1

FS
type: SiteQuality
SIO_000300: 1.4577e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.13e-1

GenotypeDepth
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variant carriers: 1001

GenotypeDepth
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variant carriers: 11

GenotypeDepth
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variant carriers: 7

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 1048

GenotypeQuality
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bin: 4.75e1
variant carriers: 16

East Asian
type: Population
allele count: 35
allele frequency: 1.590909090909091e-1
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 165
allele frequency: 1.15546218487395e-1
allele num: 1428
num of homozygotes: 18

Latino
type: Population
allele count: 18
allele frequency: 6.818181818181818e-2
allele num: 264
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 383
allele frequency: 7.306371613887828e-2
allele num: 5242
num of homozygotes: 0

Other
type: Population
allele count: 24
allele frequency: 1.578947368421053e-1
allele num: 152
num of homozygotes: 0

South Asian
type: Population
allele count: 458
allele frequency: 8.276111311890133e-2
allele num: 5534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 117
allele frequency: 1.008620689655172e-1
allele num: 1160
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.615679e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

QD
type: SiteQuality
SIO_000300: 4.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 4.569e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.889e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 1.503e0

MQRankSum
type: SiteQuality
SIO_000300: -5.713e0

VQSLOD
type: SiteQuality
SIO_000300: -4.785e-1

GenotypeDepth
all individuals: 240
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variant carriers: 1

GenotypeDepth
all individuals: 132
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 390
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.907668828691339e-4
allele num: 5242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.807011203469462e-4
allele num: 5534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1428
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.503e0

DP
type: SiteQuality
SIO_000300: 1.615679e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.889e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -5.713e0

QD
type: SiteQuality
SIO_000300: 4.87e0

MQ
type: SiteQuality
SIO_000300: 4.569e1

VQSLOD
type: SiteQuality
SIO_000300: -4.785e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1428
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.614022406938923e-4
allele num: 5534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.889e-1

FS
type: SiteQuality
SIO_000300: 1.503e0

QD
type: SiteQuality
SIO_000300: 4.87e0

VQSLOD
type: SiteQuality
SIO_000300: -4.785e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -5.713e0

MQ
type: SiteQuality
SIO_000300: 4.569e1

DP
type: SiteQuality
SIO_000300: 1.615679e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 7725
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 770
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GenotypeQuality
all individuals: 202
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.027326895418122e-4
allele num: 9734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.006e0

VQSLOD
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DP
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SIO_000300: 1.531175e6

MQ
type: SiteQuality
SIO_000300: 4.73e1

FS
type: SiteQuality
SIO_000300: 1.0586e1

QD
type: SiteQuality
SIO_000300: 4.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.438e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.956e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

GenotypeDepth
all individuals: 163
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variant carriers: 0

GenotypeDepth
all individuals: 135
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variant carriers: 0

GenotypeDepth
all individuals: 132
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GenotypeDepth
all individuals: 147
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GenotypeDepth
all individuals: 188
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 243
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.039717196922437e-4
allele num: 9618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.716e0

VQSLOD
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SIO_000300: -3.774e0

MQ
type: SiteQuality
SIO_000300: 4.526e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

QD
type: SiteQuality
SIO_000300: 1.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.531338e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.15e-2

GenotypeDepth
all individuals: 147
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variant carriers: 0

GenotypeDepth
all individuals: 124
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variant carriers: 0

GenotypeQuality
all individuals: 30
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7659
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variant carriers: 9

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.366120218579235e-3
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.039717196922437e-4
allele num: 9618
num of homozygotes: 0

Latino
type: Population
allele count: 0
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allele num: 506
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.618080243778568e-4
allele num: 7876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 9.115770282588879e-4
allele num: 2194
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.716e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
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ReadPosRankSum
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SIO_000300: 3.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.15e-2

DP
type: SiteQuality
SIO_000300: 1.531338e6

VQSLOD
type: SiteQuality
SIO_000300: -3.774e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

QD
type: SiteQuality
SIO_000300: 1.8e-1

GenotypeDepth
all individuals: 150
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
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GenotypeDepth
all individuals: 145
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.02880658436214e-4
allele num: 9720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.051e1

DP
type: SiteQuality
SIO_000300: 1.52718e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.252000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.302e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.36e-1

FS
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 7.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.88e-2

GenotypeDepth
all individuals: 6883
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 161
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 188
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variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 7698
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.36986301369863e-3
allele num: 730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.525735e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.346e0

MQ
type: SiteQuality
SIO_000300: 4.679e1

QD
type: SiteQuality
SIO_000300: 4.95e0

FS
type: SiteQuality
SIO_000300: 1.0547e1

MQRankSum
type: SiteQuality
SIO_000300: 6.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.073e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.042e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 52
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7658
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.574565416285453e-4
allele num: 2186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.029e0

QD
type: SiteQuality
SIO_000300: 3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.013e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.43e-2

DP
type: SiteQuality
SIO_000300: 1.527623e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.192e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e0

GenotypeDepth
all individuals: 149
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6888
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
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variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1099
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
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GenotypeQuality
all individuals: 220
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21649
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GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 130
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GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 2185
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variant carriers: 0

GenotypeQuality
all individuals: 7658
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1010
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 6.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.99203187250996e-3
allele num: 502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 9.149130832570906e-4
allele num: 2186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.43e-2

FS
type: SiteQuality
SIO_000300: 3.029e0

DP
type: SiteQuality
SIO_000300: 1.527623e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e0

VQSLOD
type: SiteQuality
SIO_000300: -3.192e0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQ
type: SiteQuality
SIO_000300: 5.013e1

QD
type: SiteQuality
SIO_000300: 3.0e-2

GenotypeDepth
all individuals: 160
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 152
bin: 8.25e1
variant carriers: 3

GenotypeDepth
all individuals: 168
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variant carriers: 1

GenotypeDepth
all individuals: 147
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 2104
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variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.25e1
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GenotypeQuality
all individuals: 233
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variant carriers: 1

GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
all individuals: 1955
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variant carriers: 0

GenotypeQuality
all individuals: 21382
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GenotypeQuality
all individuals: 7690
bin: 9.75e1
variant carriers: 73

GenotypeQuality
all individuals: 1288
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variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 1112
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variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
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GenotypeQuality
all individuals: 469
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GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.273560876209883e-4
allele num: 7852
num of homozygotes: 0

African
type: Population
allele count: 73
allele frequency: 3.32725615314494e-2
allele num: 2194
num of homozygotes: 7

Latino
type: Population
allele count: 3
allele frequency: 5.952380952380952e-3
allele num: 504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 6.184291898577613e-4
allele num: 9702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

MQ
type: SiteQuality
SIO_000300: 4.438e1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e0

FS
type: SiteQuality
SIO_000300: 7.526e0

DP
type: SiteQuality
SIO_000300: 1.523603e6

VQSLOD
type: SiteQuality
SIO_000300: -1.353e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 2.072e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.48e-2

GenotypeDepth
all individuals: 152
bin: 4.75e1
variant carriers: 6

GenotypeDepth
all individuals: 118
bin: 5.75e1
variant carriers: 5

GenotypeDepth
all individuals: 6823
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variant carriers: 840

GenotypeDepth
all individuals: 141
bin: 6.75e1
variant carriers: 9

GenotypeDepth
all individuals: 184
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variant carriers: 28

GenotypeQuality
all individuals: 97
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variant carriers: 11

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 88
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variant carriers: 13

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 418
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 145
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 170
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 209
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 1151
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variant carriers: 8

GenotypeQuality
all individuals: 10717
bin: 2.5e0
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GenotypeQuality
all individuals: 391
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variant carriers: 3

GenotypeQuality
all individuals: 1570
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
all individuals: 85
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GenotypeQuality
all individuals: 18117
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GenotypeQuality
all individuals: 155
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GenotypeQuality
all individuals: 500
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variant carriers: 4

GenotypeQuality
all individuals: 3834
bin: 9.75e1
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GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 12

African
type: Population
allele count: 86
allele frequency: 6.125356125356125e-2
allele num: 1404
num of homozygotes: 1

Latino
type: Population
allele count: 14
allele frequency: 5.223880597014925e-2
allele num: 268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 345
allele frequency: 6.21173928700036e-2
allele num: 5554
num of homozygotes: 0

South Asian
type: Population
allele count: 449
allele frequency: 7.935666313184871e-2
allele num: 5658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 100
allele frequency: 7.923930269413629e-2
allele num: 1262
num of homozygotes: 0

East Asian
type: Population
allele count: 35
allele frequency: 1.446280991735537e-1
allele num: 242
num of homozygotes: 0

Other
type: Population
allele count: 23
allele frequency: 1.402439024390244e-1
allele num: 164
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.952e0

VQSLOD
type: SiteQuality
SIO_000300: -4.132e-1

DP
type: SiteQuality
SIO_000300: 1.51375e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 4.645e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.172e-1

FS
type: SiteQuality
SIO_000300: 2.531e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.59e0

GenotypeDepth
all individuals: 164
bin: 7.25e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 173
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GenotypeDepth
all individuals: 126
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GenotypeQuality
all individuals: 492
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GenotypeQuality
all individuals: 143
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GenotypeQuality
all individuals: 195
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GenotypeQuality
all individuals: 7511
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 170
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GenotypeQuality
all individuals: 216
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GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 238
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.935834155972359e-4
allele num: 2026
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.273885350318471e-4
allele num: 7850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.68e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

DP
type: SiteQuality
SIO_000300: 1.48897e6

VQSLOD
type: SiteQuality
SIO_000300: -3.391e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.75e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.31e-1

FS
type: SiteQuality
SIO_000300: 5.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.285e0

QD
type: SiteQuality
SIO_000300: 3.69e0

GenotypeDepth
all individuals: 165
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variant carriers: 2

GenotypeDepth
all individuals: 386
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GenotypeQuality
all individuals: 246
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GenotypeQuality
all individuals: 131
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GenotypeQuality
all individuals: 1055
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GenotypeQuality
all individuals: 1239
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GenotypeQuality
all individuals: 20771
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GenotypeQuality
all individuals: 488
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GenotypeQuality
all individuals: 240
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 1
allele frequency: 1.273236567354214e-4
allele num: 7854
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 6.166495375128469e-4
allele num: 9730
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 74
allele frequency: 3.422756706753007e-2
allele num: 2162
num of homozygotes: 7

Latino
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allele frequency: 6.072874493927126e-3
allele num: 494
num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
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MQ
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.273885350318471e-4
allele num: 7850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1990
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.834e0

FS
type: SiteQuality
SIO_000300: 7.235e0

InbreedingCoeff
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MQRankSum
type: SiteQuality
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QD
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DP
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SIO_000300: 1.486102e6

MQ
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SIO_000300: 4.793e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1970
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GenotypeQuality
all individuals: 454
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.275835672365399e-4
allele num: 7838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.99e1

BaseQRankSum
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SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 1.488913e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.81e-2

MQ
type: SiteQuality
SIO_000300: 4.699e1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

GenotypeDepth
all individuals: 143
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variant carriers: 8

GenotypeDepth
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variant carriers: 5

GenotypeDepth
all individuals: 191
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variant carriers: 19

GenotypeDepth
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variant carriers: 4

GenotypeDepth
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 672

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 223
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variant carriers: 6

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 245
allele frequency: 4.251995834779591e-2
allele num: 5762
num of homozygotes: 0

South Asian
type: Population
allele count: 315
allele frequency: 5.271084337349398e-2
allele num: 5976
num of homozygotes: 0

African
type: Population
allele count: 60
allele frequency: 4.437869822485207e-2
allele num: 1352
num of homozygotes: 0

Other
type: Population
allele count: 17
allele frequency: 9.883720930232558e-2
allele num: 172
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 3.985507246376811e-2
allele num: 276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 66
allele frequency: 4.721030042918455e-2
allele num: 1398
num of homozygotes: 0

East Asian
type: Population
allele count: 26
allele frequency: 1.056910569105691e-1
allele num: 246
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-2

FS
type: SiteQuality
SIO_000300: 2.666e0

BaseQRankSum
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SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.088e-1

DP
type: SiteQuality
SIO_000300: 1.479566e6

MQRankSum
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SIO_000300: -3.895e0

MQ
type: SiteQuality
SIO_000300: 4.517e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
type: SiteQuality
SIO_000300: 5.23e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
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South Asian
type: Population
allele count: 5
allele frequency: 6.369426751592356e-4
allele num: 7850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1824
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African
type: Population
allele count: 1
allele frequency: 5.170630816959669e-4
allele num: 1934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.19e0

ClippingRankSum
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SIO_000300: 3.14e-1

DP
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MQRankSum
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BaseQRankSum
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MQ
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FS
type: SiteQuality
SIO_000300: 7.32e-1

InbreedingCoeff
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SIO_000300: -5.96e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.082e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1810
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
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African
type: Population
allele count: 1
allele frequency: 5.382131324004305e-4
allele num: 1858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQ
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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SIO_000300: -1.031e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 5.219206680584551e-4
allele num: 1916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -6.02e-2

BaseQRankSum
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MQ
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SIO_000300: 5.043e1

VQSLOD
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DP
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SIO_000300: 1.474463e6

FS
type: SiteQuality
SIO_000300: 5.276e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

MQRankSum
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SIO_000300: 3.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1714
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.090988435522584e-4
allele num: 9166
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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SIO_000300: 1.6665e1

MQRankSum
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SIO_000300: -2.84e0

BaseQRankSum
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MQ
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ClippingRankSum
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SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.473502e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.400560224089636e-3
allele num: 714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

BaseQRankSum
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SIO_000300: -1.023e0

InbreedingCoeff
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DP
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FS
type: SiteQuality
SIO_000300: 7.751e0

ClippingRankSum
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SIO_000300: 4.37e-1

MQRankSum
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SIO_000300: 1.38e0

VQSLOD
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SIO_000300: -7.501e-1

QD
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SIO_000300: 8.1e0

MQ
type: SiteQuality
SIO_000300: 5.275e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 76
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.27258844489692e-4
allele num: 7858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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BaseQRankSum
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FS
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SIO_000300: 7.751e0

MQ
type: SiteQuality
SIO_000300: 5.275e1

VQSLOD
type: SiteQuality
SIO_000300: -7.501e-1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.324503311258278e-3
allele num: 1510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.101e0

BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.899e-1

ClippingRankSum
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.497005988023952e-3
allele num: 668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.899e-1

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 7.36e-1

GenotypeDepth
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variant carriers: 13

GenotypeDepth
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 111

GenotypeQuality
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GenotypeQuality
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variant carriers: 77

GenotypeQuality
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variant carriers: 259

GenotypeQuality
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variant carriers: 54

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 117

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 406

GenotypeQuality
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GenotypeQuality
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variant carriers: 52

Latino
type: Population
allele count: 9
allele frequency: 2.036199095022624e-2
allele num: 442
num of homozygotes: 0

South Asian
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allele count: 92
allele frequency: 1.18191161356629e-2
allele num: 7784
num of homozygotes: 3

European (Finnish)
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allele count: 27
allele frequency: 1.595744680851064e-2
allele num: 1692
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 8.771929824561403e-3
allele num: 228
num of homozygotes: 0

European (Non-Finnish)
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allele count: 179
allele frequency: 2.024886877828054e-2
allele num: 8840
num of homozygotes: 0

African
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allele count: 134
allele frequency: 8.874172185430464e-2
allele num: 1510
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East Asian
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allele count: 8
allele frequency: 1.197604790419162e-2
allele num: 668
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QD
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SIO_000300: 4.5e-1

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

DP
type: SiteQuality
SIO_000300: 1.493343e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 201
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 48
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.182312603452353e-4
allele num: 8458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.549e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e0

MQ
type: SiteQuality
SIO_000300: 4.767e1

FS
type: SiteQuality
SIO_000300: 1.1288e1

DP
type: SiteQuality
SIO_000300: 1.425342e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.758e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.16e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

QD
type: SiteQuality
SIO_000300: 8.74e0

GenotypeQuality
all individuals: 615
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 5

GenotypeQuality
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bin: 3.25e1
variant carriers: 5

GenotypeQuality
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bin: 1.75e1
variant carriers: 7

GenotypeQuality
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variant carriers: 10

GenotypeQuality
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bin: 2.5e0
variant carriers: 6

GenotypeQuality
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variant carriers: 19

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 8

GenotypeQuality
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bin: 2.25e1
variant carriers: 9

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 7.407407407407407e-4
allele num: 1350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 8.217446270543615e-3
allele num: 1582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.52820227841067e-3
allele num: 7198
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 43
allele frequency: 5.406084988684938e-3
allele num: 7954
num of homozygotes: 6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 4.365e1

QD
type: SiteQuality
SIO_000300: 2.552e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.453441e6

MQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.919e-1

GenotypeDepth
all individuals: 338
bin: 1.75e1
variant carriers: 232

GenotypeDepth
all individuals: 181
bin: 8.25e1
variant carriers: 152

GenotypeDepth
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bin: 7.75e1
variant carriers: 141

GenotypeDepth
all individuals: 6211
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variant carriers: 5976

GenotypeDepth
all individuals: 141
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variant carriers: 117

GenotypeQuality
all individuals: 2967
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variant carriers: 308

GenotypeQuality
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variant carriers: 1049

GenotypeQuality
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variant carriers: 78

GenotypeQuality
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bin: 8.75e1
variant carriers: 73

GenotypeQuality
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bin: 1.25e1
variant carriers: 538

GenotypeQuality
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bin: 3.25e1
variant carriers: 228

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 80

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 237

GenotypeQuality
all individuals: 7371
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variant carriers: 7185

GenotypeQuality
all individuals: 3804
bin: 2.5e0
variant carriers: 100

GenotypeQuality
all individuals: 99
bin: 9.25e1
variant carriers: 74

GenotypeQuality
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variant carriers: 90

GenotypeQuality
all individuals: 803
bin: 2.25e1
variant carriers: 639

GenotypeQuality
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bin: 3.75e1
variant carriers: 149

GenotypeQuality
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bin: 7.75e1
variant carriers: 82

GenotypeQuality
all individuals: 112
bin: 7.25e1
variant carriers: 47

GenotypeQuality
all individuals: 111
bin: 8.25e1
variant carriers: 66

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 107

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 116

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 88

African
type: Population
allele count: 1063
allele frequency: 7.874074074074074e-1
allele num: 1350
num of homozygotes: 427

East Asian
type: Population
allele count: 559
allele frequency: 8.008595988538681e-1
allele num: 698
num of homozygotes: 218

Latino
type: Population
allele count: 262
allele frequency: 6.267942583732058e-1
allele num: 418
num of homozygotes: 87

South Asian
type: Population
allele count: 4377
allele frequency: 6.08085579327591e-1
allele num: 7198
num of homozygotes: 1407

European (Non-Finnish)
type: Population
allele count: 5791
allele frequency: 7.280613527784763e-1
allele num: 7954
num of homozygotes: 2274

European (Finnish)
type: Population
allele count: 1091
allele frequency: 6.896333754740834e-1
allele num: 1582
num of homozygotes: 382

Other
type: Population
allele count: 160
allele frequency: 7.619047619047619e-1
allele num: 210
num of homozygotes: 63

QD
type: SiteQuality
SIO_000300: 2.552e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.919e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

MQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

DP
type: SiteQuality
SIO_000300: 1.453441e6

MQ
type: SiteQuality
SIO_000300: 4.365e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

GenotypeDepth
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 194
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variant carriers: 0

GenotypeDepth
all individuals: 136
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GenotypeDepth
all individuals: 6171
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variant carriers: 54

GenotypeDepth
all individuals: 176
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1824
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GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 139
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GenotypeQuality
all individuals: 422
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GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 203
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GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 1774
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GenotypeQuality
all individuals: 20436
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GenotypeQuality
all individuals: 6949
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variant carriers: 59

GenotypeQuality
all individuals: 659
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variant carriers: 0

GenotypeQuality
all individuals: 937
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variant carriers: 0

GenotypeQuality
all individuals: 1082
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variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

South Asian
type: Population
allele count: 58
allele frequency: 7.603565810173046e-3
allele num: 7628
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.49e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.887e0

FS
type: SiteQuality
SIO_000300: 4.591e0

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

MQ
type: SiteQuality
SIO_000300: 4.118e1

QD
type: SiteQuality
SIO_000300: 5.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.481e-1

DP
type: SiteQuality
SIO_000300: 1.408952e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

GenotypeDepth
all individuals: 268
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 197
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GenotypeDepth
all individuals: 6149
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variant carriers: 2

GenotypeDepth
all individuals: 201
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variant carriers: 1

GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 138
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GenotypeQuality
all individuals: 1883
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GenotypeQuality
all individuals: 642
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variant carriers: 0

GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 1821
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GenotypeQuality
all individuals: 196
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variant carriers: 0

GenotypeQuality
all individuals: 190
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 928
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variant carriers: 0

GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 20375
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GenotypeQuality
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GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 6936
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GenotypeQuality
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GenotypeQuality
all individuals: 1062
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GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 1

African
type: Population
allele count: 2
allele frequency: 1.499250374812594e-3
allele num: 1334
num of homozygotes: 1

South Asian
type: Population
allele count: 7
allele frequency: 9.186351706036745e-4
allele num: 7620
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.155001155001155e-4
allele num: 8658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.312e0

DP
type: SiteQuality
SIO_000300: 1.406044e6

FS
type: SiteQuality
SIO_000300: 1.2799e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.519999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.465e0

QD
type: SiteQuality
SIO_000300: 1.405e1

MQ
type: SiteQuality
SIO_000300: 3.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

GenotypeDepth
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 188
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variant carriers: 0

GenotypeDepth
all individuals: 153
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GenotypeDepth
all individuals: 193
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GenotypeDepth
all individuals: 197
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GenotypeQuality
all individuals: 433
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GenotypeQuality
all individuals: 1741
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 668
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GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 227
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 198
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.317870321560359e-4
allele num: 7588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 2.0e-2

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.71e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.023e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.47e-2

FS
type: SiteQuality
SIO_000300: 2.714e0

DP
type: SiteQuality
SIO_000300: 1.409122e6

GenotypeDepth
all individuals: 153
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variant carriers: 1

GenotypeDepth
all individuals: 6153
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 198
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6907
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variant carriers: 13

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 2

South Asian
type: Population
allele count: 9
allele frequency: 1.186083289404323e-3
allele num: 7588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.502890173410405e-3
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0