1-18021629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021629
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021629
    reference: chr 1
allele count: 1
allele frequency: 8.45809016324114e-6
allele num: 118230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3068-24C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2294-24C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3450-24C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1088C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2504-24C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3185-24C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3068-24C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1875-24C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum

1-18021630-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021630
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021630
    reference: chr 1
allele count: 1
allele frequency: 8.454800635801008e-6
allele num: 118276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1875-23T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3068-23T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2294-23T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1089T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3068-23T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3450-23T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2504-23T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3185-23T>C
  variant of: http://identifiers.org/hgnc/25540
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

1-18021633-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021633
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021633
    reference: chr 1
allele count: 1
allele frequency: 8.442665856170744e-6
allele num: 118446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2504-20G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2294-20G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3068-20G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3185-20G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1875-20G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1092G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3068-20G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3450-20G>T
  variant of: http://identifiers.org/hgnc/25540
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-18021634-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021634
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021634
    reference: chr 1
allele count: 1
allele frequency: 8.439245868989148e-6
allele num: 118494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2504-19C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2294-19C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3068-19C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1093C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3068-19C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3450-19C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1875-19C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3185-19C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-18021635-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021635
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021635
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 118568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3068-18C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1094C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3450-18C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2504-18C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2294-18C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3068-18C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1875-18C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3185-18C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

1-18021636-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021636
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021636
    reference: chr 1
allele count: 25
allele frequency: 2.106078986386305e-4
allele num: 118704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2504-17G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3450-17G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1095G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3068-17G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3185-17G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1875-17G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2294-17G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3068-17G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40196
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 12394
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

1-18021636-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021636
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021636
    reference: chr 1
allele count: 1
allele frequency: 8.424315945545221e-6
allele num: 118704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1095G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1875-17G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3068-17G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2294-17G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2504-17G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3068-17G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3450-17G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3185-17G>T
  variant of: http://identifiers.org/hgnc/25540
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44536
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-18021650-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021650
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021650
    reference: chr 1
allele count: 1
allele frequency: 8.388558006878617e-6
allele num: 119210
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3185-3C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3450-3C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1875-3C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2294-3C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3068-3C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3068-3C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2504-3C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1109C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6949
  bin: 6.75e1
  variant carriers: 0
hgvs: c.3185-3C>T
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

1-18021653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021653
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021653
    reference: chr 1
allele count: 2
allele frequency: 1.676586469947188e-5
allele num: 119290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3068G>A
  hgvsp: ENSP00000364564.1:p.Gly1023Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1112G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1875G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2504G>A
  hgvsp: ENSP00000364557.3:p.Gly835Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3068G>A
  hgvsp: ENSP00000399401.1:p.Gly1023Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3185G>A
  hgvsp: ENSP00000355060.3:p.Gly1062Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2294G>A
  hgvsp: ENSP00000167825.4:p.Gly765Asp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3450G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly1062Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

1-18021660-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021660
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021660
    reference: chr 1
allele count: 1
allele frequency: 8.372965369415233e-6
allele num: 119432
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1119G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2511G>A
  hgvsp: ENST00000375408.3:c.2511G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3457G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3075G>A
  hgvsp: ENST00000375415.1:c.3075G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2301G>A
  hgvsp: ENST00000167825.4:c.2301G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1882G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3192G>A
  hgvsp: ENST00000361221.3:c.3192G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3075G>A
  hgvsp: ENST00000452522.1:c.3075G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys1064Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

1-18021668-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021668
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021668
    reference: chr 1
allele count: 27
allele frequency: 2.259376412110258e-4
allele num: 119502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2519G>T
  hgvsp: ENSP00000364557.3:p.Cys840Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3083G>T
  hgvsp: ENSP00000399401.1:p.Cys1028Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1127G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3083G>T
  hgvsp: ENSP00000364564.1:p.Cys1028Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3465G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1890G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2309G>T
  hgvsp: ENSP00000167825.4:p.Cys770Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3200G>T
  hgvsp: ENSP00000355060.3:p.Cys1067Phe
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12708
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 40432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys1067Phe
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-18021672-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021672
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021672
    reference: chr 1
allele count: 6
allele frequency: 5.021592849251783e-5
allele num: 119484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2523C>T
  hgvsp: ENST00000375408.3:c.2523C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3087C>T
  hgvsp: ENST00000375415.1:c.3087C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1131C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3087C>T
  hgvsp: ENST00000452522.1:c.3087C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3469C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3204C>T
  hgvsp: ENST00000361221.3:c.3204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1894C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2313C>T
  hgvsp: ENST00000167825.4:c.2313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val1068Val
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-18021700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021700
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021700
    reference: chr 1
allele count: 1
allele frequency: 8.422045546422314e-6
allele num: 118736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3115C>T
  hgvsp: ENSP00000399401.1:p.Leu1039Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1159C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3232C>T
  hgvsp: ENSP00000355060.3:p.Leu1078Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3497C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2341C>T
  hgvsp: ENSP00000167825.4:p.Leu781Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3115C>T
  hgvsp: ENSP00000364564.1:p.Leu1039Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2551C>T
  hgvsp: ENSP00000364557.3:p.Leu851Phe
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1922C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu1078Phe
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-18021706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021706
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021706
    reference: chr 1
allele count: 3
allele frequency: 2.536697558005818e-5
allele num: 118264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3503G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2347G>A
  hgvsp: ENSP00000167825.4:p.Val783Met
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3238G>A
  hgvsp: ENSP00000355060.3:p.Val1080Met
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1928G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2557G>A
  hgvsp: ENSP00000364557.3:p.Val853Met
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1165G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3121G>A
  hgvsp: ENSP00000399401.1:p.Val1041Met
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3121G>A
  hgvsp: ENSP00000364564.1:p.Val1041Met
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val1080Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

1-18021729-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021729
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021729
    reference: chr 1
allele count: 2
allele frequency: 1.728728001936176e-5
allele num: 115692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2370C>T
  hgvsp: ENST00000167825.4:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1188C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1951C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3144C>T
  hgvsp: ENST00000452522.1:c.3144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3526C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2580C>T
  hgvsp: ENST00000375408.3:c.2580C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3144C>T
  hgvsp: ENST00000375415.1:c.3144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3261C>T
  hgvsp: ENST00000361221.3:c.3261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37564
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile1087Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

1-18021730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021730
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021730
    reference: chr 1
allele count: 5
allele frequency: 4.32241778761368e-5
allele num: 115676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3145G>A
  hgvsp: ENSP00000364564.1:p.Val1049Ile
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1952G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3527G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3262G>A
  hgvsp: ENSP00000355060.3:p.Val1088Ile
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1189G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2581G>A
  hgvsp: ENSP00000364557.3:p.Val861Ile
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2371G>A
  hgvsp: ENSP00000167825.4:p.Val791Ile
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3145G>A
  hgvsp: ENSP00000399401.1:p.Val1049Ile
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6630
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val1088Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-18021733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021733
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021733
    reference: chr 1
allele count: 12
allele frequency: 1.040907671489539e-4
allele num: 115284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3530C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1955C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3148C>T
  hgvsp: ENST00000375415.1:c.3148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3148C>T
  hgvsp: ENST00000452522.1:c.3148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3265C>T
  hgvsp: ENST00000361221.3:c.3265C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2374C>T
  hgvsp: ENST00000167825.4:c.2374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2584C>T
  hgvsp: ENST00000375408.3:c.2584C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1192C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41005
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu1089Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-18021739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021739
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021739
    reference: chr 1
allele count: 3
allele frequency: 2.623157232044489e-5
allele num: 114366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3154C>T
  hgvsp: ENSP00000364564.1:p.Pro1052Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3271C>T
  hgvsp: ENSP00000355060.3:p.Pro1091Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1198C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2590C>T
  hgvsp: ENSP00000364557.3:p.Pro864Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3536C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3154C>T
  hgvsp: ENSP00000399401.1:p.Pro1052Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1961C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2380C>T
  hgvsp: ENSP00000167825.4:p.Pro794Ser
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro1091Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-18021741-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021741
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021741
    reference: chr 1
allele count: 2
allele frequency: 1.755957084408857e-5
allele num: 113898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3273C>T
  hgvsp: ENST00000361221.3:c.3273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1200C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2592C>T
  hgvsp: ENST00000375408.3:c.2592C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3156C>T
  hgvsp: ENST00000452522.1:c.3156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1963C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2382C>T
  hgvsp: ENST00000167825.4:c.2382C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3538C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3156C>T
  hgvsp: ENST00000375415.1:c.3156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro1091Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

1-18021746-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021746
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021746
    reference: chr 1
allele count: 1
allele frequency: 8.825969532753173e-6
allele num: 113302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2387C>G
  hgvsp: ENSP00000167825.4:p.Pro796Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1205C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2597C>G
  hgvsp: ENSP00000364557.3:p.Pro866Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3278C>G
  hgvsp: ENSP00000355060.3:p.Pro1093Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3543C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3161C>G
  hgvsp: ENSP00000399401.1:p.Pro1054Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3161C>G
  hgvsp: ENSP00000364564.1:p.Pro1054Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1968C>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2209
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro1093Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-18021748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021748
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021748
    reference: chr 1
allele count: 1
allele frequency: 8.858808313105721e-6
allele num: 112882
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3163C>T
  hgvsp: ENSP00000364564.1:p.Arg1055Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2599C>T
  hgvsp: ENSP00000364557.3:p.Arg867Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1207C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3280C>T
  hgvsp: ENSP00000355060.3:p.Arg1094Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3545C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3163C>T
  hgvsp: ENSP00000399401.1:p.Arg1055Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2389C>T
  hgvsp: ENSP00000167825.4:p.Arg797Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1970C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg1094Trp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

1-18021758-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021758
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021758
    reference: chr 1
allele count: 1
allele frequency: 8.960573476702509e-6
allele num: 111600
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3555G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1980G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2609G>C
  hgvsp: ENSP00000364557.3:p.Gly870Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3290G>C
  hgvsp: ENSP00000355060.3:p.Gly1097Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3173G>C
  hgvsp: ENSP00000399401.1:p.Gly1058Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2399G>C
  hgvsp: ENSP00000167825.4:p.Gly800Ala
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1217G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3173G>C
  hgvsp: ENSP00000364564.1:p.Gly1058Ala
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1097Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

1-18021758-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021758
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021758
    reference: chr 1
allele count: 12
allele frequency: 1.075268817204301e-4
allele num: 111600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2399G>T
  hgvsp: ENSP00000167825.4:p.Gly800Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3173G>T
  hgvsp: ENSP00000399401.1:p.Gly1058Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1980G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3290G>T
  hgvsp: ENSP00000355060.3:p.Gly1097Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3173G>T
  hgvsp: ENSP00000364564.1:p.Gly1058Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1217G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3555G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2609G>T
  hgvsp: ENSP00000364557.3:p.Gly870Val
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36579
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly1097Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS

1-18021765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021765
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021765
    reference: chr 1
allele count: 2
allele frequency: 1.803393987484446e-5
allele num: 110902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1987C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3297C>T
  hgvsp: ENST00000361221.3:c.3297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2616C>T
  hgvsp: ENST00000375408.3:c.2616C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3180C>T
  hgvsp: ENST00000375415.1:c.3180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1224C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2406C>T
  hgvsp: ENST00000167825.4:c.2406C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3562C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3180C>T
  hgvsp: ENST00000452522.1:c.3180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1099Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

1-18021768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021768
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021768
    reference: chr 1
allele count: 3
allele frequency: 2.712673611111111e-5
allele num: 110592
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3300G>A
  hgvsp: ENST00000361221.3:c.3300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2409G>A
  hgvsp: ENST00000167825.4:c.2409G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3565G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1990G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2619G>A
  hgvsp: ENST00000375408.3:c.2619G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3183G>A
  hgvsp: ENST00000375415.1:c.3183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1227G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3183G>A
  hgvsp: ENST00000452522.1:c.3183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys1100Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-18021774-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021774
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021774
    reference: chr 1
allele count: 1
allele frequency: 9.068978651624254e-6
allele num: 110266
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3306A>C
  hgvsp: ENST00000361221.3:c.3306A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3189A>C
  hgvsp: ENST00000452522.1:c.3189A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1996A>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3571A>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2415A>C
  hgvsp: ENST00000167825.4:c.2415A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3189A>C
  hgvsp: ENST00000375415.1:c.3189A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2625A>C
  hgvsp: ENST00000375408.3:c.2625A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1233A>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 7.5e0
  variant carriers: 0
hgvs: c.3306A>C
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-18021800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021800
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021800
    reference: chr 1
allele count: 1
allele frequency: 9.213363061784812e-6
allele num: 108538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1997+25G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2626+25G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3572+25G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1234+25G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3307+25G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3190+25G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2416+25G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3190+25G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-18021800-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021800
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021800
    reference: chr 1
allele count: 1
allele frequency: 9.213363061784812e-6
allele num: 108538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3572+25G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3307+25G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3190+25G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1997+25G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1234+25G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3190+25G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2416+25G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2626+25G>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34520
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6319
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3660
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-18021801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021801
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021801
    reference: chr 1
allele count: 1
allele frequency: 9.217609320846545e-6
allele num: 108488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1997+26C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3572+26C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3190+26C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2626+26C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3307+26C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1234+26C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2416+26C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3190+26C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-18021811-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021811
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021811
    reference: chr 1
allele count: 1
allele frequency: 9.241119284367723e-6
allele num: 108212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3190+36G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2416+36G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3307+36G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2626+36G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3572+36G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1997+36G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3190+36G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1234+36G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35634
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

1-18021811-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021811
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021811
    reference: chr 1
allele count: 1
allele frequency: 9.241119284367723e-6
allele num: 108212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3190+36G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1997+36G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1234+36G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2416+36G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3307+36G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3572+36G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3190+36G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2626+36G>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32970
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35634
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6233
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

1-18021812-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021812
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021812
    reference: chr 1
allele count: 1
allele frequency: 9.24402373865296e-6
allele num: 108178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1234+37G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3307+37G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2626+37G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2416+37G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1997+37G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3190+37G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3572+37G>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3190+37G>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

1-18021822-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021822
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021822
    reference: chr 1
allele count: 2
allele frequency: 1.852366398073539e-5
allele num: 107970
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3307+47A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2626+47A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3572+47A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3190+47A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1997+47A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1234+47A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3190+47A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2416+47A>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

1-18021823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021823
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021823
    reference: chr 1
allele count: 2
allele frequency: 1.853327649795207e-5
allele num: 107914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1997+48G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2416+48G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3572+48G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3190+48G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1234+48G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3307+48G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2626+48G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3190+48G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5966
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-18021824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18021824
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18021824
    reference: chr 1
allele count: 2
allele frequency: 1.853465052916427e-5
allele num: 107906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1997+49G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3307+49G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3190+49G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2626+49G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3190+49G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1234+49G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2416+49G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3572+49G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-18023298-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023298
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023298
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 105240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-45C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-45C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-45C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-45C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-45C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-45C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-45C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-45C>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5348
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-18023298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023298
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023298
    reference: chr 1
allele count: 147
allele frequency: 1.396807297605473e-3
allele num: 105240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-45C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-45C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-45C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-45C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-45C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-45C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-45C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-45C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8524
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16798
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 2.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6766
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3314
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2758
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5348
  bin: 9.75e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

1-18023299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023299
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023299
    reference: chr 1
allele count: 1
allele frequency: 9.505522708693752e-6
allele num: 105202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-44G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-44G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-44G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-44G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-44G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-44G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-44G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-44G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5240
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5908
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3458
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

1-18023299-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023299
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023299
    reference: chr 1
allele count: 1
allele frequency: 9.505522708693752e-6
allele num: 105202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-44G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-44G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-44G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-44G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-44G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-44G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-44G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-44G>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2724
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

1-18023301-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023301
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023301
    reference: chr 1
allele count: 1
allele frequency: 9.470593806231651e-6
allele num: 105590
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-42T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-42T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-42T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-42T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-42T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-42T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-42T>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-42T>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-18023312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023312
    reference: chr 1
allele count: 1
allele frequency: 9.429692214846108e-6
allele num: 106048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-31G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-31G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-31G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-31G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-31G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-31G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-31G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-31G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20635
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3927
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-18023315-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023315
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023315
    reference: chr 1
allele count: 1
allele frequency: 9.407337723424271e-6
allele num: 106300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-28C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-28C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-28C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-28C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-28C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-28C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-28C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-28C>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-18023326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023326
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023326
    reference: chr 1
allele count: 3
allele frequency: 2.801957634400568e-5
allele num: 107068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-17C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-17C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-17C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-17C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-17C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-17C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-17C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-17C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25049
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5423
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7188
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/1-18023328-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023328
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023328
    reference: chr 1
allele count: 1
allele frequency: 9.31601796128263e-6
allele num: 107342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-15C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-15C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-15C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-15C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-15C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-15C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-15C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-15C>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23416
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-18023328-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023328
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023328
    reference: chr 1
allele count: 1
allele frequency: 9.31601796128263e-6
allele num: 107342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-15C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-15C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-15C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-15C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-15C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-15C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-15C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-15C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13244
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-18023329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023329
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023329
    reference: chr 1
allele count: 1
allele frequency: 9.305441822377727e-6
allele num: 107464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-14C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-14C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-14C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-14C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-14C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-14C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-14C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-14C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23589
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5460
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-18023332-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023332
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023332
    reference: chr 1
allele count: 1
allele frequency: 9.280397943463817e-6
allele num: 107754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-11A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-11A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-11A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-11A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-11A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-11A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-11A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-11A>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25410
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23731
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-18023335-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023335
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023335
    reference: chr 1
allele count: 1
allele frequency: 9.265264523302141e-6
allele num: 107930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-8T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-8T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-8T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-8T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-8T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-8T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-8T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-8T>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23733
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5482
  bin: 9.75e1
  variant carriers: 1
hgvs: c.3308-8T>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

1-18023336-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023336
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023336
    reference: chr 1
allele count: 1
allele frequency: 9.260459689218973e-6
allele num: 107986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-7T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-7T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-7T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-7T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-7T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-7T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-7T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-7T>C
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7149
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 8.75e1
  variant carriers: 0
hgvs: c.3308-7T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

1-18023338-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023338
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023338
    reference: chr 1
allele count: 1
allele frequency: 9.246930019233614e-6
allele num: 108144
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2417-5T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3308-5T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.1998-5T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3191-5T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3191-5T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2627-5T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3573-5T>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1235-5T>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25562
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5490
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7537
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
hgvs: c.3308-5T>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

1-18023347-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023347
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023347
    reference: chr 1
allele count: 6
allele frequency: 5.513388344697039e-5
allele num: 108826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3577A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2002A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3195A>G
  hgvsp: ENST00000452522.1:c.3195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2421A>G
  hgvsp: ENST00000167825.4:c.2421A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1239A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3312A>G
  hgvsp: ENST00000361221.3:c.3312A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3195A>G
  hgvsp: ENST00000375415.1:c.3195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2631A>G
  hgvsp: ENST00000375408.3:c.2631A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14150
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23849
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys1104Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

1-18023351-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023351
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023351
    reference: chr 1
allele count: 7
allele frequency: 6.411548114088919e-5
allele num: 109178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2425A>G
  hgvsp: ENSP00000167825.4:p.Met809Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2635A>G
  hgvsp: ENSP00000364557.3:p.Met879Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1243A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3199A>G
  hgvsp: ENSP00000364564.1:p.Met1067Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3581A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3316A>G
  hgvsp: ENSP00000355060.3:p.Met1106Val
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2006A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3199A>G
  hgvsp: ENSP00000399401.1:p.Met1067Val
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3999
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5566
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7704
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met1106Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-18023352-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023352
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023352
    reference: chr 1
allele count: 6
allele frequency: 5.49219193380078e-5
allele num: 109246
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3317T>C
  hgvsp: ENSP00000355060.3:p.Met1106Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2007T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3582T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3200T>C
  hgvsp: ENSP00000364564.1:p.Met1067Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1244T>C
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3200T>C
  hgvsp: ENSP00000399401.1:p.Met1067Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2636T>C
  hgvsp: ENSP00000364557.3:p.Met879Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2426T>C
  hgvsp: ENSP00000167825.4:p.Met809Thr
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4005
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1106Thr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-18023362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023362
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023362
    reference: chr 1
allele count: 1
allele frequency: 9.093554488578495e-6
allele num: 109968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3210C>T
  hgvsp: ENST00000375415.1:c.3210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2646C>T
  hgvsp: ENST00000375408.3:c.2646C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3592C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3327C>T
  hgvsp: ENST00000361221.3:c.3327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3210C>T
  hgvsp: ENST00000452522.1:c.3210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2017C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2436C>T
  hgvsp: ENST00000167825.4:c.2436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1254C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu1109Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

1-18023364-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023364
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023364
    reference: chr 1
allele count: 1
allele frequency: 9.077045966160773e-6
allele num: 110168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3212A>G
  hgvsp: ENSP00000364564.1:p.Asn1071Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3212A>G
  hgvsp: ENSP00000399401.1:p.Asn1071Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2438A>G
  hgvsp: ENSP00000167825.4:p.Asn813Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2019A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3329A>G
  hgvsp: ENSP00000355060.3:p.Asn1110Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2648A>G
  hgvsp: ENSP00000364557.3:p.Asn883Ser
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1256A>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3594A>G
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7799
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23384
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn1110Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-18023365-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023365
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023365
    reference: chr 1
allele count: 1
allele frequency: 8.669568082118148e-6
allele num: 115346
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3330C>G
  hgvsp: ENSP00000355060.3:p.Asn1110Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3213C>G
  hgvsp: ENSP00000399401.1:p.Asn1071Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1257C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3213C>G
  hgvsp: ENSP00000364564.1:p.Asn1071Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2439C>G
  hgvsp: ENSP00000167825.4:p.Asn813Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3595C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2020C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2649C>G
  hgvsp: ENSP00000364557.3:p.Asn883Lys
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn1110Lys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

1-18023365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023365
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023365
    reference: chr 1
allele count: 94227
allele frequency: 8.169073916737468e-1
allele num: 115346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3213C>T
  hgvsp: ENST00000452522.1:c.3213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2439C>T
  hgvsp: ENST00000167825.4:c.2439C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2649C>T
  hgvsp: ENST00000375408.3:c.2649C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3330C>T
  hgvsp: ENST00000361221.3:c.3330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3213C>T
  hgvsp: ENST00000375415.1:c.3213C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2020C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3595C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1257C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 3.75e1
  variant carriers: 6576
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 4.75e1
  variant carriers: 6508
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 1.25e1
  variant carriers: 2360
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 3.25e1
  variant carriers: 5120
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 7.25e1
  variant carriers: 1514
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.5e0
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 9.75e1
  variant carriers: 1532
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 6.25e1
  variant carriers: 3111
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 7.5e0
  variant carriers: 2072
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 5.75e1
  variant carriers: 4402
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 2.25e1
  variant carriers: 2203
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 8.75e1
  variant carriers: 369
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 5.25e1
  variant carriers: 5854
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 1.75e1
  variant carriers: 1612
genotype depth: GenotypeDepth
  all individuals: 6950
  bin: 4.25e1
  variant carriers: 6928
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 8.25e1
  variant carriers: 591
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 7.75e1
  variant carriers: 918
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 6.75e1
  variant carriers: 2144
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 9.25e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 2.75e1
  variant carriers: 3560
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.75e1
  variant carriers: 1050
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 373
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 3.25e1
  variant carriers: 818
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 364
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.75e1
  variant carriers: 447
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 1.75e1
  variant carriers: 573
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 7.25e1
  variant carriers: 567
hgvs: p.Asn1110Asn
num of homozygotes: 38740
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-18023366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023366
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023366
    reference: chr 1
allele count: 1
allele frequency: 8.712774670221478e-6
allele num: 114774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1258G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3331G>A
  hgvsp: ENSP00000355060.3:p.Gly1111Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3214G>A
  hgvsp: ENSP00000399401.1:p.Gly1072Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2650G>A
  hgvsp: ENSP00000364557.3:p.Gly884Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3214G>A
  hgvsp: ENSP00000364564.1:p.Gly1072Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2021G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2440G>A
  hgvsp: ENSP00000167825.4:p.Gly814Arg
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3596G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly1111Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

1-18023368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023368
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023368
    reference: chr 1
allele count: 1
allele frequency: 8.712622847982157e-6
allele num: 114776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3216G>A
  hgvsp: ENST00000375415.1:c.3216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1260G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2652G>A
  hgvsp: ENST00000375408.3:c.2652G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3216G>A
  hgvsp: ENST00000452522.1:c.3216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2442G>A
  hgvsp: ENST00000167825.4:c.2442G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3333G>A
  hgvsp: ENST00000361221.3:c.3333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2023G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3598G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9001
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly1111Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

1-18023384-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023384
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023384
    reference: chr 1
allele count: 5
allele frequency: 4.353883664228492e-5
allele num: 114840
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3614G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3349G>A
  hgvsp: ENSP00000355060.3:p.Ala1117Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2458G>A
  hgvsp: ENSP00000167825.4:p.Ala820Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2668G>A
  hgvsp: ENSP00000364557.3:p.Ala890Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2039G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1276G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3232G>A
  hgvsp: ENSP00000364564.1:p.Ala1078Thr
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3232G>A
  hgvsp: ENSP00000399401.1:p.Ala1078Thr
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12054
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala1117Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-18023389-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023389
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023389
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 114836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1281C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3619C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3354C>A
  hgvsp: ENSP00000355060.3:p.Phe1118Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3237C>A
  hgvsp: ENSP00000364564.1:p.Phe1079Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2463C>A
  hgvsp: ENSP00000167825.4:p.Phe821Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3237C>A
  hgvsp: ENSP00000399401.1:p.Phe1079Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2673C>A
  hgvsp: ENSP00000364557.3:p.Phe891Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2044C>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2768
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33965
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe1118Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP

1-18023389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023389
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023389
    reference: chr 1
allele count: 2
allele frequency: 1.741614127973806e-5
allele num: 114836
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3354C>T
  hgvsp: ENST00000361221.3:c.3354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1281C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3619C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2673C>T
  hgvsp: ENST00000375408.3:c.2673C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3237C>T
  hgvsp: ENST00000375415.1:c.3237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3237C>T
  hgvsp: ENST00000452522.1:c.3237C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2463C>T
  hgvsp: ENST00000167825.4:c.2463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2044C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe1118Phe
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-18023403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023403
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023403
    reference: chr 1
allele count: 125
allele frequency: 1.091550525690733e-3
allele num: 114516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3251C>T
  hgvsp: ENSP00000399401.1:p.Thr1084Ile
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2477C>T
  hgvsp: ENSP00000167825.4:p.Thr826Ile
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3633C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2687C>T
  hgvsp: ENSP00000364557.3:p.Thr896Ile
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3368C>T
  hgvsp: ENSP00000355060.3:p.Thr1123Ile
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3251C>T
  hgvsp: ENSP00000364564.1:p.Thr1084Ile
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2058C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1295C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13456
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 26289
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr1123Ile
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-18023422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023422
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023422
    reference: chr 1
allele count: 1
allele frequency: 8.625150940141453e-6
allele num: 115940
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3652C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2496C>T
  hgvsp: ENST00000167825.4:c.2496C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3270C>T
  hgvsp: ENST00000452522.1:c.3270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2077C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2706C>T
  hgvsp: ENST00000375408.3:c.2706C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3387C>T
  hgvsp: ENST00000361221.3:c.3387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1314C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3270C>T
  hgvsp: ENST00000375415.1:c.3270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp1129Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

1-18023425-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023425
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023425
    reference: chr 1
allele count: 1
allele frequency: 8.615342201392239e-6
allele num: 116072
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3390C>G
  hgvsp: ENSP00000355060.3:p.Ile1130Met
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1317C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2080C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3273C>G
  hgvsp: ENSP00000399401.1:p.Ile1091Met
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2499C>G
  hgvsp: ENSP00000167825.4:p.Ile833Met
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3273C>G
  hgvsp: ENSP00000364564.1:p.Ile1091Met
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3655C>G
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2709C>G
  hgvsp: ENSP00000364557.3:p.Ile903Met
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15606
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile1130Met
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-18023429-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023429
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023429
    reference: chr 1
allele count: 1
allele frequency: 8.616529951058109e-6
allele num: 116056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2713C>A
  hgvsp: ENST00000375408.3:c.2713C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1321C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2084C>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2503C>A
  hgvsp: ENST00000167825.4:c.2503C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3277C>A
  hgvsp: ENST00000452522.1:c.3277C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3277C>A
  hgvsp: ENST00000375415.1:c.3277C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3394C>A
  hgvsp: ENST00000361221.3:c.3394C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3659C>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34583
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1132Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

1-18023430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023430
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023430
    reference: chr 1
allele count: 2
allele frequency: 1.725327812284334e-5
allele num: 115920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2085G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3278G>A
  hgvsp: ENSP00000364564.1:p.Arg1093Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3278G>A
  hgvsp: ENSP00000399401.1:p.Arg1093Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1322G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2504G>A
  hgvsp: ENSP00000167825.4:p.Arg835Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3660G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3395G>A
  hgvsp: ENSP00000355060.3:p.Arg1132Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2714G>A
  hgvsp: ENSP00000364557.3:p.Arg905Gln
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24705
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1132Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-18023444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023444
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023444
    reference: chr 1
allele count: 3
allele frequency: 2.596368545860523e-5
allele num: 115546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3292G>A
  hgvsp: ENSP00000399401.1:p.Glu1098Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2099G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1336G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3292G>A
  hgvsp: ENSP00000364564.1:p.Glu1098Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2728G>A
  hgvsp: ENSP00000364557.3:p.Glu910Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3674G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3409G>A
  hgvsp: ENSP00000355060.3:p.Glu1137Lys
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2518G>A
  hgvsp: ENSP00000167825.4:p.Glu840Lys
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu1137Lys
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-18023459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023459
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023459
    reference: chr 1
allele count: 2
allele frequency: 1.75617294791191e-5
allele num: 113884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3307C>T
  hgvsp: ENSP00000364564.1:p.Arg1103Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3307C>T
  hgvsp: ENSP00000399401.1:p.Arg1103Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3424C>T
  hgvsp: ENSP00000355060.3:p.Arg1142Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2743C>T
  hgvsp: ENSP00000364557.3:p.Arg915Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3689C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2114C>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2533C>T
  hgvsp: ENSP00000167825.4:p.Arg845Trp
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1351C>T
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15685
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6237
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30026
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg1142Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

1-18023460-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023460
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023460
    reference: chr 1
allele count: 5
allele frequency: 4.395527111611224e-5
allele num: 113752
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2744G>A
  hgvsp: ENSP00000364557.3:p.Arg915Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3308G>A
  hgvsp: ENSP00000364564.1:p.Arg1103Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3425G>A
  hgvsp: ENSP00000355060.3:p.Arg1142Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2534G>A
  hgvsp: ENSP00000167825.4:p.Arg845Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1352G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3308G>A
  hgvsp: ENSP00000399401.1:p.Arg1103Gln
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2115G>A
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3690G>A
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15651
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6684
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6020
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg1142Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

1-18023460-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 18023460
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 18023460
    reference: chr 1
allele count: 1
allele frequency: 8.791054223222449e-6
allele num: 113752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364564
  ensembl transcript: ENST00000375415
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375415.1:c.3308G>T
  hgvsp: ENSP00000364564.1:p.Arg1103Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000355060
  ensembl transcript: ENST00000361221
  gene symbol: ARHGEF10L
  hgvsc: ENST00000361221.3:c.3425G>T
  hgvsp: ENSP00000355060.3:p.Arg1142Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000475356
  gene symbol: ARHGEF10L
  hgvsc: ENST00000475356.1:n.2115G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000469726
  gene symbol: ARHGEF10L
  hgvsc: ENST00000469726.1:n.3690G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000399401
  ensembl transcript: ENST00000452522
  gene symbol: ARHGEF10L
  hgvsc: ENST00000452522.1:c.3308G>T
  hgvsp: ENSP00000399401.1:p.Arg1103Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000074964
  ensembl transcript: ENST00000495593
  gene symbol: ARHGEF10L
  hgvsc: ENST00000495593.1:n.1352G>T
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000167825
  ensembl transcript: ENST00000167825
  gene symbol: ARHGEF10L
  hgvsc: ENST00000167825.4:c.2534G>T
  hgvsp: ENSP00000167825.4:p.Arg845Leu
  variant of: http://identifiers.org/hgnc/25540
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074964
  ensembl protein: ENSP00000364557
  ensembl transcript: ENST00000375408
  gene symbol: ARHGEF10L
  hgvsc: ENST00000375408.3:c.2744G>T
  hgvsp: ENSP00000364557.3:p.Arg915Leu
  variant of: http://identifiers.org/hgnc/25540
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20263
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg1142Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 43870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550435672423951e-5
allele num: 64498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.909e1

DP
type: SiteQuality
SIO_000300: 1.419567e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

QD
type: SiteQuality
SIO_000300: 1.132e1

FS
type: SiteQuality
SIO_000300: 2.547e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.468e0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6857
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549666821633349e-5
allele num: 64530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

FS
type: SiteQuality
SIO_000300: 4.057e0

DP
type: SiteQuality
SIO_000300: 1.420296e6

MQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6871
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.422967e6

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.349e0

FS
type: SiteQuality
SIO_000300: 8.832000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-1

QD
type: SiteQuality
SIO_000300: 7.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.585e0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.172e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.009e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

DP
type: SiteQuality
SIO_000300: 1.423613e6

QD
type: SiteQuality
SIO_000300: 1.064e1

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44407
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64704
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.251e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 1.424565e6

FS
type: SiteQuality
SIO_000300: 1.741e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44536
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 6879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.981375074301565e-4
allele num: 10094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.414166256763404e-3
allele num: 16264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 1.428708e6

QD
type: SiteQuality
SIO_000300: 1.135e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeQuality
all individuals: 2254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64794
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.135e1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.428708e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
all individuals: 447
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.5e0
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GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
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variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65066
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 4.317e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.012e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.876e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 1.433052e6

GenotypeQuality
all individuals: 887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 44983
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.224289911851126e-4
allele num: 16336
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 1.436e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.203e0

DP
type: SiteQuality
SIO_000300: 1.434071e6

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 1.199e1

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 91
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GenotypeQuality
all individuals: 1270
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 416
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variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.112469437652811e-5
allele num: 16360
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.096e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.241e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 2.958e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

DP
type: SiteQuality
SIO_000300: 1.435376e6

QD
type: SiteQuality
SIO_000300: 8.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
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GenotypeQuality
all individuals: 493
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variant carriers: 27

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 416
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variant carriers: 0

GenotypeQuality
all individuals: 6954
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597852441981296e-4
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.053588891061999e-3
allele num: 10226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.117704637220115e-5
allele num: 16346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531956614988664e-5
allele num: 65276
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.011e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 1.787e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

DP
type: SiteQuality
SIO_000300: 1.438028e6

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 803
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
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variant carriers: 1

GenotypeQuality
all individuals: 53
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variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 1269
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variant carriers: 0

GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 6957
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.595869844965991e-5
allele num: 65276
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.838010047788261e-4
allele num: 16322
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: -3.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 2.812e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

DP
type: SiteQuality
SIO_000300: 1.436093e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.09e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

GenotypeQuality
all individuals: 2245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 202
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variant carriers: 0

GenotypeQuality
all individuals: 446
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GenotypeQuality
all individuals: 6852
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 418
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 474
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variant carriers: 1

GenotypeQuality
all individuals: 44068
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53666482266888e-5
allele num: 65076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.309e0

MQRankSum
type: SiteQuality
SIO_000300: -1.571e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.096e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.904e-1

DP
type: SiteQuality
SIO_000300: 1.424284e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 1.475e1

GenotypeQuality
all individuals: 236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
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GenotypeQuality
all individuals: 477
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variant carriers: 3

GenotypeQuality
all individuals: 2235
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GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 6803
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GenotypeQuality
all individuals: 2216
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variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.75e1
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GenotypeQuality
all individuals: 444
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GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 43442
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variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.619079879288046e-5
allele num: 64948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.415362e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

FS
type: SiteQuality
SIO_000300: 3.148e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.641e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.356e1

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 510
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GenotypeQuality
all individuals: 435
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 6630
bin: 6.75e1
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GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.307804735457468e-5
allele num: 13684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554533018281308e-5
allele num: 64328
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.379759e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 3.05e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 1257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
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variant carriers: 1

GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 417
bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6588
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African
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allele count: 2
allele frequency: 1.969667126255663e-4
allele num: 10154
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.109259374417014e-5
allele num: 64324
num of homozygotes: 0

East Asian
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allele frequency: 1.16198001394376e-4
allele num: 8606
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South Asian
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Other
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allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.931e0

BaseQRankSum
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QD
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MQ
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13408
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64228
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 12
allele frequency: 1.394700139470014e-3
allele num: 8604
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Other
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QD
type: SiteQuality
SIO_000300: 1.372e1

DP
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 5.71e-1

ReadPosRankSum
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MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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SIO_000300: -2.678e0

InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
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European (Finnish)
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allele count: 1
allele frequency: 1.522997258604935e-4
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.124414172342686e-5
allele num: 64012
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11482
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

QD
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
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SIO_000300: 1.367939e6

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
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SIO_000300: -3.226e0

ReadPosRankSum
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SIO_000300: 3.97e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele count: 1
allele frequency: 8.025682182985554e-5
allele num: 12460
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.365713e6

FS
type: SiteQuality
SIO_000300: 1.836e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
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SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 1.454e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568824323052305e-5
allele num: 63742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
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MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 2.204e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.87e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

DP
type: SiteQuality
SIO_000300: 1.360147e6

BaseQRankSum
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SIO_000300: -2.303e0

MQRankSum
type: SiteQuality
SIO_000300: -1.076e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570845114671693e-5
allele num: 63660
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 804
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African
type: Population
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BaseQRankSum
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SIO_000300: 2.62e0

InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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African
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South Asian
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allele frequency: 9.179364787956673e-5
allele num: 10894
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63342
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.153e0

InbreedingCoeff
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DP
type: SiteQuality
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ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 12
allele frequency: 1.894477597802406e-4
allele num: 63342
num of homozygotes: 0

QD
type: SiteQuality
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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African
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.746114894360049e-4
allele num: 11454
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2171
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.756770469968922e-5
allele num: 63068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

DP
type: SiteQuality
SIO_000300: 1.33832e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.664e0

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588209135378947e-5
allele num: 62964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.672e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 5.747e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.333995e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.009896990506968e-4
allele num: 9902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.977e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.108e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.116e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 6.75e0

DP
type: SiteQuality
SIO_000300: 1.305093e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.009896990506968e-4
allele num: 9902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.977e0

VQSLOD
type: SiteQuality
SIO_000300: -4.116e-1

DP
type: SiteQuality
SIO_000300: 1.305093e6

QD
type: SiteQuality
SIO_000300: 6.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 584
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GenotypeQuality
all individuals: 2098
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 206
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GenotypeQuality
all individuals: 474
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variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.093852548676438e-4
allele num: 9142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.30574e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.111e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.82e1

QD
type: SiteQuality
SIO_000300: 1.326e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3670
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1923
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6233
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variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62296
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.105705440070765e-4
allele num: 9044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.292809e6

QD
type: SiteQuality
SIO_000300: 8.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 8.01e0

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.292809e6

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2075
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.60570345868525e-5
allele num: 62278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
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QD
type: SiteQuality
SIO_000300: 1.316e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 3.632e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

DP
type: SiteQuality
SIO_000300: 1.291598e6

MQ
type: SiteQuality
SIO_000300: 5.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.76731544800982e-5
allele num: 11406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.60818243221511e-5
allele num: 62182
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.286e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

FS
type: SiteQuality
SIO_000300: 1.162e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.285129e6

GenotypeQuality
all individuals: 2341
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.217917363882096e-5
allele num: 62152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

DP
type: SiteQuality
SIO_000300: 1.285952e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.08e-1

QD
type: SiteQuality
SIO_000300: 1.04e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 481
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.217503217503217e-5
allele num: 62160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

FS
type: SiteQuality
SIO_000300: 1.045e0

QD
type: SiteQuality
SIO_000300: 1.129e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

DP
type: SiteQuality
SIO_000300: 1.286405e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60812
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 1.649e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.380332e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.891e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

QD
type: SiteQuality
SIO_000300: 1.371e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.200768491834774e-4
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 138
allele frequency: 1.430941518042306e-2
allele num: 9644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8264
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.165890361877463e-4
allele num: 11164
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 1.649e0

DP
type: SiteQuality
SIO_000300: 1.380332e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.891e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
all individuals: 2567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1958
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GenotypeQuality
all individuals: 765
bin: 1.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.036914143508917e-4
allele num: 9644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.665e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

DP
type: SiteQuality
SIO_000300: 1.391389e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.201634222542658e-4
allele num: 8322
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.665e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

DP
type: SiteQuality
SIO_000300: 1.391389e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.639559286463799e-5
allele num: 60992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.313e1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.23e-2

FS
type: SiteQuality
SIO_000300: 3.928e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.402603e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1723
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.633026324384349e-5
allele num: 61236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.462826e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

FS
type: SiteQuality
SIO_000300: 6.944e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.694e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1373
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629142093773419e-5
allele num: 61382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.418e1

VQSLOD
type: SiteQuality
SIO_000300: -2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

MQRankSum
type: SiteQuality
SIO_000300: -1.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.478418e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.239915762190183e-5
allele num: 61730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.855827134254339e-5
allele num: 11292
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.516807e6

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

BaseQRankSum
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SIO_000300: -2.185e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 3.209e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.073e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8722
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616448984870038e-5
allele num: 61864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.927e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

FS
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.527795e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.86e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.01667344448963e-4
allele num: 9836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.927e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.527795e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6149349181228e-5
allele num: 61922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.887e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

FS
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.705e0

DP
type: SiteQuality
SIO_000300: 1.532143e6

QD
type: SiteQuality
SIO_000300: 2.229e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7423
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.182312603452353e-4
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.056e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.419999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.103e-1

DP
type: SiteQuality
SIO_000300: 1.541674e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 8.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609528408176404e-5
allele num: 62130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.164e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 2.924e0

DP
type: SiteQuality
SIO_000300: 1.545972e6

QD
type: SiteQuality
SIO_000300: 1.232e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.608855138683313e-5
allele num: 62156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8888
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.415e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.675e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e0

DP
type: SiteQuality
SIO_000300: 1.547136e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.607200257152041e-5
allele num: 62220
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.24e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.05e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.882e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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Latino
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allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.602150881797523e-5
allele num: 62486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
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ReadPosRankSum
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QD
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.568251e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 1968
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variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.147900930967855e-4
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.992e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 1.574481e6

QD
type: SiteQuality
SIO_000300: 1.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

GenotypeQuality
all individuals: 490
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.582521480818986e-5
allele num: 62614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: 8.43e-1

FS
type: SiteQuality
SIO_000300: 2.387e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

QD
type: SiteQuality
SIO_000300: 1.341e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.575639e6

GenotypeQuality
all individuals: 23550
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 177
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GenotypeQuality
all individuals: 1996
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.013376570733685e-4
allele num: 9868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 1.588783e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.785e0

VQSLOD
type: SiteQuality
SIO_000300: 5.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.33e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.84e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 512
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GenotypeQuality
all individuals: 3663
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590128482381376e-5
allele num: 62888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.591014e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.731e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

MQ
type: SiteQuality
SIO_000300: 5.665e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 2.694e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.441e1

GenotypeQuality
all individuals: 374
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 790
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1562
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GenotypeQuality
all individuals: 831
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.784735812133073e-5
allele num: 10220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.578e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

DP
type: SiteQuality
SIO_000300: 2.683336e6

FS
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

GenotypeQuality
all individuals: 219
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 210
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variant carriers: 201

GenotypeQuality
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variant carriers: 45586

GenotypeQuality
all individuals: 790
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variant carriers: 783

GenotypeQuality
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variant carriers: 163

GenotypeQuality
all individuals: 860
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variant carriers: 772

GenotypeQuality
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variant carriers: 793

GenotypeQuality
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variant carriers: 553

GenotypeQuality
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variant carriers: 1550

GenotypeQuality
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variant carriers: 603

GenotypeQuality
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variant carriers: 1274

GenotypeQuality
all individuals: 2205
bin: 6.25e1
variant carriers: 678

GenotypeQuality
all individuals: 831
bin: 8.75e1
variant carriers: 817

South Asian
type: Population
allele count: 11864
allele frequency: 8.945860352887951e-1
allele num: 13262
num of homozygotes: 5297

European (Non-Finnish)
type: Population
allele count: 52776
allele frequency: 8.201908432536599e-1
allele num: 64346
num of homozygotes: 21638

East Asian
type: Population
allele count: 7016
allele frequency: 8.160037217957664e-1
allele num: 8598
num of homozygotes: 2857

African
type: Population
allele count: 6406
allele frequency: 6.268101761252446e-1
allele num: 10220
num of homozygotes: 2016

European (Finnish)
type: Population
allele count: 5131
allele frequency: 7.809741248097413e-1
allele num: 6570
num of homozygotes: 2006

Latino
type: Population
allele count: 10316
allele frequency: 8.968874978264649e-1
allele num: 11502
num of homozygotes: 4620

Other
type: Population
allele count: 718
allele frequency: 8.466981132075472e-1
allele num: 848
num of homozygotes: 306

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

FS
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.55e-1

DP
type: SiteQuality
SIO_000300: 2.683336e6

QD
type: SiteQuality
SIO_000300: 2.578e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1542
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variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561475281846288e-5
allele num: 64042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

DP
type: SiteQuality
SIO_000300: 1.619191e6

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.72e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1085
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1514
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.5e-2

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.946e0

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-2

DP
type: SiteQuality
SIO_000300: 1.618212e6

GenotypeQuality
all individuals: 948
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 336
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 816
bin: 3.75e1
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GenotypeQuality
all individuals: 527
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.729050279329609e-5
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.01340967304505e-4
allele num: 13274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64056
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.609891e6

FS
type: SiteQuality
SIO_000300: 2.187e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.372e0

QD
type: SiteQuality
SIO_000300: 9.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.609003e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.736676568233443e-5
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64046
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.609003e6

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 126

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.512469265893923e-4
allele num: 11388
num of homozygotes: 0

African
type: Population
allele count: 121
allele frequency: 1.215347529128164e-2
allele num: 9956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13762
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.169e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

DP
type: SiteQuality
SIO_000300: 1.592453e6

FS
type: SiteQuality
SIO_000300: 5.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.206e0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9944
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.45e-1

DP
type: SiteQuality
SIO_000300: 1.580084e6

VQSLOD
type: SiteQuality
SIO_000300: 3.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.172e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562988433885589e-5
allele num: 63980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.199e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 1.576778e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.582e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566366968453369e-5
allele num: 63842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.570547e6

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.771165426850868e-4
allele num: 11292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63726
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.559844e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.735446394746812e-5
allele num: 63352
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.525304e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2210
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 820
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.022013713460844e-5
allele num: 11084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.046682018002931e-4
allele num: 9554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62430
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

QD
type: SiteQuality
SIO_000300: 7.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

FS
type: SiteQuality
SIO_000300: 3.608e0

DP
type: SiteQuality
SIO_000300: 1.462844e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

GenotypeQuality
all individuals: 751
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.912045889101338e-4
allele num: 15690
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.035056017347308e-5
allele num: 11068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.603540617683846e-5
allele num: 62362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.45212e6

QD
type: SiteQuality
SIO_000300: 1.116e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

FS
type: SiteQuality
SIO_000300: 1.1706e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.029e0

VQSLOD
type: SiteQuality
SIO_000300: -4.785e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3