1-100366394-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366394
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366394
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3565G>C
  hgvsp: ENSP00000294724.4:p.Ala1189Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3517G>C
  hgvsp: ENSP00000354971.3:p.Ala1173Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3565G>C
  hgvsp: ENSP00000355106.3:p.Ala1189Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3514G>C
  hgvsp: ENSP00000354635.4:p.Ala1172Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3517G>C
  hgvsp: ENSP00000359180.2:p.Ala1173Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3565G>C
  hgvsp: ENSP00000359184.3:p.Ala1189Pro
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3565G>C
  hgvsp: ENSP00000359182.3:p.Ala1189Pro
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala1189Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-100366404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366404
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366404
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3524C>T
  hgvsp: ENSP00000354635.4:p.Pro1175Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3527C>T
  hgvsp: ENSP00000354971.3:p.Pro1176Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3527C>T
  hgvsp: ENSP00000359180.2:p.Pro1176Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3575C>T
  hgvsp: ENSP00000294724.4:p.Pro1192Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3575C>T
  hgvsp: ENSP00000359184.3:p.Pro1192Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3575C>T
  hgvsp: ENSP00000359182.3:p.Pro1192Leu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3575C>T
  hgvsp: ENSP00000355106.3:p.Pro1192Leu
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12108
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro1192Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

1-100366410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366410
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366410
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3581G>A
  hgvsp: ENSP00000294724.4:p.Gly1194Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3581G>A
  hgvsp: ENSP00000359182.3:p.Gly1194Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3581G>A
  hgvsp: ENSP00000359184.3:p.Gly1194Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3533G>A
  hgvsp: ENSP00000359180.2:p.Gly1178Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3533G>A
  hgvsp: ENSP00000354971.3:p.Gly1178Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3530G>A
  hgvsp: ENSP00000354635.4:p.Gly1177Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3581G>A
  hgvsp: ENSP00000355106.3:p.Gly1194Asp
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6572
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15964
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly1194Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

1-100366413-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366413
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366413
    reference: chr 1
allele count: 11
allele frequency: 9.06140336425194e-5
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3584C>G
  hgvsp: ENSP00000355106.3:p.Thr1195Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3536C>G
  hgvsp: ENSP00000354971.3:p.Thr1179Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3536C>G
  hgvsp: ENSP00000359180.2:p.Thr1179Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3584C>G
  hgvsp: ENSP00000359184.3:p.Thr1195Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3584C>G
  hgvsp: ENSP00000294724.4:p.Thr1195Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3533C>G
  hgvsp: ENSP00000354635.4:p.Thr1178Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3584C>G
  hgvsp: ENSP00000359182.3:p.Thr1195Arg
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3070
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6571
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr1195Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-100366420-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366420
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366420
    reference: chr 1
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+3A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+3A>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4922
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7268
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4270
  bin: 9.25e1
  variant carriers: 0
hgvs: c.3588+3A>G
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-100366421-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366421
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366421
    reference: chr 1
allele count: 2
allele frequency: 1.648858989579211e-5
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+4A>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+4A>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+4A>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+4A>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+4A>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+4A>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+4A>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3062
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5968
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15414
  bin: 6.25e1
  variant carriers: 0
hgvs: c.3588+4A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

1-100366427-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366427
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366427
    reference: chr 1
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+10T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+10T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+10T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+10T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+10T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+10T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+10T>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6499
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

1-100366430-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366430
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366430
    reference: chr 1
allele count: 5
allele frequency: 4.13544406398359e-5
allele num: 120906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+13C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+13C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+13C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+13C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+13C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+13C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+13C>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6825
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9303
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6461
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

1-100366435-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366435
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366435
    reference: chr 1
allele count: 1
allele frequency: 8.310755780130645e-6
allele num: 120326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+18A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+18A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+18A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+18A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+18A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+18A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+18A>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-100366436-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366436
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366437
    reference: chr 1
allele count: 64
allele frequency: 5.338315761377286e-4
allele num: 119888
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+20dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+20dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+20dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+20dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+20dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+20dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+20dupT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 6168
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12081
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

1-100366436-ATGTTTTTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366436
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366428
    reference: chr 1
allele count: 4
allele frequency: 3.336447350860804e-5
allele num: 119888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3533
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9925
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: ATGTTTTTT
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

1-100366436-A-ATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366436
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366438
    reference: chr 1
allele count: 13
allele frequency: 1.084345389029761e-4
allele num: 119888
alternate allele: ATT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+20_3588+21insTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+20_3540+21insTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+20_3588+21insTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+20_3588+21insTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+20_3540+21insTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+20_3537+21insTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+20_3588+21insTT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9925
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

1-100366436-A-ATTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366436
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366439
    reference: chr 1
allele count: 4
allele frequency: 3.336447350860804e-5
allele num: 119888
alternate allele: ATTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+20_3540+21insTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+20_3588+21insTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+20_3588+21insTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+20_3588+21insTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+20_3540+21insTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+20_3537+21insTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+20_3588+21insTTT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4910
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9925
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-100366437-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366437
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366436
    reference: chr 1
allele count: 13
allele frequency: 1.1573249768535e-4
allele num: 112328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+21delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+21delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+21delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+21delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+21delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+21delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+21delG
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 6379
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3997
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6731
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6635
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2858
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4887
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8389
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: TG
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

1-100366438-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366438
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366439
    reference: chr 1
allele count: 521
allele frequency: 5.222952923249659e-3
allele num: 99752
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+28dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+28dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+28dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+28dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+28dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+28dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+28dupT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 6.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 4.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 4.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 5.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 5.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 8.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 9.75e1
  variant carriers: 182
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 2.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 1.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 3.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 1.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 9.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 8444
  bin: 2.25e1
  variant carriers: 32
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-100366438-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366438
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366440
    reference: chr 1
allele count: 175
allele frequency: 1.754350789959099e-3
allele num: 99752
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+27_3540+28dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+27_3588+28dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+27_3588+28dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+27_3537+28dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+27_3540+28dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+27_3588+28dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+27_3588+28dupTT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 4.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5656
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 1.75e1
  variant carriers: 5
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-100366438-G-GTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366438
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366441
    reference: chr 1
allele count: 31
allele frequency: 3.107707113641832e-4
allele num: 99752
alternate allele: GTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+26_3588+28dupTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+26_3540+28dupTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+26_3537+28dupTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+26_3588+28dupTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+26_3588+28dupTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+26_3540+28dupTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+26_3588+28dupTTT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5893
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5080
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 3.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum

1-100366438-G-GTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366438
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366442
    reference: chr 1
allele count: 6
allele frequency: 6.014916994145481e-5
allele num: 99752
alternate allele: GTTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+25_3588+28dupTTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+25_3588+28dupTTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+25_3588+28dupTTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+25_3540+28dupTTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+25_3540+28dupTTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+25_3588+28dupTTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+25_3537+28dupTTTT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5080
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5656
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

1-100366438-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366438
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366438
    reference: chr 1
allele count: 385
allele frequency: 3.859571737910017e-3
allele num: 99752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+21G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+21G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+21G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+21G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+21G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+21G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+21G>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6368
  bin: 5.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 5.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 6.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 7.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 2.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 5.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 3.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 5080
  bin: 2.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 8444
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 7.5e0
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 4.75e1
  variant carriers: 16
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-100366439-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366439
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366439
    reference: chr 1
allele count: 1
allele frequency: 9.804113806153062e-6
allele num: 101998
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+22T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+22T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+22T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+22T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+22T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+22T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+22T>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5726
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3262
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4990
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5467
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

1-100366443-TTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366443
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366440
    reference: chr 1
allele count: 1
allele frequency: 9.287638153617536e-6
allele num: 107670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+29_3588+31delGTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+29_3537+31delGTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+29_3588+31delGTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+29_3588+31delGTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+29_3540+31delGTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+29_3540+31delGTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+29_3588+31delGTT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: TTTG
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum

1-100366444-TTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366444
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366442
    reference: chr 1
allele count: 24
allele frequency: 2.245593023691006e-4
allele num: 106876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+29_3540+30delGT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+29_3540+30delGT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+29_3588+30delGT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+29_3588+30delGT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+29_3537+30delGT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+29_3588+30delGT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+29_3588+30delGT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3634
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 5252
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4811
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 5.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: TTG
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

1-100366445-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366445
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366445
    reference: chr 1
allele count: 1
allele frequency: 9.944707426707507e-6
allele num: 100556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+28T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+28T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+28T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+28T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+28T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+28T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+28T>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3480
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4610
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-100366445-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366445
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366444
    reference: chr 1
allele count: 71
allele frequency: 7.060742272962329e-4
allele num: 100556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+29delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+29delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+29delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+29delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+29delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+29delG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+29delG
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3058
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5820
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 1.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 1.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 5960
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4610
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4977
  bin: 3.25e1
  variant carriers: 7
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TG
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

1-100366446-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366447
    reference: chr 1
allele count: 6951
allele frequency: 7.261805265357292e-2
allele num: 95720
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+44dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+44dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+44dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+44dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+44dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+44dupT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+44dupT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 1.75e1
  variant carriers: 1072
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.75e1
  variant carriers: 862
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 1.25e1
  variant carriers: 658
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 2.25e1
  variant carriers: 1355
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 1282
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.5e0
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.75e1
  variant carriers: 1486
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.25e1
  variant carriers: 575
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 6.25e1
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 4798
  bin: 2.5e0
  variant carriers: 308
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 257
genotype quality: GenotypeQuality
  all individuals: 23099
  bin: 9.75e1
  variant carriers: 2755
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 331
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 1.25e1
  variant carriers: 316
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 211
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.5e0
  variant carriers: 306
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 7.75e1
  variant carriers: 270
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 327
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

1-100366446-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366448
    reference: chr 1
allele count: 528
allele frequency: 5.516088591725867e-3
allele num: 95720
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+43_3540+44dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+43_3588+44dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+43_3537+44dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+43_3588+44dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+43_3588+44dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+43_3540+44dupTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+43_3588+44dupTT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 1.75e1
  variant carriers: 155
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 1.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.5e0
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 2.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 7.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 6.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 6.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.5e0
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 1.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 2.25e1
  variant carriers: 46
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-100366446-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366446
    reference: chr 1
allele count: 1884
allele frequency: 1.968240702047639e-2
allele num: 95720
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 2.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 1.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.75e1
  variant carriers: 356
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.75e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 407
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 1.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.25e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 4.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 7.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 100
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 6.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 2.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 4798
  bin: 2.5e0
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.5e0
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 7.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 1.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 23099
  bin: 9.75e1
  variant carriers: 721
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 9.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 6.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 89
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 265
  allele frequency: 1.907572703714368e-2
  allele num: 13892
  num of homozygotes: 0
population: African
  type: Population
  allele count: 193
  allele frequency: 2.662068965517241e-2
  allele num: 7250
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 806
  allele frequency: 1.545778834720571e-2
  allele num: 52142
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 16
  allele frequency: 2.133333333333333e-2
  allele num: 750
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-100366446-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366445
    reference: chr 1
allele count: 10541
allele frequency: 1.101232762223151e-1
allele num: 95720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+44delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+44delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+44delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+44delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+44delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+44delT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+44delT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 1.25e1
  variant carriers: 504
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.25e1
  variant carriers: 596
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.5e0
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.75e1
  variant carriers: 1727
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 932
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 348
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 1.75e1
  variant carriers: 999
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 2.25e1
  variant carriers: 1564
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.25e1
  variant carriers: 1300
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 2023
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.75e1
  variant carriers: 1889
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 219
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 6.75e1
  variant carriers: 469
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 344
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 544
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 497
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 532
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 1.25e1
  variant carriers: 525
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 320
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 544
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.5e0
  variant carriers: 541
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 7.75e1
  variant carriers: 385
num of homozygotes: 3
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: GT
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-100366446-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366444
    reference: chr 1
allele count: 40609
allele frequency: 4.242478061011283e-1
allele num: 95720
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.25e1
  variant carriers: 1613
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.5e0
  variant carriers: 1371
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 582
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.75e1
  variant carriers: 6829
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 2523
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 961
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 1.75e1
  variant carriers: 4597
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.75e1
  variant carriers: 5347
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 1.25e1
  variant carriers: 3048
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.25e1
  variant carriers: 3887
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 6647
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 2.25e1
  variant carriers: 6131
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 376
genotype quality: GenotypeQuality
  all individuals: 23099
  bin: 9.75e1
  variant carriers: 19698
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.5e0
  variant carriers: 1487
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 1545
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 1346
genotype quality: GenotypeQuality
  all individuals: 4798
  bin: 2.5e0
  variant carriers: 1452
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 7.75e1
  variant carriers: 1065
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 8.25e1
  variant carriers: 1035
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 1440
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 4.75e1
  variant carriers: 1417
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 1.25e1
  variant carriers: 1574
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 8.75e1
  variant carriers: 961
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 6.75e1
  variant carriers: 1196
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 1562
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 5.75e1
  variant carriers: 1213
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 1526
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 1519
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 9.25e1
  variant carriers: 1053
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 6.25e1
  variant carriers: 1237
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 2.25e1
  variant carriers: 1564
genotype quality: GenotypeQuality
  all individuals: 1572
  bin: 7.25e1
  variant carriers: 1198
num of homozygotes: 2600
population: East Asian
  type: Population
  allele count: 2572
  allele frequency: 3.966687230104873e-1
  allele num: 6484
  num of homozygotes: 150
population: South Asian
  type: Population
  allele count: 5121
  allele frequency: 3.686294270083501e-1
  allele num: 13892
  num of homozygotes: 127
population: European (Non-Finnish)
  type: Population
  allele count: 23571
  allele frequency: 4.52054006367228e-1
  allele num: 52142
  num of homozygotes: 1730
population: African
  type: Population
  allele count: 2672
  allele frequency: 3.68551724137931e-1
  allele num: 7250
  num of homozygotes: 179
population: Latino
population: European (Finnish)
population: Other
reference allele: GTT
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-100366446-GTTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366443
    reference: chr 1
allele count: 1457
allele frequency: 1.522147931466778e-2
allele num: 95720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+42_3588+44delTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+42_3540+44delTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+42_3588+44delTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+42_3588+44delTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+42_3588+44delTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+42_3540+44delTTT
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+42_3537+44delTTT
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 3.25e1
  variant carriers: 384
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 2.25e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 1.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 5.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 1.75e1
  variant carriers: 233
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 4.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.75e1
  variant carriers: 381
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 4.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 9.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 2.25e1
  variant carriers: 163
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.5e0
  variant carriers: 153
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 1.25e1
  variant carriers: 151
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 5.25e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 2.75e1
  variant carriers: 165
genotype quality: GenotypeQuality
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 7.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 4.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 3.75e1
  variant carriers: 109
num of homozygotes: 1
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: GTTT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-100366448-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366448
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366448
    reference: chr 1
allele count: 7
allele frequency: 4.175614411834884e-4
allele num: 16764
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+31T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+31T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+31T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+31T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+31T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+31T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+31T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

1-100366448-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366448
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366449
    reference: chr 1
allele count: 2
allele frequency: 1.193032689095681e-4
allele num: 16764
alternate allele: TG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+31_3588+32insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+31_3588+32insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+31_3537+32insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+31_3588+32insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+31_3588+32insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+31_3540+32insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+31_3540+32insG
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

1-100366449-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366449
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366449
    reference: chr 1
allele count: 1
allele frequency: 4.024144869215292e-5
allele num: 24850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+32T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+32T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+32T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+32T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+32T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+32T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+32T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30511
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-100366450-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366450
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366450
    reference: chr 1
allele count: 4
allele frequency: 3.838771593090211e-5
allele num: 104200
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+33T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+33T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+33T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+33T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+33T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+33T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+33T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5735
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9055
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5545
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum

1-100366450-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366450
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366451
    reference: chr 1
allele count: 9
allele frequency: 8.637236084452975e-5
allele num: 104200
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+33_3588+34insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+33_3537+34insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+33_3540+34insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+33_3588+34insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+33_3588+34insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+33_3588+34insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+33_3540+34insG
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5735
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3809
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

1-100366451-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366451
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366451
    reference: chr 1
allele count: 13
allele frequency: 1.134974681334032e-4
allele num: 114540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+34T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+34T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+34T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+34T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+34T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+34T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+34T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6999
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13503
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-100366452-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366452
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366452
    reference: chr 1
allele count: 1
allele frequency: 8.792909397861565e-6
allele num: 113728
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+35T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+35T>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3995
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-100366452-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366452
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366452
    reference: chr 1
allele count: 9
allele frequency: 7.913618458075408e-5
allele num: 113728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+35T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+35T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+35T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+35T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+35T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+35T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+35T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10441
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

1-100366452-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366452
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366453
    reference: chr 1
allele count: 1
allele frequency: 8.792909397861565e-6
allele num: 113728
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+35_3540+36insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+35_3540+36insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+35_3588+36insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+35_3588+36insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+35_3537+36insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+35_3588+36insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+35_3588+36insG
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3995
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-100366453-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366453
    reference: chr 1
allele count: 1896
allele frequency: 1.629257897088647e-2
allele num: 116372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+36T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+36T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+36T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+36T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+36T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+36T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+36T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 5.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 1.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 6.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 5.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 11581
  bin: 3.25e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 4.25e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 7593
  bin: 2.75e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 8532
  bin: 3.75e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 4.75e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3975
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6717
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 23
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-100366453-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366454
    reference: chr 1
allele count: 1
allele frequency: 8.593132368611007e-6
allele num: 116372
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+36_3537+37insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+36_3588+37insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+36_3540+37insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+36_3588+37insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+36_3540+37insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+36_3588+37insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+36_3588+37insG
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12012
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3550
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13003
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-100366454-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366454
    reference: chr 1
allele count: 29
allele frequency: 2.466573674004015e-4
allele num: 117572
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+37T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+37T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+37T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+37T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+37T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+37T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+37T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-100366455-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366455
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366455
    reference: chr 1
allele count: 4
allele frequency: 3.40651666638279e-5
allele num: 117422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+38T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+38T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+38T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+38T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+38T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+38T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+38T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6834
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3880
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2803
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

1-100366455-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366455
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366456
    reference: chr 1
allele count: 1
allele frequency: 8.516291665956975e-6
allele num: 117422
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+38_3537+39insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+38_3588+39insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+38_3588+39insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+38_3540+39insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+38_3588+39insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+38_3588+39insG
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+38_3540+39insG
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10828
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13538
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

1-100366461-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366461
    reference: chr 1
allele count: 1
allele frequency: 8.941984405179198e-6
allele num: 111832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+44T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+44T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+44T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+44T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+44T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+44T>C
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+44T>C
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3962
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

1-100366461-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366460
    reference: chr 1
allele count: 2
allele frequency: 1.78839688103584e-5
allele num: 111832
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+45delC
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+45delC
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+45delC
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+45delC
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+45delC
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+45delC
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+45delC
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9800
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10244
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: TC
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-100366462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100366462
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100366462
    reference: chr 1
allele count: 9
allele frequency: 8.675869514922495e-5
allele num: 103736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3588+45C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3588+45C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3588+45C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3540+45C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3540+45C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3588+45C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3537+45C>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9497
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4639
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2827
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4060
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

1-100368193-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368193
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368193
    reference: chr 1
allele count: 1
allele frequency: 8.323899580475461e-6
allele num: 120136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3589-46A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3538-46A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3541-46A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3589-46A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3541-46A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3589-46A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3589-46A>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-100368199-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368199
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368199
    reference: chr 1
allele count: 1
allele frequency: 8.324315325064513e-6
allele num: 120130
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3589-40T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3541-40T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3589-40T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3589-40T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3589-40T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3541-40T>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3538-40T>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

1-100368207-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368207
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368207
    reference: chr 1
allele count: 6
allele frequency: 4.993591557501207e-5
allele num: 120154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3538-32A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3589-32A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3589-32A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3541-32A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3541-32A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3589-32A>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3589-32A>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-100368209-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368209
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368209
    reference: chr 1
allele count: 7
allele frequency: 5.825856817084741e-5
allele num: 120154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3589-30C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3589-30C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3541-30C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3541-30C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3538-30C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3589-30C>G
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3589-30C>G
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-100368214-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368214
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368214
    reference: chr 1
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3589-25G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3538-25G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3589-25G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3541-25G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3589-25G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3541-25G>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3589-25G>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6626
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

1-100368220-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368220
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368220
    reference: chr 1
allele count: 20
allele frequency: 1.663865825859803e-4
allele num: 120202
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3589-19C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3589-19C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3589-19C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3538-19C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3541-19C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3541-19C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3589-19C>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14836
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39072
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-100368222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368222
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368222
    reference: chr 1
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3541-17C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3538-17C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3589-17C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3589-17C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3541-17C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3589-17C>T
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3589-17C>T
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6616
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-100368228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368228
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368228
    reference: chr 1
allele count: 1
allele frequency: 8.319052293562717e-6
allele num: 120206
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3589-11G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3541-11G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3589-11G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3589-11G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3541-11G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3538-11G>A
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3589-11G>A
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6615
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

1-100368247-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368247
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368247
    reference: chr 1
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3597A>G
  hgvsp: ENST00000370163.3:c.3597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3597A>G
  hgvsp: ENST00000370165.3:c.3597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3597A>G
  hgvsp: ENST00000294724.4:c.3597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3597A>G
  hgvsp: ENST00000361915.3:c.3597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3549A>G
  hgvsp: ENST00000370161.2:c.3549A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3546A>G
  hgvsp: ENST00000361522.4:c.3546A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3549A>G
  hgvsp: ENST00000361302.3:c.3549A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7478
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6615
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro1199Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

1-100368256-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368256
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368256
    reference: chr 1
allele count: 1
allele frequency: 8.3166999334664e-6
allele num: 120240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3558A>G
  hgvsp: ENST00000370161.2:c.3558A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3558A>G
  hgvsp: ENST00000361302.3:c.3558A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3606A>G
  hgvsp: ENST00000361915.3:c.3606A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3606A>G
  hgvsp: ENST00000294724.4:c.3606A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3606A>G
  hgvsp: ENST00000370163.3:c.3606A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3606A>G
  hgvsp: ENST00000370165.3:c.3606A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3555A>G
  hgvsp: ENST00000361522.4:c.3555A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu1202Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

1-100368259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368259
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368259
    reference: chr 1
allele count: 1
allele frequency: 8.316976612661764e-6
allele num: 120236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3561C>T
  hgvsp: ENST00000370161.2:c.3561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3609C>T
  hgvsp: ENST00000294724.4:c.3609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3558C>T
  hgvsp: ENST00000361522.4:c.3558C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3561C>T
  hgvsp: ENST00000361302.3:c.3561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3609C>T
  hgvsp: ENST00000370163.3:c.3609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3609C>T
  hgvsp: ENST00000370165.3:c.3609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3609C>T
  hgvsp: ENST00000361915.3:c.3609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val1203Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-100368263-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368263
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368263
    reference: chr 1
allele count: 1
allele frequency: 8.316561600771776e-6
allele num: 120242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3613C>A
  hgvsp: ENSP00000355106.3:p.Gln1205Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3562C>A
  hgvsp: ENSP00000354635.4:p.Gln1188Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3613C>A
  hgvsp: ENSP00000294724.4:p.Gln1205Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3565C>A
  hgvsp: ENSP00000354971.3:p.Gln1189Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3613C>A
  hgvsp: ENSP00000359184.3:p.Gln1205Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3565C>A
  hgvsp: ENSP00000359180.2:p.Gln1189Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3613C>A
  hgvsp: ENSP00000359182.3:p.Gln1205Lys
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8249
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln1205Lys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

1-100368263-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368263
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368263
    reference: chr 1
allele count: 2
allele frequency: 1.663312320154355e-5
allele num: 120242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3565C>G
  hgvsp: ENSP00000354971.3:p.Gln1189Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3613C>G
  hgvsp: ENSP00000294724.4:p.Gln1205Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3565C>G
  hgvsp: ENSP00000359180.2:p.Gln1189Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3613C>G
  hgvsp: ENSP00000359182.3:p.Gln1205Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3613C>G
  hgvsp: ENSP00000359184.3:p.Gln1205Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3613C>G
  hgvsp: ENSP00000355106.3:p.Gln1205Glu
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3562C>G
  hgvsp: ENSP00000354635.4:p.Gln1188Glu
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39171
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln1205Glu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-100368263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368263
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368263
    reference: chr 1
allele count: 6
allele frequency: 4.989936960463066e-5
allele num: 120242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3613C>T
  hgvsp: ENSP00000359184.3:p.Gln1205Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3613C>T
  hgvsp: ENSP00000355106.3:p.Gln1205Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3565C>T
  hgvsp: ENSP00000354971.3:p.Gln1189Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3613C>T
  hgvsp: ENSP00000359182.3:p.Gln1205Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3565C>T
  hgvsp: ENSP00000359180.2:p.Gln1189Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3613C>T
  hgvsp: ENSP00000294724.4:p.Gln1205Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3562C>T
  hgvsp: ENSP00000354635.4:p.Gln1188Ter
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39171
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln1205Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

1-100368269-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368269
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368269
    reference: chr 1
allele count: 343
allele frequency: 2.852485737571312e-3
allele num: 120246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3619G>A
  hgvsp: ENSP00000359184.3:p.Ala1207Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3568G>A
  hgvsp: ENSP00000354635.4:p.Ala1190Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3571G>A
  hgvsp: ENSP00000359180.2:p.Ala1191Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3571G>A
  hgvsp: ENSP00000354971.3:p.Ala1191Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3619G>A
  hgvsp: ENSP00000294724.4:p.Ala1207Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3619G>A
  hgvsp: ENSP00000359182.3:p.Ala1207Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3619G>A
  hgvsp: ENSP00000355106.3:p.Ala1207Thr
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14828
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6686
  bin: 9.75e1
  variant carriers: 337
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39163
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Ala1207Thr
num of homozygotes: 6
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

1-100368283-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368283
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368283
    reference: chr 1
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3633C>T
  hgvsp: ENST00000370165.3:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3585C>T
  hgvsp: ENST00000370161.2:c.3585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3633C>T
  hgvsp: ENST00000294724.4:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3585C>T
  hgvsp: ENST00000361302.3:c.3585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3633C>T
  hgvsp: ENST00000370163.3:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3633C>T
  hgvsp: ENST00000361915.3:c.3633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3582C>T
  hgvsp: ENST00000361522.4:c.3582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6395
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His1211His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

1-100368285-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368285
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368285
    reference: chr 1
allele count: 3
allele frequency: 2.495674164781046e-5
allele num: 120208
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3635T>C
  hgvsp: ENSP00000355106.3:p.Met1212Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3635T>C
  hgvsp: ENSP00000294724.4:p.Met1212Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3587T>C
  hgvsp: ENSP00000359180.2:p.Met1196Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3635T>C
  hgvsp: ENSP00000359184.3:p.Met1212Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3587T>C
  hgvsp: ENSP00000354971.3:p.Met1196Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3635T>C
  hgvsp: ENSP00000359182.3:p.Met1212Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3584T>C
  hgvsp: ENSP00000354635.4:p.Met1195Thr
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8286
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met1212Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

1-100368293-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368293
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368293
    reference: chr 1
allele count: 5
allele frequency: 4.160495265356388e-5
allele num: 120178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3595A>G
  hgvsp: ENSP00000359180.2:p.Ile1199Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3595A>G
  hgvsp: ENSP00000354971.3:p.Ile1199Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3592A>G
  hgvsp: ENSP00000354635.4:p.Ile1198Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3643A>G
  hgvsp: ENSP00000359182.3:p.Ile1215Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3643A>G
  hgvsp: ENSP00000294724.4:p.Ile1215Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3643A>G
  hgvsp: ENSP00000355106.3:p.Ile1215Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3643A>G
  hgvsp: ENSP00000359184.3:p.Ile1215Val
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1215Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

1-100368302-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368302
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368302
    reference: chr 1
allele count: 1
allele frequency: 8.325562808045825e-6
allele num: 120112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3652C>T
  hgvsp: ENSP00000359182.3:p.Arg1218Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3601C>T
  hgvsp: ENSP00000354635.4:p.Arg1201Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3604C>T
  hgvsp: ENSP00000359180.2:p.Arg1202Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3652C>T
  hgvsp: ENSP00000355106.3:p.Arg1218Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3652C>T
  hgvsp: ENSP00000294724.4:p.Arg1218Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3652C>T
  hgvsp: ENSP00000359184.3:p.Arg1218Ter
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3604C>T
  hgvsp: ENSP00000354971.3:p.Arg1202Ter
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg1218Ter
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

1-100368303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368303
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368303
    reference: chr 1
allele count: 3
allele frequency: 2.497752023179139e-5
allele num: 120108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3653G>A
  hgvsp: ENSP00000359182.3:p.Arg1218Gln
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3605G>A
  hgvsp: ENSP00000354971.3:p.Arg1202Gln
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3653G>A
  hgvsp: ENSP00000359184.3:p.Arg1218Gln
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3653G>A
  hgvsp: ENSP00000355106.3:p.Arg1218Gln
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3653G>A
  hgvsp: ENSP00000294724.4:p.Arg1218Gln
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3605G>A
  hgvsp: ENSP00000359180.2:p.Arg1202Gln
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3602G>A
  hgvsp: ENSP00000354635.4:p.Arg1201Gln
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg1218Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

1-100368313-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368313
    reference: chr 1
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3612T>A
  hgvsp: ENSP00000354635.4:p.Asn1204Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3615T>A
  hgvsp: ENSP00000359180.2:p.Asn1205Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3663T>A
  hgvsp: ENSP00000359182.3:p.Asn1221Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3615T>A
  hgvsp: ENSP00000354971.3:p.Asn1205Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3663T>A
  hgvsp: ENSP00000355106.3:p.Asn1221Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3663T>A
  hgvsp: ENSP00000294724.4:p.Asn1221Lys
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3663T>A
  hgvsp: ENSP00000359184.3:p.Asn1221Lys
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14913
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6379
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn1221Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

1-100368318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368318
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368318
    reference: chr 1
allele count: 33
allele frequency: 2.749358483020628e-4
allele num: 120028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3617G>A
  hgvsp: ENSP00000354635.4:p.Gly1206Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3620G>A
  hgvsp: ENSP00000354971.3:p.Gly1207Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3620G>A
  hgvsp: ENSP00000359180.2:p.Gly1207Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3668G>A
  hgvsp: ENSP00000359184.3:p.Gly1223Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3668G>A
  hgvsp: ENSP00000359182.3:p.Gly1223Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3668G>A
  hgvsp: ENSP00000294724.4:p.Gly1223Asp
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3668G>A
  hgvsp: ENSP00000355106.3:p.Gly1223Asp
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 26544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly1223Asp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-100368326-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368326
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368326
    reference: chr 1
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3628A>G
  hgvsp: ENSP00000354971.3:p.Ile1210Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3625A>G
  hgvsp: ENSP00000354635.4:p.Ile1209Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3676A>G
  hgvsp: ENSP00000355106.3:p.Ile1226Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3676A>G
  hgvsp: ENSP00000359182.3:p.Ile1226Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3676A>G
  hgvsp: ENSP00000359184.3:p.Ile1226Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3676A>G
  hgvsp: ENSP00000294724.4:p.Ile1226Val
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3628A>G
  hgvsp: ENSP00000359180.2:p.Ile1210Val
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile1226Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

1-100368327-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368327
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368327
    reference: chr 1
allele count: 1
allele frequency: 8.340561820244212e-6
allele num: 119896
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3677T>C
  hgvsp: ENSP00000294724.4:p.Ile1226Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3629T>C
  hgvsp: ENSP00000359180.2:p.Ile1210Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3626T>C
  hgvsp: ENSP00000354635.4:p.Ile1209Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3677T>C
  hgvsp: ENSP00000359184.3:p.Ile1226Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3677T>C
  hgvsp: ENSP00000355106.3:p.Ile1226Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3629T>C
  hgvsp: ENSP00000354971.3:p.Ile1210Thr
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3677T>C
  hgvsp: ENSP00000359182.3:p.Ile1226Thr
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile1226Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

1-100368327-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100368327
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 100368327
    reference: chr 1
allele count: 1
allele frequency: 8.340561820244212e-6
allele num: 119896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354971
  ensembl transcript: ENST00000361302
  gene symbol: AGL
  hgvsc: ENST00000361302.3:c.3629T>G
  hgvsp: ENSP00000354971.3:p.Ile1210Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359182
  ensembl transcript: ENST00000370163
  gene symbol: AGL
  hgvsc: ENST00000370163.3:c.3677T>G
  hgvsp: ENSP00000359182.3:p.Ile1226Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000294724
  ensembl transcript: ENST00000294724
  gene symbol: AGL
  hgvsc: ENST00000294724.4:c.3677T>G
  hgvsp: ENSP00000294724.4:p.Ile1226Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359180
  ensembl transcript: ENST00000370161
  gene symbol: AGL
  hgvsc: ENST00000370161.2:c.3629T>G
  hgvsp: ENSP00000359180.2:p.Ile1210Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000359184
  ensembl transcript: ENST00000370165
  gene symbol: AGL
  hgvsc: ENST00000370165.3:c.3677T>G
  hgvsp: ENSP00000359184.3:p.Ile1226Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000354635
  ensembl transcript: ENST00000361522
  gene symbol: AGL
  hgvsc: ENST00000361522.4:c.3626T>G
  hgvsp: ENSP00000354635.4:p.Ile1209Arg
  variant of: http://identifiers.org/hgnc/321
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000162688
  ensembl protein: ENSP00000355106
  ensembl transcript: ENST00000361915
  gene symbol: AGL
  hgvsc: ENST00000361915.3:c.3677T>G
  hgvsp: ENSP00000355106.3:p.Ile1226Arg
  variant of: http://identifiers.org/hgnc/321
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6340
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8233
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile1226Arg
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12109
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9852
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

DP
type: SiteQuality
SIO_000300: 3.45381e6

QD
type: SiteQuality
SIO_000300: 1.283e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.48e-1

FS
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9849
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6574
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4273
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.881e1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.441e0

QD
type: SiteQuality
SIO_000300: 2.509e1

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 3.45373e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.094e0

VQSLOD
type: SiteQuality
SIO_000300: -6.462e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.764e1

DP
type: SiteQuality
SIO_000300: 3.453068e6

QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.198825151351675e-4
allele num: 66732
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.383e0

QD
type: SiteQuality
SIO_000300: 1.415e1

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

DP
type: SiteQuality
SIO_000300: 3.45356e6

FS
type: SiteQuality
SIO_000300: 9.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

DP
type: SiteQuality
SIO_000300: 3.443076e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.126e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.61e-1

MQ
type: SiteQuality
SIO_000300: 6.002e1

MQRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

FS
type: SiteQuality
SIO_000300: 1.0424e1

VQSLOD
type: SiteQuality
SIO_000300: -9.478e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

DP
type: SiteQuality
SIO_000300: 3.441269e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

QD
type: SiteQuality
SIO_000300: 1.846e1

DP
type: SiteQuality
SIO_000300: 3.430978e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.95579894386857e-4
allele num: 10226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008514094888535e-5
allele num: 66478
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 6.5e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.062075654704171e-5
allele num: 16496
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66164
num of homozygotes: 0

Other
type: Population
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

East Asian
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allele count: 2
allele frequency: 2.331545814875262e-4
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.639230909201189e-4
allele num: 65948
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.111111111111111e-3
allele num: 900
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European (Finnish)
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African
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allele count: 11
allele frequency: 1.115166261151663e-3
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Latino
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allele frequency: 5.202913631633715e-4
allele num: 11532
num of homozygotes: 0

South Asian
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allele frequency: 1.214919207872676e-3
allele num: 16462
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
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allele num: 16462
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6604
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African
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allele count: 3
allele frequency: 3.041362530413625e-4
allele num: 9864
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516346212167162e-5
allele num: 65948
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Other
type: Population
allele count: 0
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allele num: 900
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MQRankSum
type: SiteQuality
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DP
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MQ
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
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FS
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.068937550689375e-4
allele num: 9864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032692424334324e-5
allele num: 65948
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.429838415745353e-4
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

FS
type: SiteQuality
SIO_000300: 2.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.214e0

VQSLOD
type: SiteQuality
SIO_000300: -9.744e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

DP
type: SiteQuality
SIO_000300: 3.411821e6

GenotypeQuality
all individuals: 2519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3533
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12081
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032692424334324e-5
allele num: 65948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013787510137875e-4
allele num: 9864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

QD
type: SiteQuality
SIO_000300: 8.5e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 3.411821e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.214e0

VQSLOD
type: SiteQuality
SIO_000300: -9.744e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.76e-1

GenotypeQuality
all individuals: 5749
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2043
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 800
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4583
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.494076568150642e-4
allele num: 16038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.143057229406209e-5
allele num: 61402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.107520198881293e-4
allele num: 6436
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.338087444470423e-4
allele num: 8554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.864e0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

QD
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 3.412377e6

GenotypeQuality
all individuals: 2056
bin: 7.75e1
variant carriers: 20

GenotypeQuality
all individuals: 5656
bin: 3.25e1
variant carriers: 35

GenotypeQuality
all individuals: 1590
bin: 5.25e1
variant carriers: 21

GenotypeQuality
all individuals: 3793
bin: 6.75e1
variant carriers: 25

GenotypeQuality
all individuals: 5080
bin: 2.5e0
variant carriers: 43

GenotypeQuality
all individuals: 2592
bin: 7.5e0
variant carriers: 36

GenotypeQuality
all individuals: 762
bin: 5.75e1
variant carriers: 20

GenotypeQuality
all individuals: 2556
bin: 4.75e1
variant carriers: 30

GenotypeQuality
all individuals: 5893
bin: 6.25e1
variant carriers: 25

GenotypeQuality
all individuals: 1446
bin: 8.25e1
variant carriers: 17

African
type: Population
allele count: 69
allele frequency: 9.49367088607595e-3
allele num: 7268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.832111925383078e-3
allele num: 6004
num of homozygotes: 0

Latino
type: Population
allele count: 67
allele frequency: 6.912917870408585e-3
allele num: 9692
num of homozygotes: 0

South Asian
type: Population
allele count: 76
allele frequency: 5.830903790087463e-3
allele num: 13034
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.816793893129771e-3
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 48
allele frequency: 6.86695278969957e-3
allele num: 6990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 247
allele frequency: 4.412447747329308e-3
allele num: 55978
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.471552e6

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.49e-2

FS
type: SiteQuality
SIO_000300: 2.244e0

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

QD
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 8444
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 5080
bin: 2.5e0
variant carriers: 7

GenotypeQuality
all individuals: 1446
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2592
bin: 7.5e0
variant carriers: 16

GenotypeQuality
all individuals: 1588
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 3782
bin: 2.75e1
variant carriers: 9

GenotypeQuality
all individuals: 5893
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 3793
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2056
bin: 7.75e1
variant carriers: 8

South Asian
type: Population
allele count: 23
allele frequency: 1.764615620684364e-3
allele num: 13034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 84
allele frequency: 1.500589517310372e-3
allele num: 55978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 8.327781479013991e-4
allele num: 6004
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 2.269913330581923e-3
allele num: 9692
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 3.577325261419923e-3
allele num: 7268
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 2.002861230329041e-3
allele num: 6990
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.272264631043257e-3
allele num: 786
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.244e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.49e-2

MQ
type: SiteQuality
SIO_000300: 5.916e1

DP
type: SiteQuality
SIO_000300: 3.471552e6

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

GenotypeQuality
all individuals: 2592
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 743
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1590
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3782
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1588
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8444
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1446
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5656
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.430615164520744e-4
allele num: 6990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 3.036907356461467e-4
allele num: 55978
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.127682993946065e-4
allele num: 7268
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.603345097437471e-4
allele num: 13034
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.095336359884441e-4
allele num: 9692
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.272264631043257e-3
allele num: 786
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 3.471552e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.49e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

FS
type: SiteQuality
SIO_000300: 2.244e0

QD
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

GenotypeQuality
all individuals: 2095
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4334
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8444
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1590
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4186
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1588
bin: 7.25e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.375894331315355e-4
allele num: 7268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6990
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.672241829062452e-5
allele num: 13034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.145664368144628e-5
allele num: 55978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.49e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

FS
type: SiteQuality
SIO_000300: 2.244e0

DP
type: SiteQuality
SIO_000300: 3.471552e6

QD
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

GenotypeQuality
all individuals: 2095
bin: 4.25e1
variant carriers: 17

GenotypeQuality
all individuals: 5656
bin: 3.25e1
variant carriers: 31

GenotypeQuality
all individuals: 1385
bin: 1.25e1
variant carriers: 22

GenotypeQuality
all individuals: 1362
bin: 1.75e1
variant carriers: 23

GenotypeQuality
all individuals: 5893
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 4186
bin: 9.75e1
variant carriers: 156

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 2056
bin: 7.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1588
bin: 7.25e1
variant carriers: 20

GenotypeQuality
all individuals: 743
bin: 8.75e1
variant carriers: 6

African
type: Population
allele count: 36
allele frequency: 4.953219592735278e-3
allele num: 7268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 164
allele frequency: 2.929722390939297e-3
allele num: 55978
num of homozygotes: 0

East Asian
type: Population
allele count: 32
allele frequency: 4.577968526466381e-3
allele num: 6990
num of homozygotes: 0

Latino
type: Population
allele count: 58
allele frequency: 5.984316962443252e-3
allele num: 9692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 2.165223184543638e-3
allele num: 6004
num of homozygotes: 0

South Asian
type: Population
allele count: 78
allele frequency: 5.984348626668713e-3
allele num: 13034
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.089058524173028e-3
allele num: 786
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.49e-2

DP
type: SiteQuality
SIO_000300: 3.471552e6

FS
type: SiteQuality
SIO_000300: 2.244e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

GenotypeQuality
all individuals: 4464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6933
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2498
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.803751803751804e-5
allele num: 55440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5952
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.429738e6

QD
type: SiteQuality
SIO_000300: 3.265e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.96e-1

GenotypeQuality
all individuals: 3498
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1900
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1896
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4818
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2350
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10786
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.220107369448512e-4
allele num: 8196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15674
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.688e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 2.332e0

DP
type: SiteQuality
SIO_000300: 3.386835e6

QD
type: SiteQuality
SIO_000300: 2.83e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

GenotypeQuality
all individuals: 3061
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2424
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 1487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2013
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7682
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2334
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5231
bin: 9.75e1
variant carriers: 8

Latino
type: Population
allele count: 2
allele frequency: 1.866368047779022e-4
allele num: 10716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.755959762987461e-4
allele num: 58056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.906771344455348e-4
allele num: 6114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.025764895330113e-4
allele num: 7452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.449e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 3.373722e6

GenotypeQuality
all individuals: 6101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5217
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2798
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1907
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5960
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.847472657404671e-5
allele num: 54128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15072
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.315759e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.473e0

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

FS
type: SiteQuality
SIO_000300: 2.303e0

VQSLOD
type: SiteQuality
SIO_000300: -6.269e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 2283
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3480
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 924
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2456
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2284
bin: 7.5e0
variant carriers: 14

GenotypeQuality
all individuals: 6101
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3272
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1178
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1471
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 5217
bin: 9.75e1
variant carriers: 8

East Asian
type: Population
allele count: 12
allele frequency: 1.720183486238532e-3
allele num: 6976
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.644373673036093e-4
allele num: 15072
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.530825496342738e-4
allele num: 7656
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.817080320500293e-4
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 6.466154300916346e-4
allele num: 54128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 7.000350017500875e-4
allele num: 5714
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

DP
type: SiteQuality
SIO_000300: 3.315759e6

QD
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.473e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: -6.269e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 2.303e0

GenotypeQuality
all individuals: 2153
bin: 2.25e1
variant carriers: 327

GenotypeQuality
all individuals: 2105
bin: 3.25e1
variant carriers: 312

GenotypeQuality
all individuals: 2094
bin: 2.75e1
variant carriers: 331

GenotypeQuality
all individuals: 1354
bin: 9.25e1
variant carriers: 226

GenotypeQuality
all individuals: 1572
bin: 7.25e1
variant carriers: 275

GenotypeQuality
all individuals: 1605
bin: 6.75e1
variant carriers: 279

GenotypeQuality
all individuals: 1933
bin: 4.75e1
variant carriers: 305

GenotypeQuality
all individuals: 1649
bin: 5.75e1
variant carriers: 298

GenotypeQuality
all individuals: 1808
bin: 5.25e1
variant carriers: 304

GenotypeQuality
all individuals: 2085
bin: 3.75e1
variant carriers: 360

Latino
type: Population
allele count: 719
allele frequency: 7.474012474012474e-2
allele num: 9620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 226
allele frequency: 4.048728054460767e-2
allele num: 5582
num of homozygotes: 0

East Asian
type: Population
allele count: 511
allele frequency: 7.880937692782233e-2
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 627
allele frequency: 8.648275862068966e-2
allele num: 7250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3217
allele frequency: 6.169690460665107e-2
allele num: 52142
num of homozygotes: 0

South Asian
type: Population
allele count: 1605
allele frequency: 1.1553412035704e-1
allele num: 13892
num of homozygotes: 0

Other
type: Population
allele count: 46
allele frequency: 6.133333333333333e-2
allele num: 750
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.318e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 1.031e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

DP
type: SiteQuality
SIO_000300: 1.896931e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

GenotypeQuality
all individuals: 1808
bin: 5.25e1
variant carriers: 31

GenotypeQuality
all individuals: 1933
bin: 4.75e1
variant carriers: 23

GenotypeQuality
all individuals: 4798
bin: 2.5e0
variant carriers: 36

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1354
bin: 9.25e1
variant carriers: 13

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 21

GenotypeQuality
all individuals: 2105
bin: 3.25e1
variant carriers: 40

GenotypeQuality
all individuals: 23099
bin: 9.75e1
variant carriers: 163

GenotypeQuality
all individuals: 2094
bin: 2.75e1
variant carriers: 36

GenotypeQuality
all individuals: 1649
bin: 5.75e1
variant carriers: 36

South Asian
type: Population
allele count: 117
allele frequency: 8.422113446587965e-3
allele num: 13892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.791472590469366e-3
allele num: 5582
num of homozygotes: 0

East Asian
type: Population
allele count: 27
allele frequency: 4.164096236890808e-3
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 43
allele frequency: 4.46985446985447e-3
allele num: 9620
num of homozygotes: 0

African
type: Population
allele count: 71
allele frequency: 9.793103448275862e-3
allele num: 7250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 259
allele frequency: 4.967204940355184e-3
allele num: 52142
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.333333333333333e-3
allele num: 750
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

DP
type: SiteQuality
SIO_000300: 1.896931e6

QD
type: SiteQuality
SIO_000300: 1.031e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.318e-1

European (Finnish)
type: Population
allele count: 101
allele frequency: 1.809387316374059e-2
allele num: 5582
num of homozygotes: 0

East Asian
type: Population
allele count: 156
allele frequency: 2.405922270203578e-2
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 347
allele frequency: 3.607068607068607e-2
allele num: 9620
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.031e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.318e-1

DP
type: SiteQuality
SIO_000300: 1.896931e6

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

GenotypeQuality
all individuals: 1943
bin: 4.25e1
variant carriers: 540

GenotypeQuality
all individuals: 2105
bin: 3.25e1
variant carriers: 542

GenotypeQuality
all individuals: 23099
bin: 9.75e1
variant carriers: 3721

GenotypeQuality
all individuals: 1696
bin: 6.25e1
variant carriers: 431

GenotypeQuality
all individuals: 1933
bin: 4.75e1
variant carriers: 564

GenotypeQuality
all individuals: 4798
bin: 2.5e0
variant carriers: 416

GenotypeQuality
all individuals: 1572
bin: 7.25e1
variant carriers: 393

GenotypeQuality
all individuals: 1354
bin: 9.25e1
variant carriers: 348

GenotypeQuality
all individuals: 1649
bin: 5.75e1
variant carriers: 443

GenotypeQuality
all individuals: 2153
bin: 2.25e1
variant carriers: 539

Other
type: Population
allele count: 82
allele frequency: 1.093333333333333e-1
allele num: 750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 422
allele frequency: 7.560014331780723e-2
allele num: 5582
num of homozygotes: 0

East Asian
type: Population
allele count: 574
allele frequency: 8.852560148056755e-2
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 1027
allele frequency: 1.416551724137931e-1
allele num: 7250
num of homozygotes: 3

Latino
type: Population
allele count: 956
allele frequency: 9.937629937629938e-2
allele num: 9620
num of homozygotes: 0

South Asian
type: Population
allele count: 1518
allele frequency: 1.092715231788079e-1
allele num: 13892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5962
allele frequency: 1.143416056154348e-1
allele num: 52142
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.318e-1

DP
type: SiteQuality
SIO_000300: 1.896931e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.031e1

Latino
type: Population
allele count: 3746
allele frequency: 3.893970893970894e-1
allele num: 9620
num of homozygotes: 120

European (Finnish)
type: Population
allele count: 2590
allele frequency: 4.639914009315658e-1
allele num: 5582
num of homozygotes: 272

Other
type: Population
allele count: 337
allele frequency: 4.493333333333333e-1
allele num: 750
num of homozygotes: 22

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

QD
type: SiteQuality
SIO_000300: 1.031e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.318e-1

DP
type: SiteQuality
SIO_000300: 1.896931e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

GenotypeQuality
all individuals: 4798
bin: 2.5e0
variant carriers: 373

GenotypeQuality
all individuals: 1572
bin: 7.25e1
variant carriers: 54

GenotypeQuality
all individuals: 23099
bin: 9.75e1
variant carriers: 269

GenotypeQuality
all individuals: 1943
bin: 4.25e1
variant carriers: 91

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1253
bin: 8.75e1
variant carriers: 24

GenotypeQuality
all individuals: 1696
bin: 6.25e1
variant carriers: 63

GenotypeQuality
all individuals: 1605
bin: 6.75e1
variant carriers: 57

GenotypeQuality
all individuals: 1649
bin: 5.75e1
variant carriers: 73

GenotypeQuality
all individuals: 1354
bin: 9.25e1
variant carriers: 22

South Asian
type: Population
allele count: 89
allele frequency: 6.406564929455802e-3
allele num: 13892
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 1.066666666666667e-2
allele num: 750
num of homozygotes: 0

East Asian
type: Population
allele count: 87
allele frequency: 1.341764342998149e-2
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1002
allele frequency: 1.921675424801503e-2
allele num: 52142
num of homozygotes: 0

Latino
type: Population
allele count: 90
allele frequency: 9.355509355509356e-3
allele num: 9620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 73
allele frequency: 1.307774991042637e-2
allele num: 5582
num of homozygotes: 0

African
type: Population
allele count: 108
allele frequency: 1.489655172413793e-2
allele num: 7250
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.318e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

QD
type: SiteQuality
SIO_000300: 1.031e1

DP
type: SiteQuality
SIO_000300: 1.896931e6

GenotypeQuality
all individuals: 438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4347
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 676
bin: 6.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1848
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 5.376344086021506e-3
allele num: 1302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.026e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.84499e5

QD
type: SiteQuality
SIO_000300: 2.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.87e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

FS
type: SiteQuality
SIO_000300: 1.679e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.576e0

GenotypeQuality
all individuals: 438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4347
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.637130801687763e-4
allele num: 7584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.576e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 6.026e1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

FS
type: SiteQuality
SIO_000300: 1.679e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.87e-2

DP
type: SiteQuality
SIO_000300: 5.84499e5

GenotypeQuality
all individuals: 331
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.545454545454545e-4
allele num: 2200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.089e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 4.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.105e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-1

DP
type: SiteQuality
SIO_000300: 2.147201e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 1090
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10524
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3809
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.73190162798753e-4
allele num: 5774
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.47332988089073e-5
allele num: 15448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56094
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.456398919184475e-4
allele num: 8142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10468
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.533e0

DP
type: SiteQuality
SIO_000300: 2.273346e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

FS
type: SiteQuality
SIO_000300: 8.955e0

MQ
type: SiteQuality
SIO_000300: 6.048e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

GenotypeQuality
all individuals: 1814
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3290
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9055
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2258
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.178663904712584e-4
allele num: 15448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.782721859735444e-5
allele num: 56094
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.533e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

DP
type: SiteQuality
SIO_000300: 2.273346e6

MQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

FS
type: SiteQuality
SIO_000300: 8.955e0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

MQ
type: SiteQuality
SIO_000300: 6.048e1

GenotypeQuality
all individuals: 4461
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3899
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3788
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3645
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variant carriers: 0

GenotypeQuality
all individuals: 10674
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 280
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.83981356555869e-4
allele num: 16306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8932
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.191828917969997e-5
allele num: 62660
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.559550012227928e-4
allele num: 8178
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.824567596187787e-5
allele num: 11332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 2.162428e6

QD
type: SiteQuality
SIO_000300: 1.327e1

MQ
type: SiteQuality
SIO_000300: 5.828e1

MQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

FS
type: SiteQuality
SIO_000300: 3.189e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

VQSLOD
type: SiteQuality
SIO_000300: -3.062e0

GenotypeQuality
all individuals: 1554
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10441
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.180469715698394e-5
allele num: 16180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 2.153166e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 1.474e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.624e0

QD
type: SiteQuality
SIO_000300: 1.425e1

GenotypeQuality
all individuals: 435
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
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variant carriers: 0

GenotypeQuality
all individuals: 3995
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4312
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3571
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.157635467980296e-4
allele num: 8120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.424877124224999e-5
allele num: 62258
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.624e0

FS
type: SiteQuality
SIO_000300: 1.474e0

QD
type: SiteQuality
SIO_000300: 1.425e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

DP
type: SiteQuality
SIO_000300: 2.153166e6

GenotypeQuality
all individuals: 6857
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3571
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10441
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.60621928105625e-5
allele num: 62258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

FS
type: SiteQuality
SIO_000300: 1.474e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.425e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 2.153166e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.624e0

GenotypeQuality
all individuals: 420
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 13003
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1341
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3550
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2135
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12012
bin: 9.75e1
variant carriers: 1832

GenotypeQuality
all individuals: 328
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1651
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4277
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 394
bin: 5.25e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 1263
allele frequency: 1.970235866716586e-2
allele num: 64104
num of homozygotes: 13

South Asian
type: Population
allele count: 65
allele frequency: 3.99704833353831e-3
allele num: 16262
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.236093943139679e-4
allele num: 8090
num of homozygotes: 0

Latino
type: Population
allele count: 82
allele frequency: 7.269503546099291e-3
allele num: 11280
num of homozygotes: 0

Other
type: Population
allele count: 17
allele frequency: 1.905829596412556e-2
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 231
allele frequency: 2.520733304233959e-2
allele num: 9164
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 237
allele frequency: 3.601823708206687e-2
allele num: 6580
num of homozygotes: 5

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQ
type: SiteQuality
SIO_000300: 6.02e1

QD
type: SiteQuality
SIO_000300: 1.504e1

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

DP
type: SiteQuality
SIO_000300: 2.195799e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.159e0

GenotypeQuality
all individuals: 1341
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3649
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3975
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.559965056782728e-5
allele num: 64104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.504e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.195799e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

MQ
type: SiteQuality
SIO_000300: 6.02e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.159e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

GenotypeQuality
all individuals: 449
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10856
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 14158
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4523
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 27
allele frequency: 1.645338208409506e-3
allele num: 16410
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.091094556582486e-5
allele num: 64702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.166218e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: -1.039e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e-1

QD
type: SiteQuality
SIO_000300: 3.042e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.921e0

GenotypeQuality
all individuals: 235
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10828
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1400
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13538
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.643819076808767e-5
allele num: 64602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.724480893386844e-5
allele num: 11462
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.003e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e0

DP
type: SiteQuality
SIO_000300: 2.156744e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
SIO_000300: 2.679e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.168e0

QD
type: SiteQuality
SIO_000300: 1.737e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

GenotypeQuality
all individuals: 7107
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3880
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1400
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547939692269589e-5
allele num: 64602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.737e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e0

DP
type: SiteQuality
SIO_000300: 2.156744e6

FS
type: SiteQuality
SIO_000300: 2.679e0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.168e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: -1.003e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 2126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4044
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10244
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9535
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.971828458639871e-5
allele num: 11146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.088e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-1

FS
type: SiteQuality
SIO_000300: 3.893e0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.439e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.898e1

QD
type: SiteQuality
SIO_000300: 1.147e1

DP
type: SiteQuality
SIO_000300: 2.080746e6

GenotypeQuality
all individuals: 1073
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3962
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4044
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.2482836100362e-4
allele num: 16022
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.8e-1

FS
type: SiteQuality
SIO_000300: 3.893e0

DP
type: SiteQuality
SIO_000300: 2.080746e6

MQ
type: SiteQuality
SIO_000300: 5.898e1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.439e0

QD
type: SiteQuality
SIO_000300: 1.147e1

GenotypeQuality
all individuals: 2069
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1823
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1099
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2781
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9285
bin: 9.75e1
variant carriers: 6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.515719801434088e-4
allele num: 14504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.773993258825617e-5
allele num: 56370
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.31e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.027e0

DP
type: SiteQuality
SIO_000300: 2.060449e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 6.14e0

MQRankSum
type: SiteQuality
SIO_000300: -8.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.552e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.609e0

FS
type: SiteQuality
SIO_000300: 1.0252e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6640
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 452
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

VQSLOD
type: SiteQuality
SIO_000300: -4.528e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.935627e6

FS
type: SiteQuality
SIO_000300: 1.709e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.111e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

QD
type: SiteQuality
SIO_000300: 1.647e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

GenotypeQuality
all individuals: 461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38673
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6637
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.865824782951855e-5
allele num: 10136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.011e0

VQSLOD
type: SiteQuality
SIO_000300: -8.531e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

DP
type: SiteQuality
SIO_000300: 1.937059e6

QD
type: SiteQuality
SIO_000300: 1.859e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6636
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8244
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.978367062107466e-4
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

FS
type: SiteQuality
SIO_000300: 2.546e0

DP
type: SiteQuality
SIO_000300: 1.938591e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6634
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.119951040391676e-4
allele num: 11438
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.93911e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.03e0

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.103e0

GenotypeQuality
all individuals: 498
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51372952680815e-5
allele num: 66062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.087e0

DP
type: SiteQuality
SIO_000300: 1.939544e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6630
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.724300762804214e-4
allele num: 66072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 1.525e0

QD
type: SiteQuality
SIO_000300: 1.165e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.941067e6

VQSLOD
type: SiteQuality
SIO_000300: 3.21e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e0

GenotypeQuality
all individuals: 829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513500423780119e-5
allele num: 66072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 9.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.939858e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39100
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8252
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.089392278650591e-5
allele num: 16422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.323e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.137e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 6.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 1.940198e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.628e0

GenotypeQuality
all individuals: 1702
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39144
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.301e1

FS
type: SiteQuality
SIO_000300: 1.466e0

DP
type: SiteQuality
SIO_000300: 1.940595e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.17e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

MQRankSum
type: SiteQuality
SIO_000300: 9.99e-1

GenotypeQuality
all individuals: 513
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8251
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6615
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.360000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.940775e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

QD
type: SiteQuality
SIO_000300: 1.213e1

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8250
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6614
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512996641147457e-5
allele num: 66094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.071e0

DP
type: SiteQuality
SIO_000300: 1.940821e6

VQSLOD
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 1.046e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.478e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.403e1

MQRankSum
type: SiteQuality
SIO_000300: -4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6614
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 495
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51290508033526e-5
allele num: 66098
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.941426e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.238e0

QD
type: SiteQuality
SIO_000300: 1.128e1

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6614
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
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GenotypeQuality
all individuals: 8249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51290508033526e-5
allele num: 66098
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.128e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.238e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 1.941426e6

GenotypeQuality
all individuals: 8249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6614
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.077430482011558e-5
allele num: 66098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.128e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.238e0

DP
type: SiteQuality
SIO_000300: 1.941426e6

GenotypeQuality
all individuals: 816
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8239
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 488
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 326
allele frequency: 3.212455656286953e-2
allele num: 10148
num of homozygotes: 6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.04602510460251e-3
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.052352852171281e-5
allele num: 66090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.756e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

QD
type: SiteQuality
SIO_000300: 1.22e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

DP
type: SiteQuality
SIO_000300: 1.959012e6

VQSLOD
type: SiteQuality
SIO_000300: 6.61e0

GenotypeQuality
all individuals: 1141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39315
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513454611496201e-5
allele num: 66074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.645e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.103e1

FS
type: SiteQuality
SIO_000300: 2.983e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.934621e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

GenotypeQuality
all individuals: 492
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6394
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.729050279329609e-5
allele num: 11456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.02672599049608e-5
allele num: 66078
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

FS
type: SiteQuality
SIO_000300: 5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.81e-1

DP
type: SiteQuality
SIO_000300: 1.934725e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.403e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39341
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6392
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.043584124665206e-4
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

QD
type: SiteQuality
SIO_000300: 1.359e1

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

FS
type: SiteQuality
SIO_000300: 2.721e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.934417e6

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6387
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1136
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39295
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66032
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 1.0295e1

DP
type: SiteQuality
SIO_000300: 1.933621e6

QD
type: SiteQuality
SIO_000300: 1.938e1

VQSLOD
type: SiteQuality
SIO_000300: -1.536e0

MQRankSum
type: SiteQuality
SIO_000300: 7.69e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

GenotypeQuality
all individuals: 6385
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.218472036066772e-4
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514417252241338e-5
allele num: 66032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.454e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.933496e6

QD
type: SiteQuality
SIO_000300: 9.76e0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39288
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8271
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.374e1

DP
type: SiteQuality
SIO_000300: 1.932528e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6375
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 39261
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 33
allele frequency: 3.838994881340158e-3
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66002
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.217e1

DP
type: SiteQuality
SIO_000300: 1.932833e6

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6342
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65938
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.776549060909251e-5
allele num: 11394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.928753e6

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 8.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

GenotypeQuality
all individuals: 756
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6340
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65936
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.71e-1

FS
type: SiteQuality
SIO_000300: 6.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.928772e6

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.54e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.479e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

GenotypeQuality
all individuals: 1713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0