4-87679941-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87679941
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87679941
    reference: chr 4
allele count: 1
allele frequency: 8.299030673217368e-6
allele num: 120496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3364+3A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.117+3A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3421+3A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2848+3A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3421+3A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3421+3A>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4365
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 8
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genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23080
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
hgvs: c.3421+3A>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

4-87679947-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87679947
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87679947
    reference: chr 4
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3421+9C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3364+9C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3421+9C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.117+9C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3421+9C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2848+9C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
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genotype depth: GenotypeDepth
  all individuals: 319
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 521
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2365
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4883
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

4-87679952-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87679952
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87679952
    reference: chr 4
allele count: 1
allele frequency: 8.307027745472669e-6
allele num: 120380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3421+14T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3421+14T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.117+14T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2848+14T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3421+14T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3364+14T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12401
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 550
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

4-87679957-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87679957
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87679957
    reference: chr 4
allele count: 1
allele frequency: 8.314763694415805e-6
allele num: 120268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2848+19G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3421+19G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3364+19G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3421+19G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.117+19G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3421+19G>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23070
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-87679962-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87679962
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87679962
    reference: chr 4
allele count: 40
allele frequency: 3.326292680492957e-4
allele num: 120254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3421+24C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.117+24C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2848+24C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3421+24C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3421+24C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3364+24C>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10333
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10783
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11625
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23094
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

4-87679977-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87679977
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87679977
    reference: chr 4
allele count: 5
allele frequency: 4.164653750687168e-5
allele num: 120058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3421+39C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3421+39C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3364+39C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2848+39C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3421+39C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.117+39C>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23090
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

4-87679977-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87679977
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87679977
    reference: chr 4
allele count: 1
allele frequency: 8.329307501374335e-6
allele num: 120058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3364+39C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3421+39C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2848+39C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3421+39C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3421+39C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.117+39C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23090
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-87679979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87679979
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87679979
    reference: chr 4
allele count: 1
allele frequency: 8.329168748958854e-6
allele num: 120060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2848+41G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.117+41G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3421+41G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3421+41G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3364+41G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3421+41G>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP

4-87679981-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87679981
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87679981
    reference: chr 4
allele count: 1
allele frequency: 8.334166750008334e-6
allele num: 119988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3364+43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3421+43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3421+43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.117+43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3421+43C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2848+43C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10398
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

4-87680048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680048
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680048
    reference: chr 4
allele count: 1
allele frequency: 8.353381448810478e-6
allele num: 119712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-47T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-47T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-47T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-47T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-47T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-47T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
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genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38466
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 459
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

4-87680053-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680053
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680053
    reference: chr 4
allele count: 1
allele frequency: 8.355196096452384e-6
allele num: 119686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-42G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-42G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-42G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-42G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-42G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-42G>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1073
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-87680055-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680055
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680055
    reference: chr 4
allele count: 1
allele frequency: 8.352404657300837e-6
allele num: 119726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-40A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-40A>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9306
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

4-87680057-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680057
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680057
    reference: chr 4
allele count: 1
allele frequency: 8.357989402069439e-6
allele num: 119646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-38C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-38C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-38C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-38C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-38C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-38C>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7451
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39131
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

4-87680061-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680061
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680061
    reference: chr 4
allele count: 1
allele frequency: 8.351567589236499e-6
allele num: 119738
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-34G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-34G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-34G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-34G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-34G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-34G>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 4577
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 392
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genotype quality: GenotypeQuality
  all individuals: 673
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1001
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genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

4-87680062-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680062
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680062
    reference: chr 4
allele count: 1
allele frequency: 8.349893956346754e-6
allele num: 119762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-33T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-33T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-33T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-33T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-33T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-33T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
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genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 386
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1841
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 39535
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genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

4-87680063-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680063
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680063
    reference: chr 4
allele count: 1
allele frequency: 8.348639171814994e-6
allele num: 119780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-32T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-32T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-32T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-32T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-32T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-32T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7478
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

4-87680064-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680064
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680064
    reference: chr 4
allele count: 2
allele frequency: 1.669811478284102e-5
allele num: 119774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-31G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-31G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-31G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-31G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-31G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-31G>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9306
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12436
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7477
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

4-87680067-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680067
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680065
    reference: chr 4
allele count: 1
allele frequency: 8.349336227769892e-6
allele num: 119770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-25_3422-24delAA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-25_3422-24delAA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-25_3422-24delAA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-25_3365-24delAA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-25_2849-24delAA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-25_118-24delAA
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4576
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: GAA
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

4-87680072-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680072
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680072
    reference: chr 4
allele count: 1
allele frequency: 8.345712807330875e-6
allele num: 119822
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-23T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-23T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-23T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-23T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-23T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-23T>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4576
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

4-87680083-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680083
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680084
    reference: chr 4
allele count: 1
allele frequency: 8.336112037345782e-6
allele num: 119960
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-11dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-11dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-11dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-11dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-11dupT
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-11dupT
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13355
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4576
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/4-87680085-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680085
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680085
    reference: chr 4
allele count: 1
allele frequency: 8.331389342486753e-6
allele num: 120028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-10A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-10A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-10A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-10A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-10A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-10A>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

4-87680092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680092
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680092
    reference: chr 4
allele count: 1
allele frequency: 8.327088017320342e-6
allele num: 120090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3365-3C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2849-3C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3422-3C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3422-3C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3422-3C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.118-3C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4576
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
hgvs: c.3422-3C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

4-87680101-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680101
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680101
    reference: chr 4
allele count: 8
allele frequency: 6.646836936472856e-5
allele num: 120358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3428G>A
  hgvsp: ENSP00000426626.1:p.Arg1143His
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3428G>A
  hgvsp: ENSP00000407249.2:p.Arg1143His
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3371G>A
  hgvsp: ENSP00000408368.2:p.Arg1124His
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.124G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2855G>A
  hgvsp: ENSP00000322675.6:p.Arg952His
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3428G>A
  hgvsp: ENSP00000394794.1:p.Arg1143His
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42086
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg1143His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum

4-87680108-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680108
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680108
    reference: chr 4
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3435A>G
  hgvsp: ENSP00000407249.2:p.Ile1145Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3378A>G
  hgvsp: ENSP00000408368.2:p.Ile1126Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3435A>G
  hgvsp: ENSP00000394794.1:p.Ile1145Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2862A>G
  hgvsp: ENSP00000322675.6:p.Ile954Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3435A>G
  hgvsp: ENSP00000426626.1:p.Ile1145Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.131A>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile1145Met
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/4-87680110-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680110
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680110
    reference: chr 4
allele count: 1
allele frequency: 8.302613662781043e-6
allele num: 120444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3437C>A
  hgvsp: ENSP00000426626.1:p.Ser1146Tyr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2864C>A
  hgvsp: ENSP00000322675.6:p.Ser955Tyr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3437C>A
  hgvsp: ENSP00000394794.1:p.Ser1146Tyr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.133C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3437C>A
  hgvsp: ENSP00000407249.2:p.Ser1146Tyr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3380C>A
  hgvsp: ENSP00000408368.2:p.Ser1127Tyr
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42306
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser1146Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/4-87680116-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680116
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680116
    reference: chr 4
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3443A>C
  hgvsp: ENSP00000394794.1:p.Asn1148Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.139A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2870A>C
  hgvsp: ENSP00000322675.6:p.Asn957Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3443A>C
  hgvsp: ENSP00000407249.2:p.Asn1148Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3386A>C
  hgvsp: ENSP00000408368.2:p.Asn1129Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3443A>C
  hgvsp: ENSP00000426626.1:p.Asn1148Thr
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn1148Thr
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

4-87680117-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680117
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680117
    reference: chr 4
allele count: 11
allele frequency: 9.127267296171526e-5
allele num: 120518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.140T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3444T>C
  hgvsp: ENST00000411767.2:c.3444T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3387T>C
  hgvsp: ENST00000427191.2:c.3387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3444T>C
  hgvsp: ENST00000436978.1:c.3444T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2871T>C
  hgvsp: ENST00000316707.6:c.2871T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3444T>C
  hgvsp: ENST00000511467.1:c.3444T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9433
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4572
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn1148Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

4-87680119-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680119
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680119
    reference: chr 4
allele count: 1
allele frequency: 8.296689620841284e-6
allele num: 120530
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3389G>C
  hgvsp: ENSP00000408368.2:p.Ser1130Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.142G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3446G>C
  hgvsp: ENSP00000426626.1:p.Ser1149Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3446G>C
  hgvsp: ENSP00000407249.2:p.Ser1149Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3446G>C
  hgvsp: ENSP00000394794.1:p.Ser1149Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2873G>C
  hgvsp: ENSP00000322675.6:p.Ser958Thr
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4562
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42444
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser1149Thr
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

4-87680121-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680121
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680121
    reference: chr 4
allele count: 1
allele frequency: 8.29655195300833e-6
allele num: 120532
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3448G>A
  hgvsp: ENSP00000394794.1:p.Val1150Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2875G>A
  hgvsp: ENSP00000322675.6:p.Val959Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3448G>A
  hgvsp: ENSP00000407249.2:p.Val1150Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3391G>A
  hgvsp: ENSP00000408368.2:p.Val1131Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3448G>A
  hgvsp: ENSP00000426626.1:p.Val1150Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.144G>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7648
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val1150Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

4-87680125-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680125
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680125
    reference: chr 4
allele count: 1
allele frequency: 8.296001327360212e-6
allele num: 120540
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3452G>C
  hgvsp: ENSP00000426626.1:p.Ser1151Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3452G>C
  hgvsp: ENSP00000394794.1:p.Ser1151Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3395G>C
  hgvsp: ENSP00000408368.2:p.Ser1132Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.148G>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3452G>C
  hgvsp: ENSP00000407249.2:p.Ser1151Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2879G>C
  hgvsp: ENSP00000322675.6:p.Ser960Thr
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser1151Thr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

4-87680142-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680142
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680142
    reference: chr 4
allele count: 1
allele frequency: 8.297515723792297e-6
allele num: 120518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3469C>T
  hgvsp: ENSP00000426626.1:p.His1157Tyr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3469C>T
  hgvsp: ENSP00000407249.2:p.His1157Tyr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2896C>T
  hgvsp: ENSP00000322675.6:p.His966Tyr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.165C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3412C>T
  hgvsp: ENSP00000408368.2:p.His1138Tyr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3469C>T
  hgvsp: ENSP00000394794.1:p.His1157Tyr
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42501
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His1157Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-87680146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680146
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680146
    reference: chr 4
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3416A>G
  hgvsp: ENSP00000408368.2:p.His1139Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3473A>G
  hgvsp: ENSP00000426626.1:p.His1158Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3473A>G
  hgvsp: ENSP00000407249.2:p.His1158Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.169A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3473A>G
  hgvsp: ENSP00000394794.1:p.His1158Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2900A>G
  hgvsp: ENSP00000322675.6:p.His967Arg
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42523
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His1158Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

4-87680153-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680153
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680153
    reference: chr 4
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3480A>G
  hgvsp: ENST00000436978.1:c.3480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2907A>G
  hgvsp: ENST00000316707.6:c.2907A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3480A>G
  hgvsp: ENST00000511467.1:c.3480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3480A>G
  hgvsp: ENST00000411767.2:c.3480A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3423A>G
  hgvsp: ENST00000427191.2:c.3423A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.176A>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala1160Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

4-87680154-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680154
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680154
    reference: chr 4
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3481A>G
  hgvsp: ENSP00000394794.1:p.Ile1161Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3481A>G
  hgvsp: ENSP00000426626.1:p.Ile1161Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.177A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2908A>G
  hgvsp: ENSP00000322675.6:p.Ile970Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3481A>G
  hgvsp: ENSP00000407249.2:p.Ile1161Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3424A>G
  hgvsp: ENSP00000408368.2:p.Ile1142Val
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile1161Val
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

4-87680155-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680155
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680155
    reference: chr 4
allele count: 1
allele frequency: 8.302613662781043e-6
allele num: 120444
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3482T>C
  hgvsp: ENSP00000394794.1:p.Ile1161Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2909T>C
  hgvsp: ENSP00000322675.6:p.Ile970Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3482T>C
  hgvsp: ENSP00000426626.1:p.Ile1161Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.178T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3425T>C
  hgvsp: ENSP00000408368.2:p.Ile1142Thr
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3482T>C
  hgvsp: ENSP00000407249.2:p.Ile1161Thr
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42465
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile1161Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

4-87680155-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680155
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680155
    reference: chr 4
allele count: 1
allele frequency: 8.302613662781043e-6
allele num: 120444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3482T>G
  hgvsp: ENSP00000407249.2:p.Ile1161Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3482T>G
  hgvsp: ENSP00000394794.1:p.Ile1161Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3425T>G
  hgvsp: ENSP00000408368.2:p.Ile1142Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3482T>G
  hgvsp: ENSP00000426626.1:p.Ile1161Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2909T>G
  hgvsp: ENSP00000322675.6:p.Ile970Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.178T>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7625
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4550
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile1161Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

4-87680161-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680161
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680161
    reference: chr 4
allele count: 3
allele frequency: 2.490908185124296e-5
allele num: 120438
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3488T>G
  hgvsp: ENSP00000394794.1:p.Ile1163Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.184T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2915T>G
  hgvsp: ENSP00000322675.6:p.Ile972Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3431T>G
  hgvsp: ENSP00000408368.2:p.Ile1144Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3488T>G
  hgvsp: ENSP00000426626.1:p.Ile1163Ser
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3488T>G
  hgvsp: ENSP00000407249.2:p.Ile1163Ser
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9385
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4546
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42505
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile1163Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/4-87680174-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680174
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680174
    reference: chr 4
allele count: 1
allele frequency: 8.313519445321983e-6
allele num: 120286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2928A>C
  hgvsp: ENST00000316707.6:c.2928A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.197A>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3501A>C
  hgvsp: ENST00000511467.1:c.3501A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3501A>C
  hgvsp: ENST00000436978.1:c.3501A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3501A>C
  hgvsp: ENST00000411767.2:c.3501A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3444A>C
  hgvsp: ENST00000427191.2:c.3444A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1167Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

4-87680174-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680174
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680174
    reference: chr 4
allele count: 1
allele frequency: 8.313519445321983e-6
allele num: 120286
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3501A>G
  hgvsp: ENST00000436978.1:c.3501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.197A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3444A>G
  hgvsp: ENST00000427191.2:c.3444A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3501A>G
  hgvsp: ENST00000411767.2:c.3501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2928A>G
  hgvsp: ENST00000316707.6:c.2928A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3501A>G
  hgvsp: ENST00000511467.1:c.3501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14053
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala1167Ala
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/4-87680176-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680176
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680176
    reference: chr 4
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3503C>A
  hgvsp: ENSP00000407249.2:p.Pro1168His
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2930C>A
  hgvsp: ENSP00000322675.6:p.Pro977His
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3503C>A
  hgvsp: ENSP00000394794.1:p.Pro1168His
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.199C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3446C>A
  hgvsp: ENSP00000408368.2:p.Pro1149His
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3503C>A
  hgvsp: ENSP00000426626.1:p.Pro1168His
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42389
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro1168His
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

4-87680177-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680177
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680177
    reference: chr 4
allele count: 1
allele frequency: 8.318637074501714e-6
allele num: 120212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3504T>G
  hgvsp: ENST00000411767.2:c.3504T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2931T>G
  hgvsp: ENST00000316707.6:c.2931T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3447T>G
  hgvsp: ENST00000427191.2:c.3447T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3504T>G
  hgvsp: ENST00000511467.1:c.3504T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3504T>G
  hgvsp: ENST00000436978.1:c.3504T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.200T>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1168Pro
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

4-87680184-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680184
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680184
    reference: chr 4
allele count: 7
allele frequency: 5.831000932960149e-5
allele num: 120048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2938G>A
  hgvsp: ENSP00000322675.6:p.Val980Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3511G>A
  hgvsp: ENSP00000394794.1:p.Val1171Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3454G>A
  hgvsp: ENSP00000408368.2:p.Val1152Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3511G>A
  hgvsp: ENSP00000407249.2:p.Val1171Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.207G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3511G>A
  hgvsp: ENSP00000426626.1:p.Val1171Met
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29646
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val1171Met
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

4-87680186-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680186
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680186
    reference: chr 4
allele count: 12
allele frequency: 9.999000099990002e-5
allele num: 120012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3513G>A
  hgvsp: ENST00000411767.2:c.3513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3456G>A
  hgvsp: ENST00000427191.2:c.3456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.209G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3513G>A
  hgvsp: ENST00000511467.1:c.3513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2940G>A
  hgvsp: ENST00000316707.6:c.2940G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3513G>A
  hgvsp: ENST00000436978.1:c.3513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val1171Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

4-87680191-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680191
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680191
    reference: chr 4
allele count: 2
allele frequency: 1.669895130585799e-5
allele num: 119768
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3461T>C
  hgvsp: ENSP00000408368.2:p.Leu1154Pro
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3518T>C
  hgvsp: ENSP00000426626.1:p.Leu1173Pro
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2945T>C
  hgvsp: ENSP00000322675.6:p.Leu982Pro
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3518T>C
  hgvsp: ENSP00000394794.1:p.Leu1173Pro
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3518T>C
  hgvsp: ENSP00000407249.2:p.Leu1173Pro
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.214T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4493
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu1173Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

4-87680198-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680198
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680198
    reference: chr 4
allele count: 1
allele frequency: 8.381667616588997e-6
allele num: 119308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3468C>G
  hgvsp: ENSP00000408368.2:p.Ile1156Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3525C>G
  hgvsp: ENSP00000426626.1:p.Ile1175Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3525C>G
  hgvsp: ENSP00000407249.2:p.Ile1175Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2952C>G
  hgvsp: ENSP00000322675.6:p.Ile984Met
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.221C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3525C>G
  hgvsp: ENSP00000394794.1:p.Ile1175Met
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile1175Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-87680216-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680216
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680216
    reference: chr 4
allele count: 1
allele frequency: 8.594166279929183e-6
allele num: 116358
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3543G>T
  hgvsp: ENSP00000394794.1:p.Lys1181Asn
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2970G>T
  hgvsp: ENSP00000322675.6:p.Lys990Asn
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.239G>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3486G>T
  hgvsp: ENSP00000408368.2:p.Lys1162Asn
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3543G>T
  hgvsp: ENSP00000407249.2:p.Lys1181Asn
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3543G>T
  hgvsp: ENSP00000426626.1:p.Lys1181Asn
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38775
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4445
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys1181Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

4-87680217-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680217
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680217
    reference: chr 4
allele count: 1
allele frequency: 8.593870851308846e-6
allele num: 116362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2971A>G
  hgvsp: ENSP00000322675.6:p.Ile991Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3544A>G
  hgvsp: ENSP00000426626.1:p.Ile1182Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.240A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3544A>G
  hgvsp: ENSP00000407249.2:p.Ile1182Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3487A>G
  hgvsp: ENSP00000408368.2:p.Ile1163Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3544A>G
  hgvsp: ENSP00000394794.1:p.Ile1182Val
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39095
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile1182Val
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum

4-87680220-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680220
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680220
    reference: chr 4
allele count: 1
allele frequency: 8.658008658008657e-6
allele num: 115500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3490T>C
  hgvsp: ENSP00000408368.2:p.Ser1164Pro
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3547T>C
  hgvsp: ENSP00000426626.1:p.Ser1183Pro
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.243T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3547T>C
  hgvsp: ENSP00000394794.1:p.Ser1183Pro
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2974T>C
  hgvsp: ENSP00000322675.6:p.Ser992Pro
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3547T>C
  hgvsp: ENSP00000407249.2:p.Ser1183Pro
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser1183Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

4-87680230-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680230
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680230
    reference: chr 4
allele count: 1
allele frequency: 8.901231930499181e-6
allele num: 112344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+4A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+4A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+4A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+4A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+4A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+4A>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3875
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32783
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
hgvs: c.3553+4A>T
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

4-87680241-TCTTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680241
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680237
    reference: chr 4
allele count: 4
allele frequency: 3.665017408832692e-5
allele num: 109140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+20_3553+23delCTTA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+20_3553+23delCTTA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+20_249+23delCTTA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+20_2980+23delCTTA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+20_3553+23delCTTA
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+20_3496+23delCTTA
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14532
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17011
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4426
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: TCTTA
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum

4-87680242-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680242
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680242
    reference: chr 4
allele count: 2
allele frequency: 1.839858698851928e-5
allele num: 108704
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+16C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+16C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+16C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+16C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+16C>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+16C>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15263
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3904
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

4-87680246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680246
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680246
    reference: chr 4
allele count: 1
allele frequency: 9.323140033563304e-6
allele num: 107260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+20C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+20C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+20C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+20C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+20C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+20C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12743
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3070
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

4-87680250-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680250
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680250
    reference: chr 4
allele count: 1
allele frequency: 9.377168470208736e-6
allele num: 106642
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+24T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+24T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6032
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19490
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3387
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16068
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6121
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 911
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

4-87680253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680253
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680253
    reference: chr 4
allele count: 56
allele frequency: 5.290605396417505e-4
allele num: 105848
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+27A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+27A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+27A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+27A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+27A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+27A>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20230
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8569
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9497
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4022
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4469
  bin: 9.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 6889
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

4-87680253-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680253
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680253
    reference: chr 4
allele count: 1
allele frequency: 9.44750963645983e-6
allele num: 105848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+27A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+27A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+27A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+27A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+27A>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+27A>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8569
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4022
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13243
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

4-87680258-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680258
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680258
    reference: chr 4
allele count: 1
allele frequency: 9.565899481528247e-6
allele num: 104538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+32G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+32G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+32G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+32G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+32G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+32G>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16280
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5357
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

4-87680261-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680261
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680261
    reference: chr 4
allele count: 2
allele frequency: 1.930315606601679e-5
allele num: 103610
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+35T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+35T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+35T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+35T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+35T>C
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+35T>C
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8024
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5462
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

4-87680266-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87680266
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87680266
    reference: chr 4
allele count: 1
allele frequency: 9.874202658135355e-6
allele num: 101274
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2980+40T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.249+40T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3553+40T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3496+40T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3553+40T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3553+40T>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5602
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS

4-87683833-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683833
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683833
    reference: chr 4
allele count: 90
allele frequency: 8.148188386115487e-4
allele num: 110454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.250-47C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3554-47C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3554-47C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2981-47C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3554-47C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3497-47C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6931
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 2
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-87683834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683834
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683834
    reference: chr 4
allele count: 3
allele frequency: 2.714342586225616e-5
allele num: 110524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3554-46G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.250-46G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2981-46G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3554-46G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3554-46G>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3497-46G>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8338
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
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genotype depth: GenotypeDepth
  all individuals: 287
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 120
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 442
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genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

4-87683836-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683836
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683836
    reference: chr 4
allele count: 2
allele frequency: 1.808220168887764e-5
allele num: 110606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3497-44G>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3554-44G>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3554-44G>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3554-44G>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2981-44G>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.250-44G>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6870
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 287
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genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

4-87683840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683840
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683840
    reference: chr 4
allele count: 1
allele frequency: 9.033097268391387e-6
allele num: 110704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2981-40C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3497-40C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3554-40C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3554-40C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.250-40C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3554-40C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-87683842-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683842
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683842
    reference: chr 4
allele count: 1
allele frequency: 9.027063135279568e-6
allele num: 110778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3554-38C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3497-38C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3554-38C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.250-38C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2981-38C>A
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3554-38C>A
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3107
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3622
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

4-87683848-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683848
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683848
    reference: chr 4
allele count: 1
allele frequency: 9.002034459787913e-6
allele num: 111086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.250-32T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3554-32T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3497-32T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3554-32T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2981-32T>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3554-32T>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29065
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5984
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

4-87683858-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683858
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683858
    reference: chr 4
allele count: 1
allele frequency: 8.936071345593623e-6
allele num: 111906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.250-22A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3554-22A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3554-22A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2981-22A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3554-22A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3497-22A>G
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6896
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3667
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29093
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

4-87683888-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683888
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683888
    reference: chr 4
allele count: 1
allele frequency: 8.548469823901522e-6
allele num: 116980
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.258A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3505A>G
  hgvsp: ENSP00000408368.2:p.Thr1169Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3562A>G
  hgvsp: ENSP00000426626.1:p.Thr1188Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3562A>G
  hgvsp: ENSP00000407249.2:p.Thr1188Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3562A>G
  hgvsp: ENSP00000394794.1:p.Thr1188Ala
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2989A>G
  hgvsp: ENSP00000322675.6:p.Thr997Ala
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1188Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

4-87683889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683889
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683889
    reference: chr 4
allele count: 174
allele frequency: 1.485123162800225e-3
allele num: 117162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2990C>T
  hgvsp: ENSP00000322675.6:p.Thr997Ile
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3563C>T
  hgvsp: ENSP00000407249.2:p.Thr1188Ile
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.259C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3563C>T
  hgvsp: ENSP00000394794.1:p.Thr1188Ile
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3563C>T
  hgvsp: ENSP00000426626.1:p.Thr1188Ile
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3506C>T
  hgvsp: ENSP00000408368.2:p.Thr1169Ile
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9718
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 9.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7944
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Thr1188Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

4-87683898-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683898
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683898
    reference: chr 4
allele count: 1
allele frequency: 8.424883736604435e-6
allele num: 118696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3515A>G
  hgvsp: ENSP00000408368.2:p.His1172Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3572A>G
  hgvsp: ENSP00000407249.2:p.His1191Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3572A>G
  hgvsp: ENSP00000394794.1:p.His1191Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.268A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3572A>G
  hgvsp: ENSP00000426626.1:p.His1191Arg
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.2999A>G
  hgvsp: ENSP00000322675.6:p.His1000Arg
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29223
  bin: 9.75e1
  variant carriers: 1
hgvs: p.His1191Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

4-87683900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683900
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683900
    reference: chr 4
allele count: 1
allele frequency: 8.41651657212113e-6
allele num: 118814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3517C>T
  hgvsp: ENSP00000408368.2:p.Leu1173Phe
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.3001C>T
  hgvsp: ENSP00000322675.6:p.Leu1001Phe
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3574C>T
  hgvsp: ENSP00000394794.1:p.Leu1192Phe
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3574C>T
  hgvsp: ENSP00000426626.1:p.Leu1192Phe
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3574C>T
  hgvsp: ENSP00000407249.2:p.Leu1192Phe
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.270C>T
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu1192Phe
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

4-87683904-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683904
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683904
    reference: chr 4
allele count: 1
allele frequency: 8.392359595823962e-6
allele num: 119156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.3005C>T
  hgvsp: ENSP00000322675.6:p.Thr1002Ile
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3521C>T
  hgvsp: ENSP00000408368.2:p.Thr1174Ile
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.274C>T
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3578C>T
  hgvsp: ENSP00000407249.2:p.Thr1193Ile
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3578C>T
  hgvsp: ENSP00000394794.1:p.Thr1193Ile
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3578C>T
  hgvsp: ENSP00000426626.1:p.Thr1193Ile
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3944
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr1193Ile
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

4-87683922-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683922
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683922
    reference: chr 4
allele count: 1
allele frequency: 8.310893919750009e-6
allele num: 120324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3539A>G
  hgvsp: ENSP00000408368.2:p.Tyr1180Cys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.292A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3596A>G
  hgvsp: ENSP00000407249.2:p.Tyr1199Cys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.3023A>G
  hgvsp: ENSP00000322675.6:p.Tyr1008Cys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3596A>G
  hgvsp: ENSP00000394794.1:p.Tyr1199Cys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3596A>G
  hgvsp: ENSP00000426626.1:p.Tyr1199Cys
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr1199Cys
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

4-87683940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683940
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683940
    reference: chr 4
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.3041A>G
  hgvsp: ENSP00000322675.6:p.Tyr1014Cys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3557A>G
  hgvsp: ENSP00000408368.2:p.Tyr1186Cys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3614A>G
  hgvsp: ENSP00000426626.1:p.Tyr1205Cys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3614A>G
  hgvsp: ENSP00000394794.1:p.Tyr1205Cys
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.310A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3614A>G
  hgvsp: ENSP00000407249.2:p.Tyr1205Cys
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29268
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr1205Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

4-87683942-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 87683942
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 87683942
    reference: chr 4
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000322675
  ensembl transcript: ENST00000316707
  gene symbol: PTPN13
  hgvsc: ENST00000316707.6:c.3043A>G
  hgvsp: ENSP00000322675.6:p.Met1015Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000394794
  ensembl transcript: ENST00000436978
  gene symbol: PTPN13
  hgvsc: ENST00000436978.1:c.3616A>G
  hgvsp: ENSP00000394794.1:p.Met1206Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000426626
  ensembl transcript: ENST00000511467
  gene symbol: PTPN13
  hgvsc: ENST00000511467.1:c.3616A>G
  hgvsp: ENSP00000426626.1:p.Met1206Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000407249
  ensembl transcript: ENST00000411767
  gene symbol: PTPN13
  hgvsc: ENST00000411767.2:c.3616A>G
  hgvsp: ENSP00000407249.2:p.Met1206Val
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163629
  ensembl transcript: ENST00000508063
  gene symbol: PTPN13
  hgvsc: ENST00000508063.1:n.312A>G
  variant of: http://identifiers.org/hgnc/9646
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163629
  ensembl protein: ENSP00000408368
  ensembl transcript: ENST00000427191
  gene symbol: PTPN13
  hgvsc: ENST00000427191.2:c.3559A>G
  hgvsp: ENSP00000408368.2:p.Met1187Val
  variant of: http://identifiers.org/hgnc/9646
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Met1206Val
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 255
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.49e-1

MQ
type: SiteQuality
SIO_000300: 5.393e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-3

DP
type: SiteQuality
SIO_000300: 2.282912e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

FS
type: SiteQuality
SIO_000300: 1.923e0

QD
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.411e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
all individuals: 14017
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2672
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4358
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 7.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

DP
type: SiteQuality
SIO_000300: 2.28119e6

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.278719e6

FS
type: SiteQuality
SIO_000300: 3.698e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -5.061e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 4159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2365
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.155e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

DP
type: SiteQuality
SIO_000300: 2.275177e6

MQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

FS
type: SiteQuality
SIO_000300: 4.825e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.472e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
all individuals: 468
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4150
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 35
allele frequency: 3.575076608784474e-3
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.481894150417827e-4
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503171692270691e-5
allele num: 66526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.012e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

DP
type: SiteQuality
SIO_000300: 2.273996e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.579e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3672
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.458512599877074e-4
allele num: 16270
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

QD
type: SiteQuality
SIO_000300: 1.91e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

FS
type: SiteQuality
SIO_000300: 1.354e0

VQSLOD
type: SiteQuality
SIO_000300: -6.493e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.264574e6

GenotypeQuality
all individuals: 4702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.146281499692685e-5
allele num: 16270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

DP
type: SiteQuality
SIO_000300: 2.264574e6

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

QD
type: SiteQuality
SIO_000300: 1.91e1

FS
type: SiteQuality
SIO_000300: 1.354e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.493e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4720
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3674
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.387e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

FS
type: SiteQuality
SIO_000300: 7.253e0

DP
type: SiteQuality
SIO_000300: 2.263642e6

GenotypeQuality
all individuals: 2667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23102
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4706
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4355
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.264313e6

QD
type: SiteQuality
SIO_000300: 1.268e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 3.691e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.414e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.808e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

GenotypeQuality
all individuals: 747
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.284565108094519e-5
allele num: 15912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.028e0

QD
type: SiteQuality
SIO_000300: 1.58e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.615e0

DP
type: SiteQuality
SIO_000300: 1.818746e6

MQ
type: SiteQuality
SIO_000300: 5.89e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: -2.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

FS
type: SiteQuality
SIO_000300: 1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
all individuals: 4581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.294058408862034e-5
allele num: 15888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.341e0

DP
type: SiteQuality
SIO_000300: 1.819759e6

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.252e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.473e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 39022
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7469
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15916
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.206e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.820305e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 1.862e1

MQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.113e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.002e0

GenotypeQuality
all individuals: 1841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.305170239596469e-5
allele num: 15860
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

QD
type: SiteQuality
SIO_000300: 1.903e1

DP
type: SiteQuality
SIO_000300: 1.821073e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

DP
type: SiteQuality
SIO_000300: 1.822907e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.113e0

ReadPosRankSum
type: SiteQuality
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QD
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.694e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505615947484116e-5
allele num: 66418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
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ClippingRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.915e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 9.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.423e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 391
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.270378730875344e-5
allele num: 15948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

MQ
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SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.22e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -8.819e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 1.824172e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66420
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.254705144291092e-4
allele num: 15940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

FS
type: SiteQuality
SIO_000300: 2.217e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

DP
type: SiteQuality
SIO_000300: 1.824928e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.362e0

DP
type: SiteQuality
SIO_000300: 1.826627e6

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.574e1

MQRankSum
type: SiteQuality
SIO_000300: -1.354e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

QD
type: SiteQuality
SIO_000300: 1.737e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15968
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.589e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.829698e6

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: -1.258e0

FS
type: SiteQuality
SIO_000300: 2.077e0

MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.043e1

MQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

East Asian
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num of homozygotes: 0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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MQ
type: SiteQuality
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

Other
type: Population
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.051556303328927e-4
allele num: 66568
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4573
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.85119e6

MQRankSum
type: SiteQuality
SIO_000300: -6.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.412e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

GenotypeQuality
all individuals: 457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4571
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e-1

DP
type: SiteQuality
SIO_000300: 1.851948e6

QD
type: SiteQuality
SIO_000300: 8.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.45e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42420
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variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.564e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

FS
type: SiteQuality
SIO_000300: 6.991e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

DP
type: SiteQuality
SIO_000300: 1.852887e6

GenotypeQuality
all individuals: 456
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
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variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.200804539041158e-4
allele num: 66622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.822378811809015e-4
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

FS
type: SiteQuality
SIO_000300: 2.414e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

DP
type: SiteQuality
SIO_000300: 1.853367e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

QD
type: SiteQuality
SIO_000300: 1.396e1

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1852
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 7641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.42e0

MQRankSum
type: SiteQuality
SIO_000300: -2.062e0

FS
type: SiteQuality
SIO_000300: 9.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

DP
type: SiteQuality
SIO_000300: 1.852873e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

QD
type: SiteQuality
SIO_000300: 1.428e1

GenotypeQuality
all individuals: 455
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4561
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 386
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.584e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.603e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.036e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 1.853012e6

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

FS
type: SiteQuality
SIO_000300: 2.287e0

VQSLOD
type: SiteQuality
SIO_000300: -2.344e-1

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.85322e6

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: -2.76e-2

FS
type: SiteQuality
SIO_000300: 1.157e0

QD
type: SiteQuality
SIO_000300: 1.082e1

DP
type: SiteQuality
SIO_000300: 1.853125e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.075e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 4.448e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

DP
type: SiteQuality
SIO_000300: 1.852967e6

QD
type: SiteQuality
SIO_000300: 1.618e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7624
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.099e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.098e0

QD
type: SiteQuality
SIO_000300: 9.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.294e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.852211e6

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 971
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.795e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 1.852068e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.019e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

DP
type: SiteQuality
SIO_000300: 1.851824e6

ClippingRankSum
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SIO_000300: 5.3e-2

QD
type: SiteQuality
SIO_000300: 1.432e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
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SIO_000300: 1.851824e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

QD
type: SiteQuality
SIO_000300: 1.432e1

BaseQRankSum
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SIO_000300: 3.68e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819505094614265e-4
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

FS
type: SiteQuality
SIO_000300: 3.908e0

VQSLOD
type: SiteQuality
SIO_000300: 8.68e-1

DP
type: SiteQuality
SIO_000300: 1.850742e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.165e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.382e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163873370577281e-4
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.161e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 1.845784e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.37e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.845784e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.001e0

QD
type: SiteQuality
SIO_000300: 1.161e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.844613e6

VQSLOD
type: SiteQuality
SIO_000300: -3.473e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e0

FS
type: SiteQuality
SIO_000300: 3.595e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 3.284e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.165e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.281e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.843692e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519756838905775e-4
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.038322487346348e-5
allele num: 66384
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.653e0

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.839124e6

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.52e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
all individuals: 1721
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.052077853761178e-3
allele num: 11406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 1.283e0

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

DP
type: SiteQuality
SIO_000300: 1.837667e6

GenotypeQuality
all individuals: 766
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7330
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 342
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510026576467746e-5
allele num: 66224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.782715615668365e-5
allele num: 11386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 1.831899e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.005e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4486
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7219
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515656734062869e-5
allele num: 65978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.965e0

MQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

DP
type: SiteQuality
SIO_000300: 1.820871e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 7.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.196e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.371049949031601e-5
allele num: 15696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

FS
type: SiteQuality
SIO_000300: 4.306e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-1

DP
type: SiteQuality
SIO_000300: 1.750499e6

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.98e-1

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4445
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553084425669379e-5
allele num: 64388
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 1.703e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

DP
type: SiteQuality
SIO_000300: 1.74957e6

QD
type: SiteQuality
SIO_000300: 1.635e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 5044
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4440
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5842
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37994
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.051303616484441e-4
allele num: 9512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63938
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: -8.786e-1

QD
type: SiteQuality
SIO_000300: 1.534e1

DP
type: SiteQuality
SIO_000300: 1.727328e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 4429
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604518323599255e-5
allele num: 62324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.628987e6

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.255e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 4025
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13814
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.785903329154478e-4
allele num: 14358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

MQ
type: SiteQuality
SIO_000300: 5.665e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.48113e6

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

QD
type: SiteQuality
SIO_000300: 1.28e1

FS
type: SiteQuality
SIO_000300: 3.071e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e-1

GenotypeQuality
all individuals: 895
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4424
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 143
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14244
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.164502164502165e-4
allele num: 9240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60376
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.003e1

DP
type: SiteQuality
SIO_000300: 1.465389e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 746
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4417
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.678584617450566e-5
allele num: 59574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.357e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

DP
type: SiteQuality
SIO_000300: 1.384787e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 2.0356e1

VQSLOD
type: SiteQuality
SIO_000300: -1.95e0

MQRankSum
type: SiteQuality
SIO_000300: -2.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

GenotypeQuality
all individuals: 594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4416
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 815
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.688105607886829e-5
allele num: 59238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

FS
type: SiteQuality
SIO_000300: 5.176e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.04e1

VQSLOD
type: SiteQuality
SIO_000300: 4.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.35007e6

GenotypeQuality
all individuals: 657
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1095
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16195
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 793
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 543
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7572
num of homozygotes: 0

Latino
type: Population
allele count: 54
allele frequency: 5.622657226155768e-3
allele num: 9604
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13688
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.525252525252525e-3
allele num: 792
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.316542e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

QD
type: SiteQuality
SIO_000300: 1.573e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 514
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6889
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4469
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.699870809818454e-5
allele num: 58828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13688
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 1.316542e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.573e1

GenotypeQuality
all individuals: 4784
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7567
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4412
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.720933434294762e-5
allele num: 58108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.21e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.153e0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.155e-1

DP
type: SiteQuality
SIO_000300: 1.282242e6

FS
type: SiteQuality
SIO_000300: 1.022e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 191
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4414
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.688172043010753e-4
allele num: 7440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57588
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.873e1

DP
type: SiteQuality
SIO_000300: 1.257593e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15016
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4413
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 653
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.77367860943597e-5
allele num: 56380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12788
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.043e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 1.226797e6

QD
type: SiteQuality
SIO_000300: 1.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 1.983e0

GenotypeQuality
all individuals: 2053
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29013
bin: 9.75e1
variant carriers: 85

African
type: Population
allele count: 78
allele frequency: 8.294342832837091e-3
allele num: 9404
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.498950314905528e-4
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.957261574990107e-4
allele num: 10108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.285157600326829e-5
allele num: 63642
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.576e0

FS
type: SiteQuality
SIO_000300: 1.437e0

DP
type: SiteQuality
SIO_000300: 2.219888e6

QD
type: SiteQuality
SIO_000300: 1.471e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

GenotypeQuality
all individuals: 425
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3461
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3269
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4563
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.061571125265393e-4
allele num: 9420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.25e-3
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570845114671693e-5
allele num: 63660
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

DP
type: SiteQuality
SIO_000300: 2.2227e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29018
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.749475157452764e-4
allele num: 11432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.735e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.226407e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.725e0

VQSLOD
type: SiteQuality
SIO_000300: -1.287e-1

GenotypeQuality
all individuals: 976
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568381430363864e-5
allele num: 63760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.916e0

QD
type: SiteQuality
SIO_000300: 1.674e1

DP
type: SiteQuality
SIO_000300: 2.232628e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.553e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 488
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3274
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567987957852484e-5
allele num: 63776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.16e-1

DP
type: SiteQuality
SIO_000300: 2.235859e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.247e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.464e0

QD
type: SiteQuality
SIO_000300: 1.416e1

GenotypeQuality
all individuals: 840
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3616
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3396
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3645
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63882
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176747469992939e-4
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9440
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.605e-1

DP
type: SiteQuality
SIO_000300: 2.243914e6

FS
type: SiteQuality
SIO_000300: 3.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.802e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.669e1

GenotypeQuality
all individuals: 3386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560013728120808e-5
allele num: 64102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.842e0

DP
type: SiteQuality
SIO_000300: 2.257642e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e0

VQSLOD
type: SiteQuality
SIO_000300: 6.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
type: SiteQuality
SIO_000300: 1.595e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 238
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3739
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3691
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.006726457399103e-5
allele num: 14272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
SIO_000300: 2.310106e6

MQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.09e0

FS
type: SiteQuality
SIO_000300: 3.651e0

QD
type: SiteQuality
SIO_000300: 1.639e1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e-1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2110
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3732
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 29228
bin: 9.75e1
variant carriers: 172

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.387347391786903e-3
allele num: 14416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 144
allele frequency: 2.200085558882845e-3
allele num: 65452
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.162089613875697e-4
allele num: 9686
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.314814814814815e-3
allele num: 864
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.947e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
type: SiteQuality
SIO_000300: 2.320258e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.361e0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

GenotypeQuality
all individuals: 9907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3663
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15384
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

DP
type: SiteQuality
SIO_000300: 2.335556e6

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

QD
type: SiteQuality
SIO_000300: 1.242e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

GenotypeQuality
all individuals: 29225
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9929
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3663
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.47332988089073e-5
allele num: 15448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.141e0

QD
type: SiteQuality
SIO_000300: 4.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

FS
type: SiteQuality
SIO_000300: 3.664e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

DP
type: SiteQuality
SIO_000300: 2.337517e6

VQSLOD
type: SiteQuality
SIO_000300: -2.418e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.49e-1

GenotypeQuality
all individuals: 29231
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3802
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513042425709617e-5
allele num: 66092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.856e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.978e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 4.3e-1

DP
type: SiteQuality
SIO_000300: 2.34217e6

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29252
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3793
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.356061e6

FS
type: SiteQuality
SIO_000300: 1.129e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.739e0

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10775
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.76e0

DP
type: SiteQuality
SIO_000300: 2.360737e6

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.452e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

FS
type: SiteQuality
SIO_000300: 3.227e0

MQ
type: SiteQuality
SIO_000300: 5.971e1