17-76676242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676242
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676242
    reference: chr 17
allele count: 1
allele frequency: 8.345016356232058e-6
allele num: 119832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.941+30C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.251+30C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1115+30C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.531+30C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4198C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.941+30C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1118+30C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1118+30C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*591+30C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.304+30C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

17-76676244-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676244
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676244
    reference: chr 17
allele count: 6
allele frequency: 5.00283493979922e-5
allele num: 119932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4200C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1115+28C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*591+28C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.304+28C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.941+28C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.251+28C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.941+28C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1118+28C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.531+28C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1118+28C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

17-76676249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676249
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676249
    reference: chr 17
allele count: 1
allele frequency: 8.316423272678886e-6
allele num: 120244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1118+23C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1115+23C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.304+23C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*591+23C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4205C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.941+23C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1118+23C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.941+23C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.531+23C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.251+23C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

17-76676254-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676254
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676254
    reference: chr 17
allele count: 1
allele frequency: 8.301510874979247e-6
allele num: 120460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1115+18A>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1118+18A>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.251+18A>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.941+18A>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.531+18A>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1118+18A>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.941+18A>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4210A>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*591+18A>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.304+18A>C
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41452
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-76676255-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676255
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676255
    reference: chr 17
allele count: 1
allele frequency: 8.299719469481931e-6
allele num: 120486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.251+17A>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1118+17A>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.941+17A>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.531+17A>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.941+17A>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1118+17A>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*591+17A>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4211A>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1115+17A>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.304+17A>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

17-76676256-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676256
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676256
    reference: chr 17
allele count: 1
allele frequency: 8.298066550493736e-6
allele num: 120510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.251+16G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.304+16G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.941+16G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1115+16G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4212G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*591+16G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1118+16G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.941+16G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1118+16G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.531+16G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7854
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

17-76676260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676260
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676260
    reference: chr 17
allele count: 5
allele frequency: 4.144356215705452e-5
allele num: 120646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.531+12C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1118+12C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.304+12C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1118+12C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1115+12C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.251+12C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4216C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.941+12C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.941+12C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*591+12C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

17-76676260-GCAGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676260
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676256
    reference: chr 17
allele count: 1
allele frequency: 8.288712431410904e-6
allele num: 120646
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1118+8_1118+11delACTG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.531+8_531+11delACTG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*591+8_*591+11delACTG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1118+8_1118+11delACTG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1115+8_1115+11delACTG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.251+8_251+11delACTG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.941+8_941+11delACTG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4220_171-4217delACTG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.941+8_941+11delACTG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.304+8_304+11delACTG
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1118+8_1118+11delACTG
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: GCAGT
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-76676263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676263
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676263
    reference: chr 17
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.251+9C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*591+9C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.941+9C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1118+9C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.941+9C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.531+9C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4219C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.304+9C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1115+9C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1118+9C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-76676294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676294
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676294
    reference: chr 17
allele count: 3
allele frequency: 2.475124993812188e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1096G>A
  hgvsp: ENSP00000354398.4:p.Glu366Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.282G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1093G>A
  hgvsp: ENSP00000465665.1:p.Glu365Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.919G>A
  hgvsp: ENSP00000465940.1:p.Glu307Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.919G>A
  hgvsp: ENSP00000466512.1:p.Glu307Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1096G>A
  hgvsp: ENSP00000389095.3:p.Glu366Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.509G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*569G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4250G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.229G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7853
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu366Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

17-76676297-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676297
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676297
    reference: chr 17
allele count: 5
allele frequency: 4.124663839897049e-5
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1093A>G
  hgvsp: ENSP00000354398.4:p.Lys365Glu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1093A>G
  hgvsp: ENSP00000389095.3:p.Lys365Glu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.916A>G
  hgvsp: ENSP00000465940.1:p.Lys306Glu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*566A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.279A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.506A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1090A>G
  hgvsp: ENSP00000465665.1:p.Lys364Glu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.916A>G
  hgvsp: ENSP00000466512.1:p.Lys306Glu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.226A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4253A>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7951
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys365Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum

17-76676303-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676303
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676303
    reference: chr 17
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*560G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1087G>A
  hgvsp: ENSP00000389095.3:p.Glu363Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4259G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.910G>A
  hgvsp: ENSP00000465940.1:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1087G>A
  hgvsp: ENSP00000354398.4:p.Glu363Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.910G>A
  hgvsp: ENSP00000466512.1:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-3G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1084G>A
  hgvsp: ENSP00000465665.1:p.Glu362Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.220G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.273G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu363Lys
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

17-76676304-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676304
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676304
    reference: chr 17
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.909C>T
  hgvsp: ENST00000589297.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1086C>T
  hgvsp: ENST00000446868.3:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1083C>T
  hgvsp: ENST00000591455.1:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1086C>T
  hgvsp: ENST00000361101.4:c.1086C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-4C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.909C>T
  hgvsp: ENST00000585509.1:c.909C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4260C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.272C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.219C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*559C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: n.503-4C>T
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

17-76676307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676307
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676307
    reference: chr 17
allele count: 4
allele frequency: 3.298316209575012e-5
allele num: 121274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1083G>A
  hgvsp: ENST00000446868.3:c.1083G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1083G>A
  hgvsp: ENST00000361101.4:c.1083G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.269G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.216G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.906G>A
  hgvsp: ENST00000589297.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*556G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-7G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.906G>A
  hgvsp: ENST00000585509.1:c.906G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1080G>A
  hgvsp: ENST00000591455.1:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4263G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19904
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
hgvs: n.503-7G>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-76676308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676308
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676308
    reference: chr 17
allele count: 4
allele frequency: 3.298044259753966e-5
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.905C>T
  hgvsp: ENSP00000466512.1:p.Thr302Met
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-8C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1082C>T
  hgvsp: ENSP00000354398.4:p.Thr361Met
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4264C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*555C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.215C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1079C>T
  hgvsp: ENSP00000465665.1:p.Thr360Met
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.905C>T
  hgvsp: ENSP00000465940.1:p.Thr302Met
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.268C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1082C>T
  hgvsp: ENSP00000389095.3:p.Thr361Met
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr361Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/17-76676310-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676310
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676310
    reference: chr 17
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1080G>T
  hgvsp: ENST00000361101.4:c.1080G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1080G>T
  hgvsp: ENST00000446868.3:c.1080G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.903G>T
  hgvsp: ENST00000589297.1:c.903G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.213G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4266G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.903G>T
  hgvsp: ENST00000585509.1:c.903G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-10G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.266G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1077G>T
  hgvsp: ENST00000591455.1:c.1077G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*553G>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro360Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

17-76676310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676310
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676310
    reference: chr 17
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.903G>A
  hgvsp: ENST00000589297.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1080G>A
  hgvsp: ENST00000361101.4:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-10G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.266G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*553G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1080G>A
  hgvsp: ENST00000446868.3:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4266G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.213G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.903G>A
  hgvsp: ENST00000585509.1:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1077G>A
  hgvsp: ENST00000591455.1:c.1077G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro360Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-76676311-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676311
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676311
    reference: chr 17
allele count: 2
allele frequency: 1.648858989579211e-5
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*552C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4267C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1076C>T
  hgvsp: ENSP00000465665.1:p.Pro359Leu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.902C>T
  hgvsp: ENSP00000465940.1:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-11C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1079C>T
  hgvsp: ENSP00000389095.3:p.Pro360Leu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1079C>T
  hgvsp: ENSP00000354398.4:p.Pro360Leu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.265C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.902C>T
  hgvsp: ENSP00000466512.1:p.Pro301Leu
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.212C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro360Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

17-76676312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676312
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676312
    reference: chr 17
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1078C>T
  hgvsp: ENSP00000389095.3:p.Pro360Ser
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*551C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1075C>T
  hgvsp: ENSP00000465665.1:p.Pro359Ser
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.264C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.901C>T
  hgvsp: ENSP00000466512.1:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-12C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.901C>T
  hgvsp: ENSP00000465940.1:p.Pro301Ser
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.211C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1078C>T
  hgvsp: ENSP00000354398.4:p.Pro360Ser
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4268C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro360Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

17-76676313-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676313
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676313
    reference: chr 17
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.210T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*550T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.900T>C
  hgvsp: ENST00000585509.1:c.900T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1077T>C
  hgvsp: ENST00000446868.3:c.1077T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.900T>C
  hgvsp: ENST00000589297.1:c.900T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4269T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1074T>C
  hgvsp: ENST00000591455.1:c.1074T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1077T>C
  hgvsp: ENST00000361101.4:c.1077T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-13T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.263T>C
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42823
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala359Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-76676316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676316
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676316
    reference: chr 17
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4272A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1074A>G
  hgvsp: ENST00000446868.3:c.1074A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.260A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.897A>G
  hgvsp: ENST00000589297.1:c.897A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*547A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.897A>G
  hgvsp: ENST00000585509.1:c.897A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1074A>G
  hgvsp: ENST00000361101.4:c.1074A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1071A>G
  hgvsp: ENST00000591455.1:c.1071A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-16A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.207A>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser358Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/17-76676327-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676327
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676327
    reference: chr 17
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1060T>G
  hgvsp: ENSP00000465665.1:p.Tyr354Asp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.196T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1063T>G
  hgvsp: ENSP00000389095.3:p.Tyr355Asp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.886T>G
  hgvsp: ENSP00000466512.1:p.Tyr296Asp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4283T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.886T>G
  hgvsp: ENSP00000465940.1:p.Tyr296Asp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1063T>G
  hgvsp: ENSP00000354398.4:p.Tyr355Asp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.249T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-27T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*536T>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr355Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

17-76676330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676330
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676330
    reference: chr 17
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.246G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-30G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.883G>A
  hgvsp: ENSP00000465940.1:p.Val295Ile
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.883G>A
  hgvsp: ENSP00000466512.1:p.Val295Ile
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1060G>A
  hgvsp: ENSP00000389095.3:p.Val354Ile
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1060G>A
  hgvsp: ENSP00000354398.4:p.Val354Ile
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1057G>A
  hgvsp: ENSP00000465665.1:p.Val353Ile
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4286G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.193G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*533G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42909
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val354Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

17-76676332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676332
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676332
    reference: chr 17
allele count: 3
allele frequency: 2.47255464345762e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*531C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1058C>T
  hgvsp: ENSP00000354398.4:p.Thr353Ile
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.881C>T
  hgvsp: ENSP00000465940.1:p.Thr294Ile
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1058C>T
  hgvsp: ENSP00000389095.3:p.Thr353Ile
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.244C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.881C>T
  hgvsp: ENSP00000466512.1:p.Thr294Ile
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-32C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4288C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.191C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1055C>T
  hgvsp: ENSP00000465665.1:p.Thr352Ile
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr353Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

17-76676349-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676349
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676349
    reference: chr 17
allele count: 3
allele frequency: 2.472676920033628e-5
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.864G>A
  hgvsp: ENST00000589297.1:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.174G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1041G>A
  hgvsp: ENST00000361101.4:c.1041G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1041G>A
  hgvsp: ENST00000446868.3:c.1041G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.227G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*514G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-49G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1038G>A
  hgvsp: ENST00000591455.1:c.1038G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4305G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.864G>A
  hgvsp: ENST00000585509.1:c.864G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val347Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

17-76676353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676353
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676353
    reference: chr 17
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.223G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.860G>A
  hgvsp: ENSP00000465940.1:p.Arg287Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.170G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.860G>A
  hgvsp: ENSP00000466512.1:p.Arg287Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4309G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1034G>A
  hgvsp: ENSP00000465665.1:p.Arg345Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1037G>A
  hgvsp: ENSP00000389095.3:p.Arg346Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*510G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1037G>A
  hgvsp: ENSP00000354398.4:p.Arg346Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-53G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg346Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

17-76676355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676355
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676355
    reference: chr 17
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.858G>A
  hgvsp: ENST00000585509.1:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4311G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1035G>A
  hgvsp: ENST00000446868.3:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.221G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.168G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*508G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1035G>A
  hgvsp: ENST00000361101.4:c.1035G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.858G>A
  hgvsp: ENST00000589297.1:c.858G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1032G>A
  hgvsp: ENST00000591455.1:c.1032G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-55G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly345Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP

17-76676358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676358
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676358
    reference: chr 17
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-58C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1032C>T
  hgvsp: ENST00000361101.4:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*505C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1029C>T
  hgvsp: ENST00000591455.1:c.1029C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.855C>T
  hgvsp: ENST00000585509.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.165C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.218C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.855C>T
  hgvsp: ENST00000589297.1:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4314C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1032C>T
  hgvsp: ENST00000446868.3:c.1032C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp344Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

17-76676366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676366
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676366
    reference: chr 17
allele count: 4
allele frequency: 3.297500494625074e-5
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.1021G>A
  hgvsp: ENSP00000465665.1:p.Glu341Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.1024G>A
  hgvsp: ENSP00000389095.3:p.Glu342Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.847G>A
  hgvsp: ENSP00000465940.1:p.Glu283Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4322G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.210G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-66G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.1024G>A
  hgvsp: ENSP00000354398.4:p.Glu342Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.157G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.847G>A
  hgvsp: ENSP00000466512.1:p.Glu283Lys
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*497G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu342Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

17-76676393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676393
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676393
    reference: chr 17
allele count: 4
allele frequency: 3.309285856112251e-5
allele num: 120872
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.997G>A
  hgvsp: ENSP00000354398.4:p.Asp333Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.183G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-93G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.820G>A
  hgvsp: ENSP00000465940.1:p.Asp274Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.994G>A
  hgvsp: ENSP00000465665.1:p.Asp332Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*470G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.130G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4349G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.997G>A
  hgvsp: ENSP00000389095.3:p.Asp333Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.820G>A
  hgvsp: ENSP00000466512.1:p.Asp274Asn
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27667
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp333Asn
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

17-76676402-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676402
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676402
    reference: chr 17
allele count: 2
allele frequency: 1.660495159656609e-5
allele num: 120446
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.121G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.985G>A
  hgvsp: ENSP00000465665.1:p.Asp329Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.811G>A
  hgvsp: ENSP00000466512.1:p.Asp271Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.988G>A
  hgvsp: ENSP00000389095.3:p.Asp330Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.988G>A
  hgvsp: ENSP00000354398.4:p.Asp330Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*461G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.174G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.811G>A
  hgvsp: ENSP00000465940.1:p.Asp271Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-102G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4358G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp330Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

17-76676403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676403
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676403
    reference: chr 17
allele count: 1
allele frequency: 8.307579835842223e-6
allele num: 120372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.810C>T
  hgvsp: ENST00000589297.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.810C>T
  hgvsp: ENST00000585509.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.173C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.987C>T
  hgvsp: ENST00000361101.4:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.987C>T
  hgvsp: ENST00000446868.3:c.987C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*460C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4359C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.984C>T
  hgvsp: ENST00000591455.1:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-103C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.120C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro329Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

17-76676408-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676408
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676408
    reference: chr 17
allele count: 1
allele frequency: 8.335973058135075e-6
allele num: 119962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-108A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.805A>G
  hgvsp: ENSP00000466512.1:p.Ile269Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.115A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.982A>G
  hgvsp: ENSP00000389095.3:p.Ile328Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.805A>G
  hgvsp: ENSP00000465940.1:p.Ile269Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.168A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.979A>G
  hgvsp: ENSP00000465665.1:p.Ile327Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.982A>G
  hgvsp: ENSP00000354398.4:p.Ile328Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*455A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4364A>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile328Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

17-76676414-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676414
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676414
    reference: chr 17
allele count: 1
allele frequency: 8.394614015647561e-6
allele num: 119124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*449C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.799C>G
  hgvsp: ENSP00000465940.1:p.Leu267Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.109C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.162C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.799C>G
  hgvsp: ENSP00000466512.1:p.Leu267Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.976C>G
  hgvsp: ENSP00000354398.4:p.Leu326Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.973C>G
  hgvsp: ENSP00000465665.1:p.Leu325Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.976C>G
  hgvsp: ENSP00000389095.3:p.Leu326Val
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4370C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-114C>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39967
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu326Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ

17-76676434-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676434
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676434
    reference: chr 17
allele count: 1
allele frequency: 8.562963470397836e-6
allele num: 116782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-8A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-8A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-8A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-8A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-8A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-8A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-8A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4390A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-134A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-8A>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
hgvs: c.964-8A>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

17-76676436-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676436
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676436
    reference: chr 17
allele count: 50
allele frequency: 4.293540797224655e-4
allele num: 116454
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-10T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-10T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-136T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-10T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-10T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-10T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-10T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4392T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-10T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-10T>C
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6863
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23738
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14804
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ

17-76676443-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676443
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676443
    reference: chr 17
allele count: 1
allele frequency: 8.67362869930264e-6
allele num: 115292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-17T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-17T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-17T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-143T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-17T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-17T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-17T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4399T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-17T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-17T>C
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

17-76676444-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676444
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676443
    reference: chr 17
allele count: 1
allele frequency: 8.674832575731289e-6
allele num: 115276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-19delT
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-19delT
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-19delT
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4401delT
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-19delT
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-145delT
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-19delT
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-19delT
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-19delT
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-19delT
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21048
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: GA
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ

17-76676446-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676446
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676446
    reference: chr 17
allele count: 1
allele frequency: 8.702462796971543e-6
allele num: 114910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4402C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-20C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-20C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-20C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-20C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-146C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-20C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-20C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-20C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-20C>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12145
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8072
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-76676454-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676454
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676454
    reference: chr 17
allele count: 1
allele frequency: 8.774238834781082e-6
allele num: 113970
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-28C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4410C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-28C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-28C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-154C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-28C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-28C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-28C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-28C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-28C>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6926
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22918
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

17-76676458-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676458
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676458
    reference: chr 17
allele count: 1
allele frequency: 8.82861885086697e-6
allele num: 113268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-158T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4414T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-32T>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-76676463-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676463
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676463
    reference: chr 17
allele count: 1
allele frequency: 8.888572850743085e-6
allele num: 112504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-37T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-163T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-37T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-37T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4419T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-37T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-37T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-37T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-37T>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-37T>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

17-76676464-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676464
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676464
    reference: chr 17
allele count: 1
allele frequency: 8.912814845184407e-6
allele num: 112198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-38C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-38C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-38C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-38C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-38C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-38C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-164C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4420C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-38C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-38C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11477
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

17-76676469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676469
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676469
    reference: chr 17
allele count: 20
allele frequency: 1.813697040046431e-4
allele num: 110272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-169G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4425G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8543
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14151
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16375
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

17-76676474-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676474
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676474
    reference: chr 17
allele count: 3
allele frequency: 2.75471975317711e-5
allele num: 108904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-48T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-48T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-48T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4430T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-48T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-174T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-48T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-48T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-48T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-48T>C
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16118
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

17-76676478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76676478
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76676478
    reference: chr 17
allele count: 3
allele frequency: 2.793660253664351e-5
allele num: 107386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.787-52C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-178C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.787-52C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4434C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.961-52C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*437-52C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.97-52C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.150-52C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.964-52C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.964-52C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11559
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16020
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2648
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

17-76677004-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677004
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677004
    reference: chr 17
allele count: 5
allele frequency: 4.161395565616885e-5
allele num: 120152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.960+49T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.786+49T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.963+49T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.149+49T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.786+49T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4960T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.963+49T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-704T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*436+49T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.96+49T>C
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

17-76677013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677013
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677013
    reference: chr 17
allele count: 161
allele frequency: 1.339233725398859e-3
allele num: 120218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.960+40G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4969G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.96+40G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.786+40G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.149+40G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.786+40G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-713G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.963+40G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*436+40G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.963+40G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 9.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 2
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

17-76677019-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677019
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677019
    reference: chr 17
allele count: 1
allele frequency: 8.314901967305805e-6
allele num: 120266
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.963+34A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.786+34A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4975A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.963+34A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.96+34A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.149+34A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.786+34A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-719A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.960+34A>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*436+34A>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

17-76677020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677020
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677020
    reference: chr 17
allele count: 21
allele frequency: 1.746129413134219e-4
allele num: 120266
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.963+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-4976G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.960+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.96+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.149+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.786+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.963+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.786+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-720G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*436+33G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-76677045-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677045
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677045
    reference: chr 17
allele count: 1
allele frequency: 8.296001327360212e-6
allele num: 120540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-745T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*436+8T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.149+8T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.963+8T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.786+8T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5001T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.786+8T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.960+8T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.96+8T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.963+8T>C
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45831
  bin: 9.75e1
  variant carriers: 1
hgvs: c.963+8T>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

17-76677072-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677072
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677072
    reference: chr 17
allele count: 3
allele frequency: 2.483361478096752e-5
allele num: 120804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.941T>C
  hgvsp: ENSP00000465665.1:p.Val314Ala
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.767T>C
  hgvsp: ENSP00000466512.1:p.Val256Ala
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.767T>C
  hgvsp: ENSP00000465940.1:p.Val256Ala
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-772T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*417T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.130T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.944T>C
  hgvsp: ENSP00000354398.4:p.Val315Ala
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.944T>C
  hgvsp: ENSP00000389095.3:p.Val315Ala
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.77T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5028T>C
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val315Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff

17-76677078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677078
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677078
    reference: chr 17
allele count: 3
allele frequency: 2.482909307599358e-5
allele num: 120826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.761G>A
  hgvsp: ENSP00000466512.1:p.Arg254Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.938G>A
  hgvsp: ENSP00000389095.3:p.Arg313Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.935G>A
  hgvsp: ENSP00000465665.1:p.Arg312Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-778G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.761G>A
  hgvsp: ENSP00000465940.1:p.Arg254Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5034G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.938G>A
  hgvsp: ENSP00000354398.4:p.Arg313Gln
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.71G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*411G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.124G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6681
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg313Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

17-76677079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677079
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677079
    reference: chr 17
allele count: 1
allele frequency: 8.275816409288777e-6
allele num: 120834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.70C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.760C>T
  hgvsp: ENSP00000465940.1:p.Arg254Trp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.934C>T
  hgvsp: ENSP00000465665.1:p.Arg312Trp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.937C>T
  hgvsp: ENSP00000354398.4:p.Arg313Trp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.760C>T
  hgvsp: ENSP00000466512.1:p.Arg254Trp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.937C>T
  hgvsp: ENSP00000389095.3:p.Arg313Trp
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.123C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*410C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-779C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5035C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg313Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

17-76677084-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677084
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677084
    reference: chr 17
allele count: 3
allele frequency: 2.482498386376049e-5
allele num: 120846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*405G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.755G>A
  hgvsp: ENSP00000465940.1:p.Ser252Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.932G>A
  hgvsp: ENSP00000354398.4:p.Ser311Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.929G>A
  hgvsp: ENSP00000465665.1:p.Ser310Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-784G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.65G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.118G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.755G>A
  hgvsp: ENSP00000466512.1:p.Ser252Asn
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5040G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.932G>A
  hgvsp: ENSP00000389095.3:p.Ser311Asn
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser311Asn
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

17-76677111-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677111
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677111
    reference: chr 17
allele count: 2
allele frequency: 1.656451880072884e-5
allele num: 120740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-811G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5067G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.902G>A
  hgvsp: ENSP00000465665.1:p.Arg301His
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.728G>A
  hgvsp: ENSP00000466512.1:p.Arg243His
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.905G>A
  hgvsp: ENSP00000389095.3:p.Arg302His
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.728G>A
  hgvsp: ENSP00000465940.1:p.Arg243His
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.905G>A
  hgvsp: ENSP00000354398.4:p.Arg302His
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*378G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.91G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.38G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg302His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-76677133-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677133
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677133
    reference: chr 17
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.78-9G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.715-9G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*365-9G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5089G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.16G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-833G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.715-9G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.889-9G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.892-9G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.892-9G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/17-76677139-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677139
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677140
    reference: chr 17
allele count: 1
allele frequency: 8.291461452995706e-6
allele num: 120606
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.78-16_78-15insG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.889-16_889-15insG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*365-16_*365-15insG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.715-16_715-15insG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.892-16_892-15insG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.9_10insG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-840_503-839insG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.715-16_715-15insG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.892-16_892-15insG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5096_171-5095insG
  variant of: http://identifiers.org/hgnc/9501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

17-76677141-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677141
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677141
    reference: chr 17
allele count: 1
allele frequency: 8.29228651508367e-6
allele num: 120594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*365-17C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.715-17C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.78-17C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.892-17C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.715-17C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.889-17C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.8C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.892-17C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-841C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5097C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45824
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

17-76677143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677143
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677143
    reference: chr 17
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.889-19C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-843C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5099C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.715-19C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*365-19C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.892-19C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.892-19C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586430
  gene symbol: CYTH1
  hgvsc: ENST00000586430.1:n.6C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.715-19C>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.78-19C>T
  variant of: http://identifiers.org/hgnc/9501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

17-76677154-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677154
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677154
    reference: chr 17
allele count: 1
allele frequency: 8.297791128001726e-6
allele num: 120514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.889-30T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-854T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.78-30T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.892-30T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.715-30T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*365-30T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5110T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.892-30T>C
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.715-30T>C
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1062
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

17-76677155-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677155
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677155
    reference: chr 17
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*365-31C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.715-31C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.715-31C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.892-31C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-855C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5111C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.892-31C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.78-31C>G
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.889-31C>G
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

17-76677156-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677156
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677156
    reference: chr 17
allele count: 1
allele frequency: 8.298617450332775e-6
allele num: 120502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*365-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.715-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.892-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.892-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.889-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.715-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.78-32T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-856T>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5112T>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6650
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/17-76677173-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677173
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677173
    reference: chr 17
allele count: 4
allele frequency: 3.322038402763936e-5
allele num: 120408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.715-49G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-873G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5129G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*365-49G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.892-49G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.889-49G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.78-49G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.715-49G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.892-49G>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6649
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3421
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

17-76677176-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76677176
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76677174
    reference: chr 17
allele count: 3
allele frequency: 2.491777135453005e-5
allele num: 120396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.889-54_889-53delAG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-878_503-877delAG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.715-54_715-53delAG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*365-54_*365-53delAG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.892-54_892-53delAG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.715-54_715-53delAG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.171-5134_171-5133delAG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.78-54_78-53delAG
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.892-54_892-53delAG
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: ACT
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/17-76688449-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76688449
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76688449
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.77+50G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.891+50G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.714+50G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.170+15830G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.891+50G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*364+7964G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.888+50G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-12149G>T
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.714+50G>T
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41885
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

17-76688450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76688450
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76688450
    reference: chr 17
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.891+49G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.77+49G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.888+49G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.891+49G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.170+15829G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.714+49G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-12150G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*364+7963G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.714+49G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6806
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

17-76688456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76688456
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76688456
    reference: chr 17
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.77+43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.714+43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.714+43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-12156G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.891+43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.170+15823G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.891+43G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*364+7957G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.888+43G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

17-76688466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 76688466
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 76688466
    reference: chr 17
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000466512
  ensembl transcript: ENST00000589297
  gene symbol: CYTH1
  hgvsc: ENST00000589297.1:c.714+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465945
  ensembl transcript: ENST00000591574
  gene symbol: CYTH1
  hgvsc: ENST00000591574.1:c.*364+7947G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465252
  ensembl transcript: ENST00000589296
  gene symbol: CYTH1
  hgvsc: ENST00000589296.1:c.170+15813G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000389095
  ensembl transcript: ENST00000446868
  gene symbol: CYTH1
  hgvsc: ENST00000446868.3:c.891+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000586175
  gene symbol: CYTH1
  hgvsc: ENST00000586175.1:n.77+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000354398
  ensembl transcript: ENST00000361101
  gene symbol: CYTH1
  hgvsc: ENST00000361101.4:c.891+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl transcript: ENST00000590775
  gene symbol: CYTH1
  hgvsc: ENST00000590775.1:n.503-12166G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465940
  ensembl transcript: ENST00000585509
  gene symbol: CYTH1
  hgvsc: ENST00000585509.1:c.714+33G>A
  variant of: http://identifiers.org/hgnc/9501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000108669
  ensembl protein: ENSP00000465665
  ensembl transcript: ENST00000591455
  gene symbol: CYTH1
  hgvsc: ENST00000591455.1:c.888+33G>A
  variant of: http://identifiers.org/hgnc/9501
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41880
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 7708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3333
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.662382e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

FS
type: SiteQuality
SIO_000300: 2.9702e1

QD
type: SiteQuality
SIO_000300: 1.252e1

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.927e0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7742
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 417
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.049773755656108e-5
allele num: 66300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.162e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.26e-1

DP
type: SiteQuality
SIO_000300: 1.669313e6

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2110
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.554e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.008e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.678336e6

GenotypeQuality
all individuals: 2119
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 471
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

DP
type: SiteQuality
SIO_000300: 1.684135e6

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.724e-1

QD
type: SiteQuality
SIO_000300: 1.599e1

FS
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41526
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.68454e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.87e-1

FS
type: SiteQuality
SIO_000300: 1.081e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.544e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.786e1

QD
type: SiteQuality
SIO_000300: 1.367e1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41624
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.256256256256256e-5
allele num: 15984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.582e1

FS
type: SiteQuality
SIO_000300: 5.149e0

DP
type: SiteQuality
SIO_000300: 1.685529e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.43e-1

GenotypeQuality
all individuals: 7864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 418
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.519701618239789e-5
allele num: 66492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.612e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.688384e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.55e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.238e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3331
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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SIO_000300: 1.37e-1

FS
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ClippingRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQ
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

FS
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DP
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ClippingRankSum
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MQ
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QD
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.500720115218435e-5
allele num: 66656
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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InbreedingCoeff
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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SIO_000300: 7.02e-1

ReadPosRankSum
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SIO_000300: 1.33e0

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele num: 908
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African
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allele count: 4
allele frequency: 3.846893633391037e-4
allele num: 10398
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.906e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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QD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.500105007350515e-5
allele num: 66662
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Other
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South Asian
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Other
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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MQ
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 2
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allele num: 66676
num of homozygotes: 0

Latino
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Other
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European (Finnish)
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African
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South Asian
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East Asian
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.70271e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.435e1

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 4.217e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 1.7029e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.445e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 4.217e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 1.7029e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 1.445e1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999400119976005e-5
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

QD
type: SiteQuality
SIO_000300: 1.653e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.703206e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 466
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.774e-1

DP
type: SiteQuality
SIO_000300: 1.702891e6

MQ
type: SiteQuality
SIO_000300: 5.908e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.36e0

QD
type: SiteQuality
SIO_000300: 1.052e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

DP
type: SiteQuality
SIO_000300: 1.702986e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.304e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.508e0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.199e1

DP
type: SiteQuality
SIO_000300: 1.703204e6

MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.264e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.289e0

MQRankSum
type: SiteQuality
SIO_000300: -1.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.07e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.703839e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3314
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49829064955317e-5
allele num: 66692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.703998e6

FS
type: SiteQuality
SIO_000300: 2.824e0

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.178e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.486e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

QD
type: SiteQuality
SIO_000300: 1.13e1

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818402230573403e-4
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 7.655e0

VQSLOD
type: SiteQuality
SIO_000300: -6.279e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.112e0

DP
type: SiteQuality
SIO_000300: 1.704208e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.84e0

VQSLOD
type: SiteQuality
SIO_000300: -3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

MQRankSum
type: SiteQuality
SIO_000300: 8.97e-1

FS
type: SiteQuality
SIO_000300: 3.319e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

DP
type: SiteQuality
SIO_000300: 1.704483e6

GenotypeQuality
all individuals: 42970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7960
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.34e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 2.974e0

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.544e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.035e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 7.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.05e-1

DP
type: SiteQuality
SIO_000300: 1.704249e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

DP
type: SiteQuality
SIO_000300: 1.704398e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.128e0

QD
type: SiteQuality
SIO_000300: 1.083e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213297743266198e-4
allele num: 16484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.986e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

DP
type: SiteQuality
SIO_000300: 1.704195e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 498
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.464403256539061e-4
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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SIO_000300: 1.696461e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506205566935775e-5
allele num: 66392
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.247657128576784e-5
allele num: 16006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.291e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
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SIO_000300: 7.19e-1

QD
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MQRankSum
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SIO_000300: -1.7e-2

InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.2e-1

DP
type: SiteQuality
SIO_000300: 1.689211e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
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African
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allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
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MQ
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DP
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InbreedingCoeff
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SIO_000300: 2.0e-4

MQRankSum
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BaseQRankSum
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SIO_000300: 1.25e-1

FS
type: SiteQuality
SIO_000300: 7.783e0

VQSLOD
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SIO_000300: 9.5e-2

ClippingRankSum
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SIO_000300: 2.41e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
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SIO_000300: 3.7e-2

FS
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SIO_000300: 0.0e0

VQSLOD
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ClippingRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
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SIO_000300: 1.11e0

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.99e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15278
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.333e0

DP
type: SiteQuality
SIO_000300: 1.661259e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.08e-1

QD
type: SiteQuality
SIO_000300: 1.562e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.03e-2

FS
type: SiteQuality
SIO_000300: 2.829e0

MQRankSum
type: SiteQuality
SIO_000300: -4.04e-1

MQ
type: SiteQuality
SIO_000300: 5.913e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537704514700455e-5
allele num: 65032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14330
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.643e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.778e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.78e-1

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.826e1

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 1.581171e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.125334083556056e-3
allele num: 14218
num of homozygotes: 0

European (Non-Finnish)
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allele count: 30
allele frequency: 4.622211265869592e-4
allele num: 64904
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8496
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Latino
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allele count: 4
allele frequency: 3.551136363636364e-4
allele num: 11264
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6518
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.568575e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64382
num of homozygotes: 0

East Asian
type: Population
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Other
type: Population
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allele frequency: 1.160092807424594e-3
allele num: 862
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
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QD
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FS
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3270
bin: 9.75e1
variant carriers: 1

African
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allele count: 1
allele frequency: 9.891196834817012e-5
allele num: 10110
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64196
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.519e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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SIO_000300: -1.131e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.997e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 1
allele frequency: 1.198465963566635e-4
allele num: 8344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63786
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: -1.076e0

ClippingRankSum
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SIO_000300: 9.62e-1

BaseQRankSum
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SIO_000300: 2.32e0

QD
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MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.581e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573663173134422e-5
allele num: 63546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.581e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.346812e6

MQRankSum
type: SiteQuality
SIO_000300: -3.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.463e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580677794638341e-5
allele num: 63264
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.31192e6

FS
type: SiteQuality
SIO_000300: 5.673e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -6.899999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.421e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.939e0

QD
type: SiteQuality
SIO_000300: 8.050000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584836286411614e-5
allele num: 63098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 3.332e0

DP
type: SiteQuality
SIO_000300: 1.300917e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

QD
type: SiteQuality
SIO_000300: 1.173e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.119e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.396388009681623e-3
allele num: 10742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.423638991488678e-5
allele num: 62270
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.00928542591845e-4
allele num: 9908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.103e0

DP
type: SiteQuality
SIO_000300: 1.257527e6

QD
type: SiteQuality
SIO_000300: 1.224e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.975e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.24454105966711e-5
allele num: 61642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.015434606011373e-4
allele num: 9848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.047921359819783e-4
allele num: 9766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.644304130491976e-5
allele num: 60816
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.57e-1

FS
type: SiteQuality
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022152376922845e-5
allele num: 66178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.613695765812859e-4
allele num: 11478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 3.306339e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
SIO_000300: 1.356e1

VQSLOD
type: SiteQuality
SIO_000300: 9.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

FS
type: SiteQuality
SIO_000300: 6.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 15
allele frequency: 1.30684788290643e-3
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510072181450273e-5
allele num: 66222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 144
allele frequency: 1.42433234421365e-2
allele num: 10110
num of homozygotes: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 1.419e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.642e0

DP
type: SiteQuality
SIO_000300: 3.312464e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.36e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

GenotypeQuality
all individuals: 45833
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.088650754992694e-5
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

DP
type: SiteQuality
SIO_000300: 3.297028e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.159e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 1.444e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.99e0

GenotypeQuality
all individuals: 2251
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 21

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1394
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variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.113335144763457e-4
allele num: 66246
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.225570458108344e-4
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.298045e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.913e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
SIO_000300: 2.13e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

QD
type: SiteQuality
SIO_000300: 1.233e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2258
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variant carriers: 0

GenotypeQuality
all individuals: 425
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 1696
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 1400
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3026
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GenotypeQuality
all individuals: 1076
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.008e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.356e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.68e0

FS
type: SiteQuality
SIO_000300: 6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.137e-1

DP
type: SiteQuality
SIO_000300: 3.299812e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 45830
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.513314277117496e-5
allele num: 66470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

QD
type: SiteQuality
SIO_000300: 1.27e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 2.452e0

DP
type: SiteQuality
SIO_000300: 3.302667e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3220
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.742790335151988e-5
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008876184744998e-5
allele num: 66470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.897e1

DP
type: SiteQuality
SIO_000300: 3.302702e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: 8.149999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

QD
type: SiteQuality
SIO_000300: 1.07e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45827
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variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504302304591131e-5
allele num: 66476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.302516e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-1

FS
type: SiteQuality
SIO_000300: 9.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
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GenotypeQuality
all individuals: 1875
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.512771142332802e-5
allele num: 66478
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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QD
type: SiteQuality
SIO_000300: 1.106e1

InbreedingCoeff
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SIO_000300: 0.0e0

DP
type: SiteQuality
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ClippingRankSum
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SIO_000300: -9.97e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.010869237948996e-5
allele num: 66426
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

ClippingRankSum
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DP
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InbreedingCoeff
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QD
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VQSLOD
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MQ
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SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 7.91e0

BaseQRankSum
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SIO_000300: 3.05e0

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506341698550899e-5
allele num: 66386
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8620
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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BaseQRankSum
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QD
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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ClippingRankSum
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SIO_000300: -4.47e-1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 6.263e0

QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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MQ
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SIO_000300: 6.057e1

BaseQRankSum
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SIO_000300: -1.064e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

DP
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SIO_000300: 3.296785e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.082725060827251e-5
allele num: 16440
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Other
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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DP
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FS
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QD
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66356
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QD
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MQRankSum
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DP
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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European (Finnish)
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East Asian
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allele num: 8614
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Latino
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South Asian
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Other
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African
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FS
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BaseQRankSum
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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allele num: 66326
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East Asian
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Other
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VQSLOD
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ClippingRankSum
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MQ
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DP
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.507977199384745e-5
allele num: 66314
num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 2.23e0

MQ
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VQSLOD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.526252263126132e-5
allele num: 66280
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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MQ
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DP
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MQRankSum
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QD
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BaseQRankSum
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SIO_000300: -3.733e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
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allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.018047926601074e-5
allele num: 66268
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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DP
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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African
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66738
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East Asian
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South Asian
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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QD
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DP
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InbreedingCoeff
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FS
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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