15-81578195-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81578195
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81578195
    reference: chr 15
allele count: 2
allele frequency: 1.659310390601666e-5
allele num: 120532
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1332+24T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1332+24T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1332+24T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.1332+24T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.481+24T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1332+24T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1332+24T>G
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

15-81578206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81578206
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81578206
    reference: chr 15
allele count: 2
allele frequency: 1.661212352775055e-5
allele num: 120394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1332+35C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1332+35C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1332+35C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.1332+35C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1332+35C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.481+35C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1332+35C>T
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 506
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genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
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genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

15-81578212-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81578212
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81578212
    reference: chr 15
allele count: 13
allele frequency: 1.080254607701384e-4
allele num: 120342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1332+41C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.481+41C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1332+41C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1332+41C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.1332+41C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1332+41C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1332+41C>T
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10330
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

15-81578213-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81578213
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81578213
    reference: chr 15
allele count: 17
allele frequency: 1.412546738678853e-4
allele num: 120350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.481+42G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1332+42G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1332+42G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1332+42G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1332+42G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1332+42G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.1332+42G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10334
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30633
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

15-81582200-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582200
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582200
    reference: chr 15
allele count: 1
allele frequency: 9.382623381497467e-5
allele num: 10658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-594T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-594T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-594T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-594T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.1333-45T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-594T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-594T>G
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

15-81582201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582201
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582201
    reference: chr 15
allele count: 1
allele frequency: 9.380863039399625e-5
allele num: 10660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-593G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-593G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.1333-44G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-593G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-593G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-593G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-593G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

15-81582260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582260
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582260
    reference: chr 15
allele count: 1
allele frequency: 9.25240562546262e-5
allele num: 10808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-534G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-534G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.1348G>A
  hgvsp: ENSP00000452738.1:p.Ala450Thr
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-534G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-534G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-534G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-534G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala450Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

15-81582298-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582298
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582298
    reference: chr 15
allele count: 3
allele frequency: 2.765996680803983e-4
allele num: 10846
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-496T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-496T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-496T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-496T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*21T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-496T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-496T>C
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

15-81582313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582313
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582313
    reference: chr 15
allele count: 1
allele frequency: 9.218289085545723e-5
allele num: 10848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-481C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-481C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-481C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-481C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-481C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-481C>T
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

15-81582314-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582314
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582314
    reference: chr 15
allele count: 0
allele frequency: 0.0e0
allele num: 10844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-480C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-480C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-480C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-480C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-480C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-480C>T
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

15-81582319-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582319
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582319
    reference: chr 15
allele count: 1
allele frequency: 9.240436148586214e-5
allele num: 10822
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-475C>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-475C>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-475C>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*42C>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-475C>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-475C>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-475C>G
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

15-81582747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582747
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582747
    reference: chr 15
allele count: 1
allele frequency: 9.35576221394757e-6
allele num: 106886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*110-47G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-47G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-47G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-47G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-47G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-47G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-47G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14206
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3650
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

15-81582751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582751
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582751
    reference: chr 15
allele count: 1
allele frequency: 9.324009324009324e-6
allele num: 107250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-43G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-43G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-43G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-43G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*110-43G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-43G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-43G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11476
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13979
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5764
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6074
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

15-81582752-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582752
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582752
    reference: chr 15
allele count: 1
allele frequency: 9.309946747104606e-6
allele num: 107412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-42A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-42A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-42A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-42A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*110-42A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-42A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-42A>G
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5937
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14675
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

15-81582760-CTGTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582760
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582756
    reference: chr 15
allele count: 1
allele frequency: 9.250522654529981e-6
allele num: 108102
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-27_1333-24delTTTG
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-27_1333-24delTTTG
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-27_482-24delTTTG
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-27_1333-24delTTTG
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-27_1333-24delTTTG
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*110-27_*110-24delTTTG
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-27_1333-24delTTTG
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4862
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4463
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: CTGTT
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-81582762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582762
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582762
    reference: chr 15
allele count: 1
allele frequency: 9.227986637875348e-6
allele num: 108366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*110-32G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-32G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-32G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-32G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-32G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-32G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-32G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4039
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4809
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

15-81582766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582766
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582766
    reference: chr 15
allele count: 1
allele frequency: 9.179196269574637e-6
allele num: 108942
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-28G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-28G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-28G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*110-28G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-28G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-28G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-28G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

15-81582776-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582776
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582776
    reference: chr 15
allele count: 1
allele frequency: 8.995232526760817e-6
allele num: 111170
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1333-18A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1333-18A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1333-18A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.482-18A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1333-18A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*110-18A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1333-18A>T
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4904
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/15-81582803-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582803
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582803
    reference: chr 15
allele count: 1
allele frequency: 8.506005239699228e-6
allele num: 117564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1342C>A
  hgvsp: ENSP00000378155.2:p.Gln448Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*119C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1342C>A
  hgvsp: ENSP00000453250.1:p.Gln448Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1342C>A
  hgvsp: ENSP00000302935.4:p.Gln448Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1342C>A
  hgvsp: ENSP00000456972.1:p.Gln448Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.491C>A
  hgvsp: ENSP00000454636.1:p.Gln165Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1342C>A
  hgvsp: ENSP00000458125.1:p.Gln448Lys
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35673
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln448Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

15-81582836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582836
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582836
    reference: chr 15
allele count: 1254
allele frequency: 1.048915952890792e-2
allele num: 119552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1375G>A
  hgvsp: ENSP00000378155.2:p.Glu459Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1375G>A
  hgvsp: ENSP00000453250.1:p.Glu459Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.524G>A
  hgvsp: ENSP00000454636.1:p.Glu176Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1375G>A
  hgvsp: ENSP00000302935.4:p.Glu459Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1375G>A
  hgvsp: ENSP00000456972.1:p.Glu459Lys
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*152G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1375G>A
  hgvsp: ENSP00000458125.1:p.Glu459Lys
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 5.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 12565
  bin: 2.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 3.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 6.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 35163
  bin: 2.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 3.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6201
  bin: 9.75e1
  variant carriers: 1157
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6347
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu459Lys
num of homozygotes: 58
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

15-81582847-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582847
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582846
    reference: chr 15
allele count: 1
allele frequency: 8.3558942478024e-6
allele num: 119676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1389delT
  hgvsp: ENSP00000378155.2:p.Phe463LeufsTer45
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*166delT
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.538delT
  hgvsp: ENSP00000454636.1:p.Phe180LeufsTer75
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1389delT
  hgvsp: ENSP00000458125.1:p.Phe463LeufsTer45
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1389delT
  hgvsp: ENSP00000456972.1:p.Phe463LeufsTer75
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1389delT
  hgvsp: ENSP00000453250.1:p.Phe463LeufsTer45
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1389delT
  hgvsp: ENSP00000302935.4:p.Phe463LeufsTer45
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5638
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe463LeufsTer45
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: GT
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-81582864-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582864
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582864
    reference: chr 15
allele count: 3
allele frequency: 2.507438734913577e-5
allele num: 119644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.552A>G
  hgvsp: ENSP00000454636.1:p.His185Arg
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1403A>G
  hgvsp: ENSP00000378155.2:p.His468Arg
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1403A>G
  hgvsp: ENSP00000458125.1:p.His468Arg
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1403A>G
  hgvsp: ENSP00000453250.1:p.His468Arg
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*180A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1403A>G
  hgvsp: ENSP00000302935.4:p.His468Arg
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1403A>G
  hgvsp: ENSP00000456972.1:p.His468Arg
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4814
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35985
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5668
  bin: 9.75e1
  variant carriers: 3
hgvs: p.His468Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

15-81582868-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582868
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582868
    reference: chr 15
allele count: 61202
allele frequency: 5.109534145934213e-1
allele num: 119780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.556G>A
  hgvsp: ENST00000560115.1:c.556G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1407G>A
  hgvsp: ENST00000559383.1:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1407G>A
  hgvsp: ENST00000559388.1:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*184G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1407G>A
  hgvsp: ENST00000394660.2:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1407G>A
  hgvsp: ENST00000302987.4:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1407G>A
  hgvsp: ENST00000360547.5:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 9.75e1
  variant carriers: 3724
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 4.25e1
  variant carriers: 5566
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 2.75e1
  variant carriers: 3508
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 5.75e1
  variant carriers: 2948
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.75e1
  variant carriers: 5542
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 6.25e1
  variant carriers: 2070
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.75e1
  variant carriers: 740
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 8.25e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 10967
  bin: 2.25e1
  variant carriers: 2391
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 1169
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 4.75e1
  variant carriers: 5124
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 3.25e1
  variant carriers: 4540
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 5.25e1
  variant carriers: 4138
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 6.75e1
  variant carriers: 1406
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 7.25e1
  variant carriers: 987
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 8.75e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 9.25e1
  variant carriers: 255
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.25e1
  variant carriers: 346
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.75e1
  variant carriers: 212
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 8.75e1
  variant carriers: 359
hgvs: p.Gln469Gln
num of homozygotes: 16048
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

15-81582883-T-TAAGACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582883
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582889
    reference: chr 15
allele count: 1
allele frequency: 8.67935009026524e-6
allele num: 115216
alternate allele: TAAGACA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.569+5_569+10dupGACAAA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1420+5_1420+10dupGACAAA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1420+5_1420+10dupGACAAA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*197+5_*197+10dupGACAAA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1420+5_1420+10dupGACAAA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1420+5_1420+10dupGACAAA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1420+5_1420+10dupGACAAA
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1420+5_1420+10dupGACAAA
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS

15-81582886-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582886
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582886
    reference: chr 15
allele count: 1
allele frequency: 8.800337932976626e-6
allele num: 113632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1420+5G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1420+5G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.569+5G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1420+5G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1420+5G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1420+5G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*197+5G>C
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5853
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1420+5G>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

15-81582899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582899
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582899
    reference: chr 15
allele count: 5
allele frequency: 4.557137388577991e-5
allele num: 109718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1420+18C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*197+18C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1420+18C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.569+18C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1420+18C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1420+18C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1420+18C>T
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14162
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

15-81582904-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582904
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582904
    reference: chr 15
allele count: 4
allele frequency: 3.697951334960432e-5
allele num: 108168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*197+23A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1420+23A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1420+23A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1420+23A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1420+23A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1420+23A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.569+23A>G
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9016
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18071
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20934
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

15-81582908-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582908
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582908
    reference: chr 15
allele count: 3
allele frequency: 2.801172757661207e-5
allele num: 107098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.569+27A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1420+27A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1420+27A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1420+27A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*197+27A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1420+27A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1420+27A>G
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17824
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

15-81582914-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582914
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582914
    reference: chr 15
allele count: 1
allele frequency: 9.694995443352141e-6
allele num: 103146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1420+33T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1420+33T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*197+33T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1420+33T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1420+33T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1420+33T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.569+33T>C
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11523
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4234
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD

15-81582923-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81582923
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81582923
    reference: chr 15
allele count: 1
allele frequency: 1.013253353868601e-5
allele num: 98692
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1420+42T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1420+42T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.569+42T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1420+42T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1420+42T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1420+42T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*197+42T>G
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

15-81584215-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584215
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584215
    reference: chr 15
allele count: 1
allele frequency: 9.398496240601504e-5
allele num: 10640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*198-50A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-682A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-682A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.570-50A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-682A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-682A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1421-50A>G
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

15-81584218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584218
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584218
    reference: chr 15
allele count: 1
allele frequency: 9.410878976096367e-5
allele num: 10626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*198-47C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.570-47C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1421-47C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-679C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-679C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-679C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-679C>T
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

15-81584266-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584266
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584266
    reference: chr 15
allele count: 1
allele frequency: 9.310986964618249e-5
allele num: 10740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.571T>C
  hgvsp: ENST00000560115.1:c.571T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-631T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-631T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*199T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-631T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-631T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.1422T>C
  hgvsp: ENST00000360547.5:c.1422T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
hgvs: c.571T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

15-81584328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584328
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584328
    reference: chr 15
allele count: 2
allele frequency: 1.858736059479554e-4
allele num: 10760
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-569G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*261G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*29G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*29G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-569G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-569G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-569G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4874
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

15-81584748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584748
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584748
    reference: chr 15
allele count: 5
allele frequency: 4.653933504598086e-5
allele num: 107436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-149A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-149A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*449A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-149A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-149A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*449A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*681A>G
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13414
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15545
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5439
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

15-81584750-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584750
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584750
    reference: chr 15
allele count: 1
allele frequency: 9.301460329271696e-6
allele num: 107510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*683T>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*451T>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-147T>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-147T>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*451T>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-147T>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-147T>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11104
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4580
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

15-81584763-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584763
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584763
    reference: chr 15
allele count: 2
allele frequency: 1.849488616397566e-5
allele num: 108138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*464A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-134A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*696A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-134A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*464A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-134A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-134A>T
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23016
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3972
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-81584765-CCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584765
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584763
    reference: chr 15
allele count: 2
allele frequency: 1.849933402397514e-5
allele num: 108112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*469_*470delCA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-129_1421-128delCA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*701_*702delCA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-129_1421-128delCA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-129_1421-128delCA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-129_1421-128delCA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*469_*470delCA
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24315
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: CCA
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

15-81584781-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584781
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584781
    reference: chr 15
allele count: 1
allele frequency: 9.000900090009001e-6
allele num: 111100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*714T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-116T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-116T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*482T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-116T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*482T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-116T>C
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

15-81584786-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584786
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584786
    reference: chr 15
allele count: 1
allele frequency: 8.92140244446427e-6
allele num: 112090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*487A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*719A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-111A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-111A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*487A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-111A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-111A>G
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33489
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7015
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

15-81584797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584797
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584797
    reference: chr 15
allele count: 1
allele frequency: 8.798169980644026e-6
allele num: 113660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*498G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-100G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-100G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-100G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-100G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*730G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*498G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38187
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

15-81584799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584799
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584799
    reference: chr 15
allele count: 93
allele frequency: 8.167208219899886e-4
allele num: 113870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-98T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*500T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*500T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-98T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-98T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-98T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*732T>C
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33905
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14226
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38322
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

15-81584800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584800
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584800
    reference: chr 15
allele count: 2
allele frequency: 1.754816972589759e-5
allele num: 113972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*733G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-97G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-97G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*501G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*501G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-97G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-97G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14293
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

15-81584802-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584802
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584802
    reference: chr 15
allele count: 50
allele frequency: 4.382812363037114e-4
allele num: 114082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-95G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*503G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-95G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*735G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-95G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-95G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*503G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33923
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14336
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2558
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

15-81584806-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584806
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584806
    reference: chr 15
allele count: 1
allele frequency: 8.747375787263821e-6
allele num: 114320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-91T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-91T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*507T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-91T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-91T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*739T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*507T>C
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14455
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 943
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

15-81584807-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584807
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584807
    reference: chr 15
allele count: 1
allele frequency: 8.745998705592191e-6
allele num: 114338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*508G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-90G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*508G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-90G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*740G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-90G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-90G>C
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38632
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

15-81584808-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584808
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584808
    reference: chr 15
allele count: 1
allele frequency: 8.742175752701331e-6
allele num: 114388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*509T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-89T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*509T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-89T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*741T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-89T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-89T>G
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

15-81584811-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584811
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584811
    reference: chr 15
allele count: 11
allele frequency: 9.603464231460948e-5
allele num: 114542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-86T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*512T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*744T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-86T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-86T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-86T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*512T>C
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14542
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

15-81584811-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584811
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584811
    reference: chr 15
allele count: 3
allele frequency: 2.619126608580259e-5
allele num: 114542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-86T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*512T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-86T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*744T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-86T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-86T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*512T>G
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7576
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum

15-81584812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584812
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584812
    reference: chr 15
allele count: 49
allele frequency: 4.277682718161818e-4
allele num: 114548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*513G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-85G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*745G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-85G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-85G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*513G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-85G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 33941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14575
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 9.75e1
  variant carriers: 49
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS

15-81584815-CGTGGCAGTCACAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584815
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584802
    reference: chr 15
allele count: 1
allele frequency: 8.723415391594117e-6
allele num: 114634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38736
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: CGTGGCAGTCACAG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

15-81584816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584816
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584816
    reference: chr 15
allele count: 4
allele frequency: 3.484320557491289e-5
allele num: 114800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*517G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-81G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*517G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*749G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-81G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-81G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-81G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

15-81584818-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584818
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584818
    reference: chr 15
allele count: 1
allele frequency: 8.708070639869031e-6
allele num: 114836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-79G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*751G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-79G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*519G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-79G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-79G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*519G>T
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

15-81584820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584820
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584820
    reference: chr 15
allele count: 13
allele frequency: 1.131300473405737e-4
allele num: 114912
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-77C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*521C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*521C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-77C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*753C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-77C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-77C>T
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/15-81584821-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584821
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584821
    reference: chr 15
allele count: 3
allele frequency: 2.608831765135572e-5
allele num: 114994
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-76A>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*754A>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*522A>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-76A>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*522A>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-76A>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-76A>C
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

15-81584833-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584833
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584833
    reference: chr 15
allele count: 87
allele frequency: 7.517497623779487e-4
allele num: 115730
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-64G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-64G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*534G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*766G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-64G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*534G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-64G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 33807
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5267
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14818
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38745
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

15-81584834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584834
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584834
    reference: chr 15
allele count: 1
allele frequency: 8.64020460004493e-6
allele num: 115738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-63G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-63G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*535G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*767G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*535G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-63G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-63G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/15-81584836-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584836
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584835
    reference: chr 15
allele count: 8
allele frequency: 6.905242805600152e-5
allele num: 115854
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-60delA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*538delA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-60delA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*770delA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*538delA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-60delA
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-60delA
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7638
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: CA
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

15-81584837-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584837
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584837
    reference: chr 15
allele count: 24
allele frequency: 2.070679182771949e-4
allele num: 115904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-60A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*538A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*770A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*538A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-60A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-60A>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-60A>T
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33788
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14912
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38836
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

15-81584839-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584839
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584839
    reference: chr 15
allele count: 1
allele frequency: 8.610149644400819e-6
allele num: 116142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*540G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-58G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*540G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*772G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-58G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-58G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-58G>T
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

15-81584842-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584842
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584842
    reference: chr 15
allele count: 15
allele frequency: 1.287664177182591e-4
allele num: 116490
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-55G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-55G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-55G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*543G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-55G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*543G>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*775G>C
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14945
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33877
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7699
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/15-81584877-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584877
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584877
    reference: chr 15
allele count: 3
allele frequency: 2.532671461857968e-5
allele num: 118452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*578C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-20C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*578C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-20C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-20C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*810C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-20C>A
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7715
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS

15-81584880-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584880
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584880
    reference: chr 15
allele count: 1
allele frequency: 8.437252155717926e-6
allele num: 118522
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-17T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*813T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*581T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-17T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-17T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-17T>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*581T>G
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2796
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

15-81584883-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584883
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584883
    reference: chr 15
allele count: 1
allele frequency: 8.433125316242199e-6
allele num: 118580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*584T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*816T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*584T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-14T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-14T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-14T>C
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-14T>C
  variant of: http://identifiers.org/hgnc/5980
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33701
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

15-81584896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584896
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584896
    reference: chr 15
allele count: 1
allele frequency: 8.412409987213136e-6
allele num: 118872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*829G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*597G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1421-1G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1421-1G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*597G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1421-1G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1421-1G>A
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7743
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37983
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1421-1G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

15-81584899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584899
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584899
    reference: chr 15
allele count: 5
allele frequency: 4.202033784351626e-5
allele num: 118990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*600G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1423G>A
  hgvsp: ENSP00000302935.4:p.Val475Ile
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*600G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1423G>A
  hgvsp: ENSP00000378155.2:p.Val475Ile
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*832G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1423G>A
  hgvsp: ENSP00000458125.1:p.Val475Ile
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1423G>A
  hgvsp: ENSP00000453250.1:p.Val475Ile
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val475Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

15-81584902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584902
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584902
    reference: chr 15
allele count: 2
allele frequency: 1.68019221398928e-5
allele num: 119034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*603A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1426A>G
  hgvsp: ENSP00000302935.4:p.Lys476Glu
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*603A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1426A>G
  hgvsp: ENSP00000453250.1:p.Lys476Glu
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*835A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1426A>G
  hgvsp: ENSP00000458125.1:p.Lys476Glu
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1426A>G
  hgvsp: ENSP00000378155.2:p.Lys476Glu
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys476Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

15-81584914-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584914
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584914
    reference: chr 15
allele count: 1
allele frequency: 8.381667616588997e-6
allele num: 119308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*615A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1438A>G
  hgvsp: ENSP00000458125.1:p.Ser480Gly
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1438A>G
  hgvsp: ENSP00000302935.4:p.Ser480Gly
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*847A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*615A>G
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1438A>G
  hgvsp: ENSP00000453250.1:p.Ser480Gly
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1438A>G
  hgvsp: ENSP00000378155.2:p.Ser480Gly
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser480Gly
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

15-81584925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584925
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584925
    reference: chr 15
allele count: 19130
allele frequency: 1.599953163942927e-1
allele num: 119566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*858C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*626C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1449C>T
  hgvsp: ENST00000302987.4:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1449C>T
  hgvsp: ENST00000559388.1:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*626C>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1449C>T
  hgvsp: ENST00000559383.1:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1449C>T
  hgvsp: ENST00000394660.2:c.1449C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.75e1
  variant carriers: 1432
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.25e1
  variant carriers: 1309
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.25e1
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 5.75e1
  variant carriers: 970
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 7.25e1
  variant carriers: 1443
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 8.75e1
  variant carriers: 1056
genotype depth: GenotypeDepth
  all individuals: 25106
  bin: 2.25e1
  variant carriers: 684
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.25e1
  variant carriers: 827
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 324
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 11798
  bin: 2.75e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 8.25e1
  variant carriers: 1244
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 748
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 484
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 6.75e1
  variant carriers: 1463
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 9.75e1
  variant carriers: 3031
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 3.25e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 668
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 17141
  bin: 9.75e1
  variant carriers: 16547
genotype quality: GenotypeQuality
  all individuals: 5661
  bin: 6.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 8.25e1
  variant carriers: 47
hgvs: p.His483His
num of homozygotes: 2118
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

15-81584926-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584926
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584926
    reference: chr 15
allele count: 4
allele frequency: 3.343587000133743e-5
allele num: 119632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*627G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1450G>A
  hgvsp: ENSP00000378155.2:p.Gly484Arg
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*627G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*859G>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1450G>A
  hgvsp: ENSP00000458125.1:p.Gly484Arg
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1450G>A
  hgvsp: ENSP00000453250.1:p.Gly484Arg
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1450G>A
  hgvsp: ENSP00000302935.4:p.Gly484Arg
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly484Arg
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

15-81584928-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584928
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584928
    reference: chr 15
allele count: 1
allele frequency: 8.355475342992263e-6
allele num: 119682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1452G>T
  hgvsp: ENST00000559388.1:c.1452G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*629G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*861G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*629G>T
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1452G>T
  hgvsp: ENST00000302987.4:c.1452G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1452G>T
  hgvsp: ENST00000394660.2:c.1452G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1452G>T
  hgvsp: ENST00000559383.1:c.1452G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly484Gly
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/15-81584929-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 81584929
    reference: chr 15
  end: Position
    type: ExactPosition
    position: 81584929
    reference: chr 15
allele count: 1
allele frequency: 8.366240546148183e-6
allele num: 119528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000453250
  ensembl transcript: ENST00000559383
  gene symbol: IL16
  hgvsc: ENST00000559383.1:c.1453C>A
  hgvsp: ENST00000559383.1:c.1453C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000458125
  ensembl transcript: ENST00000559388
  gene symbol: IL16
  hgvsc: ENST00000559388.1:c.1453C>A
  hgvsp: ENST00000559388.1:c.1453C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000454636
  ensembl transcript: ENST00000560115
  gene symbol: IL16
  hgvsc: ENST00000560115.1:c.*630C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000456972
  ensembl transcript: ENST00000360547
  gene symbol: IL16
  hgvsc: ENST00000360547.5:c.*630C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000452738
  ensembl transcript: ENST00000560241
  gene symbol: IL16
  hgvsc: ENST00000560241.1:c.*862C>A
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000302935
  ensembl transcript: ENST00000302987
  gene symbol: IL16
  hgvsc: ENST00000302987.4:c.1453C>A
  hgvsp: ENST00000302987.4:c.1453C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172349
  ensembl protein: ENSP00000378155
  ensembl transcript: ENST00000394660
  gene symbol: IL16
  hgvsc: ENST00000394660.2:c.1453C>A
  hgvsp: ENST00000394660.2:c.1453C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5980
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg485Arg
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4566
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11533
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30625
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 3.310278e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

FS
type: SiteQuality
SIO_000300: 2.043e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 1.329e1

GenotypeQuality
all individuals: 30619
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3486
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4333
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

FS
type: SiteQuality
SIO_000300: 4.166e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

DP
type: SiteQuality
SIO_000300: 3.29801e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.136e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 1.507071643867378e-3
allele num: 8626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.77e-1

DP
type: SiteQuality
SIO_000300: 3.293008e6

BaseQRankSum
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SIO_000300: 3.26e0

QD
type: SiteQuality
SIO_000300: 1.236e1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 2.318571759795966e-4
allele num: 8626
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African
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allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

South Asian
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allele frequency: 6.151574803149606e-5
allele num: 16256
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.952596953948752e-4
allele num: 66578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.84e-1

BaseQRankSum
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SIO_000300: -3.406e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.396e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.34661998384056e-4
allele num: 7426
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 2698
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.43042e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

InbreedingCoeff
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SIO_000300: -3.1e-2

BaseQRankSum
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SIO_000300: -4.468e0

VQSLOD
type: SiteQuality
SIO_000300: -3.39e-1

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.706449221645663e-4
allele num: 2698
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.43609e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.03e-2

BaseQRankSum
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SIO_000300: -1.231e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.309e1

FS
type: SiteQuality
SIO_000300: 3.136e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2770
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 132
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South Asian
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allele frequency: 1.334400854016547e-4
allele num: 7494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

DP
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SIO_000300: 1.53046e5

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

FS
type: SiteQuality
SIO_000300: 7.58e-1

QD
type: SiteQuality
SIO_000300: 7.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 94
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 4.007480630510286e-4
allele num: 7486
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.53343e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.57e-2

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.927e1

ReadPosRankSum
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BaseQRankSum
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QD
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SIO_000300: 1.425e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2792
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Latino
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allele frequency: 0.0e0
allele num: 94
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South Asian
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allele frequency: 1.336541031809677e-4
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-2

MQ
type: SiteQuality
SIO_000300: 5.947e1

MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
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Latino
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South Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 7.042253521126761e-3
allele num: 142
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
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Other
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South Asian
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European (Non-Finnish)
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African
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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DP
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MQRankSum
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BaseQRankSum
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FS
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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allele frequency: 1.669950903443439e-5
allele num: 59882
num of homozygotes: 0

European (Finnish)
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Other
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African
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allele frequency: 0.0e0
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Latino
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.345582e6

VQSLOD
type: SiteQuality
SIO_000300: 4.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

QD
type: SiteQuality
SIO_000300: 1.009e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.241e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14130
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.871668311944718e-5
allele num: 10130
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.129999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.376e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.059e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 8.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

DP
type: SiteQuality
SIO_000300: 1.364343e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.079144839303412e-5
allele num: 14126
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

DP
type: SiteQuality
SIO_000300: 1.369471e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.142e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -5.722e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.651036851142517e-5
allele num: 60568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.427354e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.342e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.553e0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.647283629295292e-5
allele num: 60706
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14266
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

DP
type: SiteQuality
SIO_000300: 1.441492e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.287e0

QD
type: SiteQuality
SIO_000300: 1.026e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.971556051310653e-5
allele num: 14344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61070
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.801e0

DP
type: SiteQuality
SIO_000300: 1.466954e6

MQRankSum
type: SiteQuality
SIO_000300: 9.96e-1

QD
type: SiteQuality
SIO_000300: 1.727e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.914e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.602923732888789e-5
allele num: 62386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.699e1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.256e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQRankSum
type: SiteQuality
SIO_000300: -1.307e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.969e0

DP
type: SiteQuality
SIO_000300: 1.538536e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9412
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523322060750084e-5
allele num: 65646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.666275e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 6

African
type: Population
allele count: 2
allele frequency: 2.06782464846981e-4
allele num: 9672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015317814497648e-5
allele num: 66328
num of homozygotes: 0

South Asian
type: Population
allele count: 1232
allele frequency: 7.647423960273123e-2
allele num: 16110
num of homozygotes: 58

East Asian
type: Population
allele count: 2
allele frequency: 2.332089552238806e-4
allele num: 8576
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.053370786516854e-3
allele num: 11392
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.494382022471911e-3
allele num: 890
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.975e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

DP
type: SiteQuality
SIO_000300: 1.727954e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.37e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 37485
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GenotypeQuality
all individuals: 6439
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506977304921788e-5
allele num: 66358
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.65e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.77e-1

DP
type: SiteQuality
SIO_000300: 1.723034e6

QD
type: SiteQuality
SIO_000300: 1.083e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
all individuals: 850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.523931598154236e-5
allele num: 66314
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

DP
type: SiteQuality
SIO_000300: 1.724871e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 36

GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 538

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 81

GenotypeQuality
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bin: 6.75e1
variant carriers: 509

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 35

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 22

GenotypeQuality
all individuals: 41534
bin: 9.75e1
variant carriers: 40532

GenotypeQuality
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bin: 8.25e1
variant carriers: 605

GenotypeQuality
all individuals: 432
bin: 5.25e1
variant carriers: 330

GenotypeQuality
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bin: 6.25e1
variant carriers: 423

GenotypeQuality
all individuals: 671
bin: 9.25e1
variant carriers: 640

GenotypeQuality
all individuals: 287
bin: 4.75e1
variant carriers: 229

European (Finnish)
type: Population
allele count: 3466
allele frequency: 5.286760219646126e-1
allele num: 6556
num of homozygotes: 928

East Asian
type: Population
allele count: 4595
allele frequency: 5.373012160898035e-1
allele num: 8552
num of homozygotes: 1233

South Asian
type: Population
allele count: 9762
allele frequency: 5.969181851534793e-1
allele num: 16354
num of homozygotes: 2977

African
type: Population
allele count: 6739
allele frequency: 6.914631643751282e-1
allele num: 9746
num of homozygotes: 2327

Other
type: Population
allele count: 467
allele frequency: 5.212053571428571e-1
allele num: 896
num of homozygotes: 126

Latino
type: Population
allele count: 5816
allele frequency: 5.086583872660486e-1
allele num: 11434
num of homozygotes: 1485

European (Non-Finnish)
type: Population
allele count: 30357
allele frequency: 4.582742066966577e-1
allele num: 66242
num of homozygotes: 6972

DP
type: SiteQuality
SIO_000300: 2.988525e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

QD
type: SiteQuality
SIO_000300: 1.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

FS
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.217e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 37948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4256
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15076
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.09090909090909e-5
allele num: 11000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.517e0

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.677e0

MQ
type: SiteQuality
SIO_000300: 4.798e1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

DP
type: SiteQuality
SIO_000300: 1.872171e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 8.039e0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34741
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variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1295
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 4254
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.737636437137851e-5
allele num: 14842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63590
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

FS
type: SiteQuality
SIO_000300: 3.757e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.82438e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.571e1

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3989
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26665
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
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variant carriers: 0

GenotypeQuality
all individuals: 455
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variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.129023866814073e-5
allele num: 61508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.657774e6

MQRankSum
type: SiteQuality
SIO_000300: -3.05e-1

FS
type: SiteQuality
SIO_000300: 3.785e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.404e0

QD
type: SiteQuality
SIO_000300: 1.298e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4364
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variant carriers: 0

GenotypeQuality
all individuals: 1861
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variant carriers: 0

GenotypeQuality
all individuals: 16804
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variant carriers: 0

GenotypeQuality
all individuals: 654
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variant carriers: 0

GenotypeQuality
all individuals: 4240
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 133
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variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14108
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.167958656330749e-4
allele num: 7740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

FS
type: SiteQuality
SIO_000300: 3.875e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 1.569623e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

QD
type: SiteQuality
SIO_000300: 1.41e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3123
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4237
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 856
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GenotypeQuality
all individuals: 100
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.986867914491838e-5
allele num: 60158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.52204e6

QD
type: SiteQuality
SIO_000300: 1.303e1

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

GenotypeQuality
all individuals: 4912
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17757
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5970
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.720163759589913e-5
allele num: 58134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.175e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

DP
type: SiteQuality
SIO_000300: 1.395883e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.536e1

GenotypeQuality
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2495
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.817385866166354e-5
allele num: 12792
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.222e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

QD
type: SiteQuality
SIO_000300: 1.16e1

VQSLOD
type: SiteQuality
SIO_000300: 5.71e-1

DP
type: SiteQuality
SIO_000300: 1.332167e6

GenotypeQuality
all individuals: 535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
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GenotypeQuality
all individuals: 204
bin: 5.75e1
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GenotypeQuality
all individuals: 1038
bin: 2.5e0
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GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
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GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.75e1
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GenotypeQuality
all individuals: 874
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.773584905660377e-4
allele num: 2650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -5.43e-2

FS
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MQRankSum
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DP
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 4.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

QD
type: SiteQuality
SIO_000300: 9.06e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2646
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

South Asian
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allele frequency: 1.342281879194631e-4
allele num: 7450
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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SIO_000300: -8.66e-1

MQ
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SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 3.802e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.39e-2

DP
type: SiteQuality
SIO_000300: 1.53381e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 92
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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DP
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BaseQRankSum
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QD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -4.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-2

MQ
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SIO_000300: 5.852e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 2724
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.665245202558635e-4
allele num: 7504
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.850000000000001e-2

FS
type: SiteQuality
SIO_000300: 8.351000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.969e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.68437e5

QD
type: SiteQuality
SIO_000300: 1.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.214607175003214e-4
allele num: 15554
num of homozygotes: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

FS
type: SiteQuality
SIO_000300: 5.253e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.27e-1

DP
type: SiteQuality
SIO_000300: 1.153212e6

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.697447039652363e-5
allele num: 58912
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 3.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

DP
type: SiteQuality
SIO_000300: 1.157371e6

VQSLOD
type: SiteQuality
SIO_000300: 5.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59204
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10762
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South Asian
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allele frequency: 1.278772378516624e-4
allele num: 15640
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7586
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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QD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7586
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African
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Other
type: Population
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allele frequency: 0.0e0
allele num: 820
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.378492516639076e-5
allele num: 59198
num of homozygotes: 0

South Asian
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num of homozygotes: 0

ClippingRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 9.025270758122743e-5
allele num: 11080
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.9e0

DP
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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FS
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 61276
num of homozygotes: 0

East Asian
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Latino
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Other
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6354
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MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.213297743266198e-4
allele num: 8242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62174
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

DP
type: SiteQuality
SIO_000300: 1.421267e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

FS
type: SiteQuality
SIO_000300: 1.388e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.506e1

GenotypeQuality
all individuals: 2548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 636
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2711
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 89
allele frequency: 1.050023596035866e-2
allele num: 8476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.210375935021991e-5
allele num: 62298
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.815232722143864e-5
allele num: 11344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

QD
type: SiteQuality
SIO_000300: 1.46e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

DP
type: SiteQuality
SIO_000300: 1.425821e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1295
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.207389826159471e-5
allele num: 62356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

FS
type: SiteQuality
SIO_000300: 2.779e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

QD
type: SiteQuality
SIO_000300: 1.135e1

MQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

DP
type: SiteQuality
SIO_000300: 1.426254e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.105e0

GenotypeQuality
all individuals: 333
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38452
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 9.75e1
variant carriers: 49

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.761183515322297e-4
allele num: 11356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

African
type: Population
allele count: 47
allele frequency: 5.526810912511759e-3
allele num: 8504
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.191183754333828e-5
allele num: 16152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 1.428724e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

FS
type: SiteQuality
SIO_000300: 2.968e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.444e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 1.09e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38711
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.185822095756526e-5
allele num: 16166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.218e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

DP
type: SiteQuality
SIO_000300: 1.432734e6

QD
type: SiteQuality
SIO_000300: 1.159e1

MQRankSum
type: SiteQuality
SIO_000300: -1.198e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.61e-1

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597903550541689e-5
allele num: 62582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16166
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

QD
type: SiteQuality
SIO_000300: 1.626e1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 2.13e0

VQSLOD
type: SiteQuality
SIO_000300: -9.975000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.43324e6

GenotypeQuality
all individuals: 2122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7557
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.183527083848628e-5
allele num: 16172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 1.334e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.668e0

DP
type: SiteQuality
SIO_000300: 1.433863e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

QD
type: SiteQuality
SIO_000300: 7.21e0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 653
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7576
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.235941169200346e-4
allele num: 16182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.27591706539075e-4
allele num: 62700
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.76731544800982e-5
allele num: 11406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.492e0

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.702e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 1.436218e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 1.172e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeQuality
all individuals: 305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.415458937198068e-4
allele num: 8280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.702e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.172e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 1.492e0

DP
type: SiteQuality
SIO_000300: 1.436218e6

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

GenotypeQuality
all individuals: 299
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38682
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2738
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.17457962413452e-3
allele num: 16176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.711237281107461e-4
allele num: 62702
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.640666082383874e-4
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.325581395348837e-3
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.227e0

DP
type: SiteQuality
SIO_000300: 1.437818e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.188e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.207146306132303e-4
allele num: 8284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62754
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.431e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

QD
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

DP
type: SiteQuality
SIO_000300: 1.439293e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 862
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.753501400560224e-5
allele num: 11424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.772054846817039e-5
allele num: 62866
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

FS
type: SiteQuality
SIO_000300: 6.536e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 112
bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62898
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.181233774261343e-5
allele num: 16178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.649e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.440941e6

FS
type: SiteQuality
SIO_000300: 5.226e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.906577693040991e-4
allele num: 62940
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8296
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.668e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.442621e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.174502396749309e-5
allele num: 63002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.68e-1

FS
type: SiteQuality
SIO_000300: 1.791e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 1.442998e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 88

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 101
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.189650903689032e-5
allele num: 16156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63506
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.799616030717543e-4
allele num: 8334
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.368338284116722e-4
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 77
allele frequency: 8.722247394653375e-3
allele num: 8828
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.756e0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.253e1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 1.450143e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8832
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
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South Asian
type: Population
allele count: 1
allele frequency: 6.191950464396285e-5
allele num: 16150
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.577e0

QD
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SIO_000300: 1.163e1

DP
type: SiteQuality
SIO_000300: 1.448008e6

VQSLOD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 8
allele frequency: 1.258138583965024e-4
allele num: 63586
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.449505e6

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.6e-2

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8878
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.772873042822109e-4
allele num: 63612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63762
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.201935003721161e-5
allele num: 16124
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
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QD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.766e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 38932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.343530294034934e-4
allele num: 64006
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

FS
type: SiteQuality
SIO_000300: 2.607e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

QD
type: SiteQuality
SIO_000300: 1.187e1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.453723e6

GenotypeQuality
all individuals: 2789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 676
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1780
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.882530120481928e-4
allele num: 15936
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.53e-2

QD
type: SiteQuality
SIO_000300: 1.718e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.884e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 1.460134e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.3953e1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 758
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526577718071627e-5
allele num: 65506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15948
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.017e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

DP
type: SiteQuality
SIO_000300: 1.459994e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

GenotypeQuality
all individuals: 678
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7729
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2796
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5253668507276e-5
allele num: 65558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.209e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.87e-1

DP
type: SiteQuality
SIO_000300: 1.460282e6

QD
type: SiteQuality
SIO_000300: 1.106e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2806
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520357588104722e-5
allele num: 65774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.482e0

DP
type: SiteQuality
SIO_000300: 1.462853e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.807e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 2.37e1

VQSLOD
type: SiteQuality
SIO_000300: -1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.08e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 7757
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.074227054607301e-5
allele num: 65852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.504e0

DP
type: SiteQuality
SIO_000300: 1.464633e6

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

FS
type: SiteQuality
SIO_000300: 1.742e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

GenotypeQuality
all individuals: 555
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2679
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.330459100442787e-4
allele num: 8582
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.937e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

QD
type: SiteQuality
SIO_000300: 1.604e1

DP
type: SiteQuality
SIO_000300: 1.465379e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.3e-3

GenotypeQuality
all individuals: 2827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2676
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7790
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.029654036243822e-4
allele num: 9712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66056
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.789e0

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.469155e6

QD
type: SiteQuality
SIO_000300: 1.486e1

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 292
bin: 3.75e1
variant carriers: 33

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 47

GenotypeQuality
all individuals: 789
bin: 2.25e1
variant carriers: 13

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1768
bin: 7.75e1
variant carriers: 50

GenotypeQuality
all individuals: 202
bin: 5.25e1
variant carriers: 43

GenotypeQuality
all individuals: 29433
bin: 6.25e1
variant carriers: 54

GenotypeQuality
all individuals: 408
bin: 9.25e1
variant carriers: 40

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1874
bin: 7.25e1
variant carriers: 45

Other
type: Population
allele count: 122
allele frequency: 1.380090497737557e-1
allele num: 884
num of homozygotes: 8

Latino
type: Population
allele count: 3884
allele frequency: 3.361606370088281e-1
allele num: 11554
num of homozygotes: 682

East Asian
type: Population
allele count: 1452
allele frequency: 1.686411149825784e-1
allele num: 8610
num of homozygotes: 127

European (Non-Finnish)
type: Population
allele count: 6972
allele frequency: 1.053394977789865e-1
allele num: 66186
num of homozygotes: 354

African
type: Population
allele count: 704
allele frequency: 7.219031993437244e-2
allele num: 9752
num of homozygotes: 30

European (Finnish)
type: Population
allele count: 860
allele frequency: 1.300665456745312e-1
allele num: 6612
num of homozygotes: 63

South Asian
type: Population
allele count: 5136
allele frequency: 3.216432865731463e-1
allele num: 15968
num of homozygotes: 854

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.259917e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.15e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.45e-2

QD
type: SiteQuality
SIO_000300: 1.586e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

GenotypeQuality
all individuals: 1783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8959
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509707418702255e-5
allele num: 66238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.480278422273782e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.485e1

DP
type: SiteQuality
SIO_000300: 1.552677e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8969
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66264
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

MQ
type: SiteQuality
SIO_000300: 5.611e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.657e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: -8.912e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.455e1

DP
type: SiteQuality
SIO_000300: 1.55263e6