16-775893-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775893
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775893
    reference: chr 16
allele count: 1
allele frequency: 1.425801300330786e-5
allele num: 70136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.257-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.244-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.251-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.181-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.492-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.181-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.258-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.287-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.243-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.249-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-273-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.387-13T>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.257-13T>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

16-775894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775894
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775894
    reference: chr 16
allele count: 2
allele frequency: 2.88217661978326e-5
allele num: 69392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.251-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.492-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.181-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.244-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.257-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.257-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.258-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.387-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-273-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.287-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.181-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.243-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.249-14C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16040
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21422
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

16-775901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775901
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775901
    reference: chr 16
allele count: 1
allele frequency: 1.536334306345061e-5
allele num: 65090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.257-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.181-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.492-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.249-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.387-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.181-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.244-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.287-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-273-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.257-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.258-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.243-21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.251-21C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

16-775906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775906
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775906
    reference: chr 16
allele count: 4
allele frequency: 6.598482349059716e-5
allele num: 60620
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.181-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.258-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.287-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.257-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.251-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.387-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.244-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.249-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.257-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.181-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-273-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.243-26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.492-26G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15889
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-775907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775907
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775907
    reference: chr 16
allele count: 24
allele frequency: 3.963797317830481e-4
allele num: 60548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.258-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-273-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.257-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.249-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.387-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.243-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.181-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.257-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.492-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.251-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.181-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.244-27C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.287-27C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23098
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15853
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

16-775913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775913
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775913
    reference: chr 16
allele count: 1
allele frequency: 1.84114592922635e-5
allele num: 54314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.387-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.181-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-273-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.257-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.249-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.181-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.251-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.243-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.244-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.287-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.258-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.492-33C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.257-33C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS

16-775917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775917
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775917
    reference: chr 16
allele count: 1
allele frequency: 1.944163620810327e-5
allele num: 51436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.251-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.387-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-273-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.249-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.244-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.181-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.258-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.492-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.287-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.257-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.243-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.181-37G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.257-37G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13405
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

16-775931-CCCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775931
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775928
    reference: chr 16
allele count: 1
allele frequency: 2.319862664130283e-5
allele num: 43106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+32_257+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+32_491+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+32_386+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+32_180+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+32_248+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+32_256+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+32_256+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+32_180+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+32_-274+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+32_243+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+32_250+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+32_242+34delAGG
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+32_286+34delAGG
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10224
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23291
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: CCCT
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

16-775937-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775937
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775937
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 39058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+29A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+29A>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16521
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/16-775938-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775938
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775938
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 37974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+28G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+28G>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22354
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

16-775939-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775939
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775939
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 38038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+27T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+27T>C
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22393
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/16-775940-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775940
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775940
    reference: chr 16
allele count: 802
allele frequency: 2.159513167106468e-2
allele num: 37138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+26G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+26G>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17392
  bin: 2.5e0
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 22311
  bin: 7.5e0
  variant carriers: 585
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 1.25e1
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
num of homozygotes: 11
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

16-775940-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775940
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775940
    reference: chr 16
allele count: 18
allele frequency: 4.846787656847434e-4
allele num: 37138
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+26G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+26G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22311
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS

16-775941-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775941
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775941
    reference: chr 16
allele count: 1
allele frequency: 2.858613000971929e-5
allele num: 34982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+25C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+25C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6896
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

16-775946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775946
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775946
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 33334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+20G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+20G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21461
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

16-775947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775947
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775947
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 33966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+19C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+19C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21604
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

16-775947-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775947
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775947
    reference: chr 16
allele count: 9690
allele frequency: 2.852852852852853e-1
allele num: 33966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+19C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+19C>G
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 9.75e1
  variant carriers: 1536
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.75e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 18351
  bin: 2.5e0
  variant carriers: 1275
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 1.75e1
  variant carriers: 613
genotype depth: GenotypeDepth
  all individuals: 21604
  bin: 7.5e0
  variant carriers: 7576
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 2.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 1.25e1
  variant carriers: 3438
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.25e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.25e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 217
genotype quality: GenotypeQuality
num of homozygotes: 1286
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-775952-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775952
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775952
    reference: chr 16
allele count: 3
allele frequency: 9.684917355371901e-5
allele num: 30976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+14C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20769
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21654
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/16-775954-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775954
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775954
    reference: chr 16
allele count: 8419
allele frequency: 2.747894771199165e-1
allele num: 30638
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+12G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+12G>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 20328
  bin: 7.5e0
  variant carriers: 7929
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 1.25e1
  variant carriers: 2594
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.75e1
  variant carriers: 421
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 5.75e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 3.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 21095
  bin: 2.5e0
  variant carriers: 1949
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 2.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.75e1
  variant carriers: 259
genotype quality: GenotypeQuality
num of homozygotes: 1115
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/16-775955-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775955
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775955
    reference: chr 16
allele count: 8310
allele frequency: 2.758048456687687e-1
allele num: 30130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+11G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+11G>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 394
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 2.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 240
genotype depth: GenotypeDepth
  all individuals: 21693
  bin: 2.5e0
  variant carriers: 2041
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 9.75e1
  variant carriers: 1570
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 19782
  bin: 7.5e0
  variant carriers: 7933
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 1.25e1
  variant carriers: 2524
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 3.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
num of homozygotes: 1101
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

16-775956-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775956
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775956
    reference: chr 16
allele count: 1
allele frequency: 3.716643127926857e-5
allele num: 26906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+10G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+10G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

16-775957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775957
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775957
    reference: chr 16
allele count: 3
allele frequency: 1.116071428571429e-4
allele num: 26880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+9G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+9G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16447
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

16-775958-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775958
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775958
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 26514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+8T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+8T>C
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28155
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15864
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.180+8T>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

16-775960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775960
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775960
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 25524
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+6T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+6T>C
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29082
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.180+6T>C
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/16-775964-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775964
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775964
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 24806
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248+2T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243+2T>G
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: splice donor
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30252
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.180+2T>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

16-775966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775966
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775966
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 24118
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.180G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.256G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.257G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.180G>A
  hgvsp: ENST00000293889.6:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.386G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.256G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.491G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.286G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.250G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.242G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.243G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-274G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.248G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12319
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.180G>A
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-775981-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775981
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775981
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 22404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-289G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.241G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.233G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.476G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.165G>T
  hgvsp: ENSP00000293889.6:p.Lys55Asn
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.371G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.242G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.235G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.271G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.228G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.241G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.165G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.227G>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys55Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

16-775985-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775985
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775985
    reference: chr 16
allele count: 1
allele frequency: 4.542563823021714e-5
allele num: 22014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.161A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.229A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.267A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.231A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.237A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-293A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.367A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.472A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.161A>G
  hgvsp: ENSP00000293889.6:p.Asn54Ser
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.224A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.237A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.223A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.238A>G
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn54Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

16-775990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 775990
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 775990
    reference: chr 16
allele count: 1
allele frequency: 4.616805170821791e-5
allele num: 21660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.262G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.219G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.156G>A
  hgvsp: ENST00000293889.6:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.224G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.232G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.226G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.467G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.233G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.362G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.218G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.156G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-298G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.232G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34840
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala52Ala
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

16-776001-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776001
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776001
    reference: chr 16
allele count: 1
allele frequency: 4.734400151500805e-5
allele num: 21122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.221C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.145C>A
  hgvsp: ENSP00000293889.6:p.Pro49Thr
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.145C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.351C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.456C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.251C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-309C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.222C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.213C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.221C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.215C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.208C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.207C>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34553
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro49Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

16-776005-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776005
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776005
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 20996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-313C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.218C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.141C>T
  hgvsp: ENST00000293889.6:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.204C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.211C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.217C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.347C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.247C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.141C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.452C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.217C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.203C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.209C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34114
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val47Val
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

16-776009-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776009
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776009
    reference: chr 16
allele count: 1
allele frequency: 4.783773440489859e-5
allele num: 20904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.213A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.448A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.200A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.243A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.343A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.207A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.137A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.137A>T
  hgvsp: ENSP00000293889.6:p.Glu46Val
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.214A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.199A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-317A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.213A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.205A>T
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu46Val
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

16-776020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776020
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776020
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 20716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.126C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.196C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.332C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.189C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.202C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.437C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.203C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-328C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.232C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.126C>G
  hgvsp: ENSP00000293889.6:p.Ser42Arg
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.202C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.194C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.188C>G
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32178
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser42Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

16-776037-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776037
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776037
    reference: chr 16
allele count: 3
allele frequency: 1.458576429404901e-4
allele num: 20568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.215G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.420G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.186G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.177G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.179G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.109G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.185G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.109G>A
  hgvsp: ENSP00000293889.6:p.Ala37Thr
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.185G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.171G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.315G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.172G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-345G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala37Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

16-776068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776068
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776068
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 20520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.389G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.140G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.155G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-376G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.284G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.148G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.141G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.154G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.146G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.78G>A
  hgvsp: ENST00000293889.6:c.78G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.154G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.78G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.184G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24052
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys26Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

16-776085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776085
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776085
    reference: chr 16
allele count: 1
allele frequency: 4.87044613286577e-5
allele num: 20532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61G>A
  hgvsp: ENSP00000293889.6:p.Val21Ile
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.372G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val21Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

16-776098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776098
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776098
    reference: chr 16
allele count: 1
allele frequency: 4.861921431349669e-5
allele num: 20568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.359G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-13G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-13G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

16-776099-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776099
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776099
    reference: chr 16
allele count: 2
allele frequency: 9.721952167995334e-5
allele num: 20572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.358C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-14C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-14C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20020
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

16-776099-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776099
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776099
    reference: chr 16
allele count: 1
allele frequency: 4.860976083997667e-5
allele num: 20572
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.358C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-14C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-14C>G
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20020
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

16-776118-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776118
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776118
    reference: chr 16
allele count: 2
allele frequency: 9.646922631680494e-5
allele num: 20732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.339C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-33C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-33C>A
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17852
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

16-776133-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776133
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776133
    reference: chr 16
allele count: 1
allele frequency: 4.797083373309028e-5
allele num: 20846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.324A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-48A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-48A>G
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15707
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

16-776147-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776147
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776147
    reference: chr 16
allele count: 1
allele frequency: 4.766444232602478e-5
allele num: 20980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.310G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-62G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-62G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS

16-776164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776164
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776164
    reference: chr 16
allele count: 23
allele frequency: 1.09284424593747e-3
allele num: 21046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.293G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-79G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-79G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

16-776165-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776165
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776165
    reference: chr 16
allele count: 2
allele frequency: 9.509319132750095e-5
allele num: 21032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.292C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-80C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-80C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

16-776171-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776171
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776171
    reference: chr 16
allele count: 4
allele frequency: 1.899335232668566e-4
allele num: 21060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.286G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-86G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-86G>C
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

16-776180-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776180
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776180
    reference: chr 16
allele count: 3
allele frequency: 1.423420003795787e-4
allele num: 21076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.277A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-95A>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-95A>T
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ

16-776183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776183
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776183
    reference: chr 16
allele count: 2
allele frequency: 9.485866059571239e-5
allele num: 21084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.274C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-98C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-98C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

16-776183-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776183
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776183
    reference: chr 16
allele count: 4
allele frequency: 1.897173211914248e-4
allele num: 21084
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.274C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-98C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-98C>G
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

16-776185-TGTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776185
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776182
    reference: chr 16
allele count: 1
allele frequency: 4.743382980741865e-5
allele num: 21082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-103_137-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-103_129-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-103_-393-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-103_131-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-103_138-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-103_137-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-103_61-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-103_61-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-103_124-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.269_271delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-103_267-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-103_167-101delTAC
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-103_123-101delTAC
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: TGTA
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP

16-776189-A-ATAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776189
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776192
    reference: chr 16
allele count: 1
allele frequency: 4.74743638435245e-5
allele num: 21064
alternate allele: ATAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-105_124-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-105_131-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-105_137-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.267_268insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-105_61-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-105_267-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-105_123-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-105_129-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-105_-393-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-105_167-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-105_137-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-105_61-104insGTA
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-105_138-104insGTA
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

16-776195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776195
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776195
    reference: chr 16
allele count: 23
allele frequency: 1.094196003805899e-3
allele num: 21020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.137-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.61-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.262G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.137-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.124-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.61-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.138-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.123-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.131-110G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-110G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/16-776200-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776200
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776200
    reference: chr 16
allele count: 0
allele frequency: 0.0e0
allele num: 21004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+108G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-115G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-115G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.257G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+108G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+108G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+108G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+108G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+108G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+108G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-115G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+108G>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-115G>T
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

16-776203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776203
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776203
    reference: chr 16
allele count: 7
allele frequency: 3.333968374928558e-4
allele num: 20996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+105C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+105C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+105C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+105C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+105C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-118C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+105C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+105C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.254C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-118C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+105C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-118C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-118C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

16-776217-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776217
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776217
    reference: chr 16
allele count: 2
allele frequency: 9.609840476648087e-5
allele num: 20812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+91G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+91G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+91G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-132G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+91G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-132G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.240G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-132G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+91G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+91G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+91G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+91G>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-132G>C
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

16-776227-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776227
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776227
    reference: chr 16
allele count: 1
allele frequency: 4.839802536056529e-5
allele num: 20662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+81C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+81C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+81C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+81C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+81C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+81C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-142C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.230C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+81C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+81C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-142C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-142C>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-142C>A
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

16-776234-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776234
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776234
    reference: chr 16
allele count: 24
allele frequency: 1.17359413202934e-3
allele num: 20450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+74C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.223C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+74C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-149C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+74C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-149C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+74C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-149C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+74C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-149C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+74C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+74C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+74C>G
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

16-776239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776239
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776239
    reference: chr 16
allele count: 971
allele frequency: 4.737509758001561e-2
allele num: 20496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+69G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+69G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+69G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-154G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+69G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+69G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+69G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.218G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-154G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+69G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-154G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+69G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-154G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 2.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 7.5e0
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
num of homozygotes: 38
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

16-776244-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776244
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776244
    reference: chr 16
allele count: 5
allele frequency: 2.470111649046537e-4
allele num: 20242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+64C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+64C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-159C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.213C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+64C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+64C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-159C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-159C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+64C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+64C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-159C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+64C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+64C>G
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

16-776258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776258
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776258
    reference: chr 16
allele count: 1
allele frequency: 5.036261079774375e-5
allele num: 19856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.199G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+50G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+50G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+50G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-173G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-173G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+50G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+50G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-173G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+50G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+50G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+50G>A
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-173G>A
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

16-776287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776287
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776287
    reference: chr 16
allele count: 2
allele frequency: 1.074460083807887e-4
allele num: 18614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-202C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-202C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-202C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-202C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.170C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+21C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+21C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

16-776288-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776288
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776288
    reference: chr 16
allele count: 2
allele frequency: 1.081782778018174e-4
allele num: 18488
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+20C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+20C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-203C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+20C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-203C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+20C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+20C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-203C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.169C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+20C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+20C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+20C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-203C>G
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

16-776292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776292
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776292
    reference: chr 16
allele count: 1
allele frequency: 5.431830526887561e-5
allele num: 18410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-207C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137+16C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136+16C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122+16C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-207C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136+16C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123+16C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.165C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60+16C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130+16C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60+16C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-207C>T
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-207C>T
  variant of: http://identifiers.org/hgnc/14153
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

16-776308-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776308
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776308
    reference: chr 16
allele count: 20
allele frequency: 1.145475372279496e-3
allele num: 17460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-223T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.60T>C
  hgvsp: ENST00000293889.6:c.60T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.149T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.60T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.130T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.137T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.122T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-223T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.136T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.123T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-223T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.136T>C
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-223T>C
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.60T>C
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

16-776312-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776312
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776312
    reference: chr 16
allele count: 1
allele frequency: 6.249218847644044e-5
allele num: 16002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.126A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.119A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-227A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.56A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.145A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.118A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-227A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.56A>G
  hgvsp: ENSP00000293889.6:p.Glu19Gly
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.133A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.132A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.132A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-227A>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-227A>G
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu19Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/16-776315-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776315
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776315
    reference: chr 16
allele count: 33
allele frequency: 2.329192546583851e-3
allele num: 14168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.130T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-230T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.53T>G
  hgvsp: ENSP00000293889.6:p.Val18Gly
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.142T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.123T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.129T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.53T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-230T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.115T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.129T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-230T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.116T>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-230T>G
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val18Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

16-776322-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 776322
    reference: chr 16
  end: Position
    type: ExactPosition
    position: 776322
    reference: chr 16
allele count: 1
allele frequency: 5.950255861002023e-5
allele num: 16806
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000463539
  gene symbol: CCDC78
  hgvsc: ENST00000463539.1:n.109C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000466708
  gene symbol: CCDC78
  hgvsc: ENST00000466708.1:n.267-237C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000485091
  gene symbol: CCDC78
  hgvsc: ENST00000485091.1:n.108C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000460023
  gene symbol: CCDC78
  hgvsc: ENST00000460023.1:n.46C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000482878
  gene symbol: CCDC78
  hgvsc: ENST00000482878.1:n.135C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000478979
  gene symbol: CCDC78
  hgvsc: ENST00000478979.1:n.122C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000538176
  gene symbol: CCDC78
  hgvsc: ENST00000538176.1:n.116C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000293889
  ensembl transcript: ENST00000293889
  gene symbol: CCDC78
  hgvsc: ENST00000293889.6:c.46C>G
  hgvsp: ENSP00000293889.6:p.Arg16Gly
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000481804
  gene symbol: CCDC78
  hgvsc: ENST00000481804.1:n.122C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000439619
  gene symbol: CCDC78
  hgvsc: ENST00000439619.2:n.123C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000474647
  gene symbol: CCDC78
  hgvsc: ENST00000474647.1:n.129-237C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl protein: ENSP00000458590
  ensembl transcript: ENST00000423653
  gene symbol: CCDC78
  hgvsc: ENST00000423653.1:c.-393-237C>G
  variant of: http://identifiers.org/hgnc/14153
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000162004
  ensembl transcript: ENST00000471861
  gene symbol: CCDC78
  hgvsc: ENST00000471861.1:n.167-237C>G
  variant of: http://identifiers.org/hgnc/14153
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg16Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G

GenotypeDepth
all individuals: 78
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 754
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3548
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2605
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.309788931361143e-5
allele num: 12034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37446
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

DP
type: SiteQuality
SIO_000300: 1.012645e6

MQ
type: SiteQuality
SIO_000300: 5.845e1

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.082e1

VQSLOD
type: SiteQuality
SIO_000300: -1.324e0

FS
type: SiteQuality
SIO_000300: 9.731999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e-1

GenotypeDepth
all individuals: 77
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4131
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 92
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3260
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31446
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8181
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.397527932207049e-5
allele num: 37054
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

FS
type: SiteQuality
SIO_000300: 3.462e0

DP
type: SiteQuality
SIO_000300: 1.00613e6

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

GenotypeDepth
all individuals: 77
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 956
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 755
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31863
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2649
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4736
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.69434090138936e-4
allele num: 5902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2272
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

FS
type: SiteQuality
SIO_000300: 2.974e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.373e0

DP
type: SiteQuality
SIO_000300: 9.61273e5

QD
type: SiteQuality
SIO_000300: 1.351e1

MQ
type: SiteQuality
SIO_000300: 5.636e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeDepth
all individuals: 107
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2162
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6390
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 8.288437629506838e-4
allele num: 4826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32040
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.146e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.32888e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeDepth
all individuals: 957
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 77
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6443
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2497
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3279
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5426
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 565
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31513
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5568
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 6.291946308724832e-4
allele num: 4768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1980
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.260389268805891e-4
allele num: 11406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 4.373359990003748e-4
allele num: 32012
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.312673450508788e-4
allele num: 4324
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

DP
type: SiteQuality
SIO_000300: 9.30842e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

FS
type: SiteQuality
SIO_000300: 1.286e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

QD
type: SiteQuality
SIO_000300: 1.32e1

GenotypeDepth
all individuals: 954
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 756
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8994
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4329
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28625
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3261
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5122
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.701242571582928e-4
allele num: 3702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28366
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.61e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.741e0

DP
type: SiteQuality
SIO_000300: 8.89073e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 4.102e0

GenotypeDepth
all individuals: 458
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10193
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26716
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.274717121127805e-5
allele num: 10782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

VQSLOD
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BaseQRankSum
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SIO_000300: -4.32e-1

InbreedingCoeff
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SIO_000300: -2.17e-2

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.63e-1

DP
type: SiteQuality
SIO_000300: 8.71403e5

MQ
type: SiteQuality
SIO_000300: 5.775e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2544
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 2630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 21876
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 9.009009009009009e-4
allele num: 1110
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
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ClippingRankSum
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SIO_000300: -7.42e-1

VQSLOD
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SIO_000300: 3.49e0

ReadPosRankSum
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SIO_000300: 7.42e-1

DP
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SIO_000300: 8.11612e5

InbreedingCoeff
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SIO_000300: -3.05e-2

MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 613
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2090
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 19552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 954
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.748e1

VQSLOD
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SIO_000300: -6.808999999999999e-1

ReadPosRankSum
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SIO_000300: 7.36e-1

BaseQRankSum
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SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 7.82654e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.49e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 12
bin: 5.75e1
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GenotypeQuality
all individuals: 375
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1942
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18990
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.09e-1

DP
type: SiteQuality
SIO_000300: 7.76226e5

MQ
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SIO_000300: 5.705e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -1.067e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.615e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.57e-2

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1954
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1990
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.55e-2

FS
type: SiteQuality
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MQ
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SIO_000300: 5.604e1

QD
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SIO_000300: 1.424e1

ReadPosRankSum
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SIO_000300: 7.36e-1

BaseQRankSum
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SIO_000300: 7.36e-1

MQRankSum
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VQSLOD
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SIO_000300: -5.847e-1

ClippingRankSum
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SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 7.75383e5

GenotypeDepth
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variant carriers: 20

GenotypeDepth
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variant carriers: 11

GenotypeDepth
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variant carriers: 20

GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 68

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 890

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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bin: 9.25e1
variant carriers: 65

European (Non-Finnish)
type: Population
allele count: 572
allele frequency: 3.091223519239084e-2
allele num: 18504
num of homozygotes: 11

Other
type: Population
allele count: 6
allele frequency: 1.863354037267081e-2
allele num: 322
num of homozygotes: 0

African
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allele count: 17
allele frequency: 4.341164453524004e-3
allele num: 3916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 2.655889145496536e-2
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 1.63674762407603e-2
allele num: 1894
num of homozygotes: 0

South Asian
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allele count: 153
allele frequency: 1.567301782421635e-2
allele num: 9762
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
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FS
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MQRankSum
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VQSLOD
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SIO_000300: 5.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-2

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 3.12e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 5.279831045406547e-4
allele num: 1894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
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South Asian
type: Population
allele count: 17
allele frequency: 1.741446424912928e-3
allele num: 9762
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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BaseQRankSum
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QD
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.818689631095077e-5
allele num: 17186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3794
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.602e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.82e-2

MQ
type: SiteQuality
SIO_000300: 5.618e1

DP
type: SiteQuality
SIO_000300: 7.53268e5

VQSLOD
type: SiteQuality
SIO_000300: -3.755e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeDepth
all individuals: 96
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1190
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5660
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20323
bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 962
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.390000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 7.40946e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.89e-2

GenotypeDepth
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 809
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 313
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16258
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4548
bin: 2.5e0
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GenotypeQuality
all individuals: 1521
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 255
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 9.25e1
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GenotypeQuality
all individuals: 14340
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 10732
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 562
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
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GenotypeQuality
all individuals: 2323
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

DP
type: SiteQuality
SIO_000300: 8.74568e5

MQ
type: SiteQuality
SIO_000300: 5.465e1

FS
type: SiteQuality
SIO_000300: 5.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

QD
type: SiteQuality
SIO_000300: 2.511e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.088e-1

GenotypeDepth
all individuals: 271
bin: 5.25e1
variant carriers: 190

GenotypeDepth
all individuals: 361
bin: 4.75e1
variant carriers: 141

GenotypeDepth
all individuals: 1214
bin: 2.25e1
variant carriers: 122

GenotypeQuality
all individuals: 2323
bin: 1.75e1
variant carriers: 657

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 111

GenotypeQuality
all individuals: 1521
bin: 1.25e1
variant carriers: 321

GenotypeQuality
all individuals: 10732
bin: 2.25e1
variant carriers: 613

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 61

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 47

GenotypeQuality
all individuals: 967
bin: 6.75e1
variant carriers: 79

GenotypeQuality
all individuals: 562
bin: 3.25e1
variant carriers: 378

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 55

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 74

GenotypeQuality
all individuals: 4548
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 393
bin: 8.25e1
variant carriers: 93

GenotypeQuality
all individuals: 502
bin: 7.75e1
variant carriers: 70

GenotypeQuality
all individuals: 16258
bin: 7.5e0
variant carriers: 278

GenotypeQuality
all individuals: 2986
bin: 6.25e1
variant carriers: 66

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 97

GenotypeQuality
all individuals: 255
bin: 3.75e1
variant carriers: 178

GenotypeQuality
all individuals: 636
bin: 2.75e1
variant carriers: 310

GenotypeQuality
all individuals: 14340
bin: 9.75e1
variant carriers: 13611

GenotypeQuality
all individuals: 405
bin: 9.25e1
variant carriers: 154

African
type: Population
allele count: 547
allele frequency: 1.492903930131004e-1
allele num: 3664
num of homozygotes: 33

East Asian
type: Population
allele count: 32
allele frequency: 2.194787379972565e-2
allele num: 1458
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 5156
allele frequency: 3.090385998561496e-1
allele num: 16684
num of homozygotes: 646

Other
type: Population
allele count: 71
allele frequency: 2.350993377483444e-1
allele num: 302
num of homozygotes: 8

South Asian
type: Population
allele count: 3285
allele frequency: 3.397104446742503e-1
allele num: 9670
num of homozygotes: 533

Latino
type: Population
allele count: 269
allele frequency: 1.862880886426593e-1
allele num: 1444
num of homozygotes: 15

European (Finnish)
type: Population
allele count: 330
allele frequency: 4.435483870967742e-1
allele num: 744
num of homozygotes: 49

QD
type: SiteQuality
SIO_000300: 2.511e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.088e-1

MQ
type: SiteQuality
SIO_000300: 5.465e1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

DP
type: SiteQuality
SIO_000300: 8.74568e5

FS
type: SiteQuality
SIO_000300: 5.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeDepth
all individuals: 300
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 834
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1463
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4757
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5374
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21568
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3807
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13133
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.033071293033342e-4
allele num: 14756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.96e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 8.32534e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

FS
type: SiteQuality
SIO_000300: 3.293e0

GenotypeDepth
all individuals: 193
bin: 9.25e1
variant carriers: 192

GenotypeDepth
all individuals: 1574
bin: 9.75e1
variant carriers: 1569

GenotypeDepth
all individuals: 259
bin: 7.75e1
variant carriers: 257

GenotypeQuality
all individuals: 4398
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 550
bin: 2.75e1
variant carriers: 290

GenotypeQuality
all individuals: 14283
bin: 9.75e1
variant carriers: 13555

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 68

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 52

GenotypeQuality
all individuals: 462
bin: 7.25e1
variant carriers: 63

GenotypeQuality
all individuals: 509
bin: 3.25e1
variant carriers: 369

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 61

GenotypeQuality
all individuals: 1401
bin: 1.25e1
variant carriers: 311

GenotypeQuality
all individuals: 1970
bin: 1.75e1
variant carriers: 641

GenotypeQuality
all individuals: 17922
bin: 7.5e0
variant carriers: 284

GenotypeQuality
all individuals: 523
bin: 7.75e1
variant carriers: 95

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 96

GenotypeQuality
all individuals: 400
bin: 9.25e1
variant carriers: 150

GenotypeQuality
all individuals: 9493
bin: 2.25e1
variant carriers: 606

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 109

GenotypeQuality
all individuals: 964
bin: 6.75e1
variant carriers: 83

GenotypeQuality
all individuals: 2949
bin: 6.25e1
variant carriers: 68

GenotypeQuality
all individuals: 396
bin: 8.25e1
variant carriers: 97

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 178

African
type: Population
allele count: 493
allele frequency: 1.428985507246377e-1
allele num: 3450
num of homozygotes: 30

East Asian
type: Population
allele count: 26
allele frequency: 2.044025157232704e-2
allele num: 1272
num of homozygotes: 2

Latino
type: Population
allele count: 200
allele frequency: 1.724137931034483e-1
allele num: 1160
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 237
allele frequency: 4.172535211267606e-1
allele num: 568
num of homozygotes: 36

South Asian
type: Population
allele count: 3124
allele frequency: 3.35049335049335e-1
allele num: 9324
num of homozygotes: 507

Other
type: Population
allele count: 70
allele frequency: 2.397260273972603e-1
allele num: 292
num of homozygotes: 9

European (Non-Finnish)
type: Population
allele count: 4269
allele frequency: 2.929590996431513e-1
allele num: 14572
num of homozygotes: 520

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.38658e5

FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 2.624e1

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQ
type: SiteQuality
SIO_000300: 5.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.02e-2

GenotypeDepth
all individuals: 290
bin: 7.75e1
variant carriers: 288

GenotypeDepth
all individuals: 279
bin: 8.75e1
variant carriers: 273

GenotypeDepth
all individuals: 272
bin: 5.75e1
variant carriers: 239

GenotypeQuality
all individuals: 962
bin: 6.75e1
variant carriers: 83

GenotypeQuality
all individuals: 4566
bin: 2.5e0
variant carriers: 12

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 51

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 96

GenotypeQuality
all individuals: 400
bin: 9.25e1
variant carriers: 150

GenotypeQuality
all individuals: 8463
bin: 2.25e1
variant carriers: 606

GenotypeQuality
all individuals: 1444
bin: 1.25e1
variant carriers: 311

GenotypeQuality
all individuals: 237
bin: 3.75e1
variant carriers: 178

GenotypeQuality
all individuals: 2926
bin: 6.25e1
variant carriers: 68

GenotypeQuality
all individuals: 18272
bin: 7.5e0
variant carriers: 284

GenotypeQuality
all individuals: 508
bin: 3.25e1
variant carriers: 367

GenotypeQuality
all individuals: 524
bin: 7.75e1
variant carriers: 95

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 109

GenotypeQuality
all individuals: 396
bin: 8.25e1
variant carriers: 97

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 68

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 60

GenotypeQuality
all individuals: 530
bin: 2.75e1
variant carriers: 290

GenotypeQuality
all individuals: 462
bin: 7.25e1
variant carriers: 63

GenotypeQuality
all individuals: 2284
bin: 1.75e1
variant carriers: 641

GenotypeQuality
all individuals: 14286
bin: 9.75e1
variant carriers: 13558

African
type: Population
allele count: 490
allele frequency: 1.439482961222092e-1
allele num: 3404
num of homozygotes: 30

Other
type: Population
allele count: 74
allele frequency: 2.5e-1
allele num: 296
num of homozygotes: 10

European (Non-Finnish)
type: Population
allele count: 4186
allele frequency: 2.92768219331375e-1
allele num: 14298
num of homozygotes: 509

Latino
type: Population
allele count: 187
allele frequency: 1.725092250922509e-1
allele num: 1084
num of homozygotes: 11

European (Finnish)
type: Population
allele count: 229
allele frequency: 4.178832116788321e-1
allele num: 548
num of homozygotes: 33

South Asian
type: Population
allele count: 3118
allele frequency: 3.354852593070798e-1
allele num: 9294
num of homozygotes: 506

East Asian
type: Population
allele count: 26
allele frequency: 2.155887230514096e-2
allele num: 1206
num of homozygotes: 2

QD
type: SiteQuality
SIO_000300: 2.637e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.68e-2

FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.31417e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

MQ
type: SiteQuality
SIO_000300: 5.395e1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

GenotypeDepth
all individuals: 107
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27304
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1383
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.146263182026593e-4
allele num: 8724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.26e-1

QD
type: SiteQuality
SIO_000300: 1.609e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.15e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.358e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 5.79435e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

GenotypeDepth
all individuals: 779
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
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variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27454
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4189
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 9.310986964618249e-4
allele num: 3222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8714
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.218e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

FS
type: SiteQuality
SIO_000300: 3.168e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.14e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.79002e5

VQSLOD
type: SiteQuality
SIO_000300: -1.227e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1321
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3156
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
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variant carriers: 0

GenotypeDepth
all individuals: 22
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variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12765
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27865
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4169
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1721
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 624
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 926
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.73432e5

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.178e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.604e1

VQSLOD
type: SiteQuality
SIO_000300: -2.921e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.28e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1321
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 779
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2999
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10804
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e-1

DP
type: SiteQuality
SIO_000300: 5.63402e5

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.332e1

QD
type: SiteQuality
SIO_000300: 2.625e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e0

GenotypeDepth
all individuals: 22
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 777
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4140
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29625
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1516
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 5.53472e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.563e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeDepth
all individuals: 1425
bin: 2.25e1
variant carriers: 0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
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GenotypeDepth
all individuals: 61
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3132
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2237
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30763
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.39591e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.589e0

QD
type: SiteQuality
SIO_000300: 1.941e1

VQSLOD
type: SiteQuality
SIO_000300: -2.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeDepth
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bin: 7.5e0
variant carriers: 1

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1158
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

DP
type: SiteQuality
SIO_000300: 5.02955e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.950000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.145e0

QD
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SIO_000300: 7.41e0

BaseQRankSum
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SIO_000300: -2.219e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.491620111731844e-4
allele num: 2864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

FS
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
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SIO_000300: -3.193e0

DP
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SIO_000300: 4.93804e5

QD
type: SiteQuality
SIO_000300: 1.823e1

InbreedingCoeff
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SIO_000300: -7.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.859999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.387e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2834
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.240694789081886e-4
allele num: 8060
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.82553e5

InbreedingCoeff
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SIO_000300: -7.290000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
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SIO_000300: -1.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

FS
type: SiteQuality
SIO_000300: 9.300000000000001e0

QD
type: SiteQuality
SIO_000300: 1.251e1

MQ
type: SiteQuality
SIO_000300: 5.824e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 22
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variant carriers: 0

GenotypeDepth
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 800
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 688
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variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.579098067287044e-4
allele num: 2794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8930
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.09e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 4.63153e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.55e-2

FS
type: SiteQuality
SIO_000300: 2.877e0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 543
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

DP
type: SiteQuality
SIO_000300: 4.56227e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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BaseQRankSum
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SIO_000300: -7.31e-1

MQRankSum
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SIO_000300: 7.31e-1

ClippingRankSum
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SIO_000300: -7.31e-1

ReadPosRankSum
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SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

MQ
type: SiteQuality
SIO_000300: 5.516e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 580
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2772
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.13455865668255e-4
allele num: 8814
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

MQRankSum
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SIO_000300: 5.21e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
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InbreedingCoeff
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SIO_000300: -7.74e-2

BaseQRankSum
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SIO_000300: -7.52e-1

ClippingRankSum
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SIO_000300: -1.331e0

ReadPosRankSum
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SIO_000300: 6.37e-1

MQ
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SIO_000300: 5.685e1

QD
type: SiteQuality
SIO_000300: 6.42e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 412
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 192
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
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FS
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QD
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DP
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MQRankSum
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MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 7.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
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SIO_000300: 7.27e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 667
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.262945188178833e-4
allele num: 7918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.27802037845706e-4
allele num: 2748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.729999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 1.262e0

VQSLOD
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SIO_000300: -4.842e-1

DP
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SIO_000300: 4.17766e5

BaseQRankSum
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SIO_000300: -3.36e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2754
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-2

DP
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SIO_000300: 3.9861e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.589e1

VQSLOD
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SIO_000300: 3.04e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

African
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allele count: 1
allele frequency: 3.623188405797101e-4
allele num: 2760
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.515e1

BaseQRankSum
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SIO_000300: 1.77e0

ClippingRankSum
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SIO_000300: -1.821e0

FS
type: SiteQuality
SIO_000300: 6.286e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

VQSLOD
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SIO_000300: -1.9e0

MQRankSum
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SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 3.92089e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.18e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 636
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.264862130027827e-4
allele num: 7906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 3.022e0

ClippingRankSum
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SIO_000300: -1.418e0

MQ
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VQSLOD
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SIO_000300: -2.059e0

QD
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SIO_000300: 1.237e1

ReadPosRankSum
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SIO_000300: 1.63e0

BaseQRankSum
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SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 3.89548e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.909999999999999e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 2
allele frequency: 2.529724260055654e-4
allele num: 7906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 6.1e-2

BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele count: 0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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African
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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South Asian
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allele num: 7906
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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QD
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Latino
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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Other
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East Asian
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allele frequency: 1.577287066246057e-3
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

InbreedingCoeff
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BaseQRankSum
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QD
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FS
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SIO_000300: 6.837e0

VQSLOD
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MQRankSum
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SIO_000300: -7.9e-2

MQ
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DP
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ReadPosRankSum
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SIO_000300: 7.35e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 8652
num of homozygotes: 0

Other
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ReadPosRankSum
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SIO_000300: -6.7e-1

QD
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InbreedingCoeff
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SIO_000300: -5.63e-2

MQ
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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DP
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FS
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SIO_000300: 0.0e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

African
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allele frequency: 7.936507936507936e-3
allele num: 2772
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

InbreedingCoeff
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SIO_000300: -5.11e-2

MQ
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QD
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MQRankSum
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DP
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BaseQRankSum
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SIO_000300: 1.74e0

FS
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SIO_000300: 1.745e0

ClippingRankSum
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SIO_000300: -4.13e-1

VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 3.610108303249097e-4
allele num: 2770
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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South Asian
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allele num: 7914
num of homozygotes: 0

African
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num of homozygotes: 0

Other
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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MQRankSum
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FS
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 8652
num of homozygotes: 0

East Asian
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South Asian
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African
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Other
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Latino
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European (Finnish)
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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Other
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East Asian
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South Asian
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DP
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MQ
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele num: 2772
num of homozygotes: 1

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.498e1

DP
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InbreedingCoeff
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SIO_000300: 3.77e-2

ReadPosRankSum
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SIO_000300: -3.3e-1

FS
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SIO_000300: 4.924e0

ClippingRankSum
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BaseQRankSum
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SIO_000300: -1.646e0

MQ
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SIO_000300: 5.962e1

VQSLOD
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SIO_000300: 6.8e-1

MQRankSum
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SIO_000300: 9.2e-2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 3.607503607503608e-4
allele num: 2772
num of homozygotes: 0

South Asian
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num of homozygotes: 0

BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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FS
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SIO_000300: 1.202e0

DP
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SIO_000300: 3.72949e5

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

QD
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MQ
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FS
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.28e0

InbreedingCoeff
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SIO_000300: -4.23e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.263583522870862e-4
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 7.942238267148015e-3
allele num: 2770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ClippingRankSum
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FS
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SIO_000300: 1.818e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
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SIO_000300: 2.16e-1

BaseQRankSum
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SIO_000300: -7.0e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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DP
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 8614
num of homozygotes: 0

European (Finnish)
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allele num: 466
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South Asian
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allele num: 7914
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Other
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Latino
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African
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num of homozygotes: 0

MQ
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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South Asian
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MQRankSum
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DP
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ClippingRankSum
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.185395922238028e-4
allele num: 8436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.334e0

QD
type: SiteQuality
SIO_000300: 1.266e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

FS
type: SiteQuality
SIO_000300: 1.0874e1

DP
type: SiteQuality
SIO_000300: 3.56293e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.981e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

MQ
type: SiteQuality
SIO_000300: 5.903e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.296e0

GenotypeDepth
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bin: 8.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 22

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1990
bin: 9.75e1
variant carriers: 24

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 3.034901365705615e-3
allele num: 7908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.54166e5

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
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SIO_000300: -1.509e0

VQSLOD
type: SiteQuality
SIO_000300: 4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

QD
type: SiteQuality
SIO_000300: 1.364e1

GenotypeDepth
all individuals: 81
bin: 6.25e1
variant carriers: 31

GenotypeDepth
all individuals: 12
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variant carriers: 12

GenotypeDepth
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variant carriers: 308

GenotypeQuality
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bin: 5.25e1
variant carriers: 7

GenotypeQuality
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variant carriers: 15

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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variant carriers: 955

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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bin: 1.75e1
variant carriers: 18

GenotypeQuality
all individuals: 48
bin: 4.75e1
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GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 12

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1115
bin: 6.75e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 701
allele frequency: 8.399233165588306e-2
allele num: 8346
num of homozygotes: 31

African
type: Population
allele count: 29
allele frequency: 1.078066914498141e-2
allele num: 2690
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 2.551020408163265e-2
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 28
allele frequency: 7.142857142857142e-2
allele num: 392
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 80
allele frequency: 2.209944751381215e-1
allele num: 362
num of homozygotes: 5

South Asian
type: Population
allele count: 128
allele frequency: 1.619023526435618e-2
allele num: 7906
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.7914e5

VQSLOD
type: SiteQuality
SIO_000300: 5.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.274e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 1.536e1

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 629
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3859
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GenotypeQuality
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GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 1608
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1199
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 1.494768310911809e-3
allele num: 2676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.154639175257732e-3
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.31e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.07e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.567e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

FS
type: SiteQuality
SIO_000300: 1.201e0

DP
type: SiteQuality
SIO_000300: 3.30501e5

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeDepth
all individuals: 10
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2715
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variant carriers: 0

GenotypeDepth
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 508
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variant carriers: 0

GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 374
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GenotypeQuality
all individuals: 3798
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GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 163
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GenotypeQuality
all individuals: 1231
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GenotypeQuality
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GenotypeQuality
all individuals: 44
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29
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GenotypeQuality
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GenotypeQuality
all individuals: 522
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GenotypeQuality
all individuals: 3953
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 284
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GenotypeQuality
all individuals: 1603
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.249375312343828e-4
allele num: 8004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.78e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.755e-1

ClippingRankSum
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MQRankSum
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SIO_000300: -9.3e-2

FS
type: SiteQuality
SIO_000300: 8.173e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.631e1

DP
type: SiteQuality
SIO_000300: 3.23257e5

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 314
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GenotypeQuality
all individuals: 978
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.952569169960474e-3
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7212
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.215e-1

FS
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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MQ
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DP
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SIO_000300: 2.96747e5

MQRankSum
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SIO_000300: 1.97e0

ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -1.67e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 2
allele frequency: 2.544529262086514e-4
allele num: 7860
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 88
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VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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MQ
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FS
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QD
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InbreedingCoeff
type: SiteQuality
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DP
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3640
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1793
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GenotypeQuality
all individuals: 408
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GenotypeQuality
all individuals: 462
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.272912423625254e-4
allele num: 7856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2400
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.95e-2

DP
type: SiteQuality
SIO_000300: 2.93528e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.009e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.177e-1

FS
type: SiteQuality
SIO_000300: 5.283e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.016e1

GenotypeDepth
all individuals: 56
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 690
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 472
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4043
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 9.107468123861567e-3
allele num: 2196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7846
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.79946e5

FS
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

GenotypeDepth
all individuals: 56
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1817
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1599
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 6.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1790
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.097560975609756e-3
allele num: 164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 6.4056e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.811e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 2.73187e5

VQSLOD
type: SiteQuality
SIO_000300: -1.9e1

QD
type: SiteQuality
SIO_000300: 2.67e0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1407
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 417
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3217
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 511
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 874
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 438
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1530
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 5.279034690799397e-3
allele num: 1326
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.910828025477707e-2
allele num: 314
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.242463958060288e-4
allele num: 7630
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.150537634408602e-2
allele num: 186
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.84931506849315e-3
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.414398595258999e-3
allele num: 4556
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.44102e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.619999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.781e0

DP
type: SiteQuality
SIO_000300: 2.72327e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.231e1

GenotypeDepth
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6772
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.644736842105263e-4
allele num: 6080
num of homozygotes: 0