17-61869930-T-TCATA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61869930
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61869934
    reference: chr 17
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: TCATA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.372+10_372+11insTACA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.372+10_372+11insTACA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.372+10_372+11insTACA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.372+10_372+11insTACA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.34+10_34+11insTACA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.372+10_372+11insTACA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.386+10_386+11insTACA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.77+10_77+11insTACA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.15+10_15+11insTACA
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

17-61869934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61869934
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61869934
    reference: chr 17
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.34+12C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.372+12C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.372+12C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.372+12C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.77+12C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.372+12C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.15+12C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.372+12C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.386+12C>T
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

17-61869935-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61869935
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61869935
    reference: chr 17
allele count: 1
allele frequency: 8.276090374906894e-6
allele num: 120830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.77+13A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.372+13A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.34+13A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.372+13A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.15+13A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.372+13A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.386+13A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.372+13A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.372+13A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-61869954-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61869954
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61869954
    reference: chr 17
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.34+32A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.372+32A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.77+32A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.372+32A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.372+32A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.372+32A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.386+32A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.372+32A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.15+32A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23822
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4127
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

17-61869964-AAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61869964
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61869962
    reference: chr 17
allele count: 1
allele frequency: 8.314348903337379e-6
allele num: 120274
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.372+44_372+45delTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.386+44_386+45delTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.77+44_77+45delTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.372+44_372+45delTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.372+44_372+45delTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.34+44_34+45delTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.372+44_372+45delTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.15+44_15+45delTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.372+44_372+45delTA
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: AAT
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-61869971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61869971
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61869971
    reference: chr 17
allele count: 1
allele frequency: 8.342231713828083e-6
allele num: 119872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.77+49C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.372+49C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.372+49C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.372+49C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.372+49C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.372+49C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.386+49C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.15+49C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.34+49C>T
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8044
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/17-61869972-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61869972
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61869972
    reference: chr 17
allele count: 1
allele frequency: 8.337363058811759e-6
allele num: 119942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.372+50A>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.372+50A>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.372+50A>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.77+50A>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.372+50A>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.372+50A>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.386+50A>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.34+50A>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.15+50A>C
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23810
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

17-61869972-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61869972
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61869972
    reference: chr 17
allele count: 15
allele frequency: 1.250604458821764e-4
allele num: 119942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.372+50A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.372+50A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.77+50A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.372+50A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.372+50A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.386+50A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.34+50A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.15+50A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.372+50A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7745
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7877
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

17-61875352-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875352
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875352
    reference: chr 17
allele count: 6
allele frequency: 4.973062577704103e-5
allele num: 120650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.373-46A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.373-46A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.373-46A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.373-46A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.387-46A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.16-46A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.35-46A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.78-46A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.373-46A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5519
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

17-61875371-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875371
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875371
    reference: chr 17
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.373-27A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.373-27A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.35-27A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.78-27A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.373-27A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.387-27A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.16-27A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.373-27A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.373-27A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

17-61875376-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875376
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875376
    reference: chr 17
allele count: 4
allele frequency: 3.3028916816673e-5
allele num: 121106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.16-22A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.35-22A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.387-22A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.373-22A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.78-22A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.373-22A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.373-22A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.373-22A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.373-22A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8936
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

17-61875393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875393
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875393
    reference: chr 17
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.78-5A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.373-5A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.373-5A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.373-5A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.35-5A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.373-5A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.373-5A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.16-5A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.387-5A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 7.75e1
  variant carriers: 0
hgvs: c.373-5A>G
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

17-61875398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875398
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875398
    reference: chr 17
allele count: 5
allele frequency: 4.120652711389484e-5
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.16G>A
  hgvsp: ENSP00000352308.5:p.Asp6Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.373G>A
  hgvsp: ENSP00000463561.1:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.373G>A
  hgvsp: ENSP00000390121.2:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.387G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.78G>A
  hgvsp: ENSP00000462174.1:p.Asp27Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.373G>A
  hgvsp: ENSP00000463038.1:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.373G>A
  hgvsp: ENSP00000374574.2:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.35G>A
  hgvsp: ENSP00000461957.1:p.Asp13Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.373G>A
  hgvsp: ENSP00000464050.1:p.Asp125Asn
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp125Asn
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

17-61875462-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875462
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875462
    reference: chr 17
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+3A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+3A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+3A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.451A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+3A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+3A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+3A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+3A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+3A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.434+3A>G
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-61875463-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875463
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875463
    reference: chr 17
allele count: 5
allele frequency: 4.1209244057627e-5
allele num: 121332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+4A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+4A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+4A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+4A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+4A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+4A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+4A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+4A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.452A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: c.434+4A>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

17-61875471-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875471
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875471
    reference: chr 17
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+12T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+12T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+12T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+12T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+12T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+12T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.460T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+12T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+12T>A
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

17-61875479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875479
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875479
    reference: chr 17
allele count: 12
allele frequency: 9.895927825699725e-5
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+20C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+20C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+20C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.468C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+20C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+20C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+20C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+20C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+20C>T
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8292
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/17-61875483-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875483
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875483
    reference: chr 17
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+24C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+24C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+24C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.472C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+24C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+24C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+24C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+24C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+24C>A
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7116
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8947
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

17-61875492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875492
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875492
    reference: chr 17
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.481C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+33C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+33C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+33C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+33C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+33C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+33C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+33C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+33C>T
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7581
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

17-61875493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875493
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875493
    reference: chr 17
allele count: 5
allele frequency: 4.124799947202561e-5
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.482G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+34G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+34G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+34G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+34G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+34G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+34G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+34G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+34G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/17-61875498-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875498
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875496
    reference: chr 17
allele count: 5
allele frequency: 4.124936063491016e-5
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.488_489delAC
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+40_434+41delAC
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+40_77+41delAC
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+40_96+41delAC
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+40_434+41delAC
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+40_434+41delAC
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+40_434+41delAC
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+40_139+41delAC
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+40_434+41delAC
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: AAC
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

17-61875500-C-CGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875500
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875503
    reference: chr 17
allele count: 5
allele frequency: 4.127183279955096e-5
allele num: 121148
alternate allele: CGGT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+41_139+42insGGT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+41_434+42insGGT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+41_434+42insGGT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+41_96+42insGGT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+41_434+42insGGT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+41_434+42insGGT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.489_490insGGT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+41_77+42insGGT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+41_434+42insGGT
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8035
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

17-61875502-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875502
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875502
    reference: chr 17
allele count: 6
allele frequency: 4.952292911618079e-5
allele num: 121156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+43G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+43G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+43G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+43G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+43G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.491G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+43G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+43G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+43G>C
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33413
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

17-61875503-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875503
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875503
    reference: chr 17
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+44C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+44C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.492C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+44C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+44C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+44C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+44C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+44C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+44C>G
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33414
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

17-61875503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875503
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875503
    reference: chr 17
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.492C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+44C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+44C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+44C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+44C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+44C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+44C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+44C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+44C>T
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-61875504-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875504
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875504
    reference: chr 17
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+45T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+45T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+45T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+45T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.493T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+45T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+45T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+45T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+45T>C
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

17-61875510-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61875510
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61875510
    reference: chr 17
allele count: 2
allele frequency: 1.65128222064433e-5
allele num: 121118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.96+51A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.434+51A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.434+51A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.77+51A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.139+51A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.434+51A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000198231
  ensembl transcript: ENST00000580108
  gene symbol: DDX42
  hgvsc: ENST00000580108.1:n.499A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.434+51A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.434+51A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

17-61876790-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876790
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876790
    reference: chr 17
allele count: 1
allele frequency: 1.379158161858002e-5
allele num: 72508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-159A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-159A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-159A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-159A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-159A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-50A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-1038A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-159A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5822
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5208
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS

17-61876790-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876790
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876790
    reference: chr 17
allele count: 3
allele frequency: 4.137474485574006e-5
allele num: 72508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-1038A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-159A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-159A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-159A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-159A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-159A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-159A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-50A>T
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17168
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15724
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

17-61876795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876795
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876795
    reference: chr 17
allele count: 1
allele frequency: 1.374494873134123e-5
allele num: 72754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-154G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-45G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-154G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-154G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-1033G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-154G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-154G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-154G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5317
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

17-61876805-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876805
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876805
    reference: chr 17
allele count: 1
allele frequency: 1.328091797705057e-5
allele num: 75296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-144T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-144T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-144T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-35T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-144T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-144T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-1023T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-144T>C
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15742
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8920
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5079
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

17-61876811-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876811
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876811
    reference: chr 17
allele count: 3
allele frequency: 3.884903265908679e-5
allele num: 77222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-138T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-138T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-29T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-138T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-1017T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-138T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-138T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-138T>C
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16000
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12746
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5823
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4597
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15150
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

17-61876812-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876812
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876812
    reference: chr 17
allele count: 2
allele frequency: 2.576124478334793e-5
allele num: 77636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-137G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-137G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-1016G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-137G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-137G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-137G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-137G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-28G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15934
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15181
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

17-61876815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876815
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876815
    reference: chr 17
allele count: 3
allele frequency: 3.77453447408153e-5
allele num: 79480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-134C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-134C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-134C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-134C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-1013C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-25C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-134C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-134C>T
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10519
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15469
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4303
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/17-61876817-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876817
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876816
    reference: chr 17
allele count: 1
allele frequency: 1.232194785351668e-5
allele num: 81156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-131delA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-131delA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-131delA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-1010delA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-131delA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-131delA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-22delA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-131delA
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20647
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: CA
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/17-61876822-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876822
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876822
    reference: chr 17
allele count: 3
allele frequency: 3.472382980693551e-5
allele num: 86396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-127C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-127C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-127C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-127C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-127C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-1006C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-18C>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-127C>A
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

17-61876829-GTTA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876829
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876826
    reference: chr 17
allele count: 18
allele frequency: 1.911680367042631e-4
allele num: 94158
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-113_435-111delTTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-113_435-111delTTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-113_78-111delTTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-113_97-111delTTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-992_140-990delTTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-4_435-2delTTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-113_435-111delTTA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-113_435-111delTTA
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31487
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
hgvs: c.435-4_435-2delTTA
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: GTTA
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

17-61876832-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876832
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876832
    reference: chr 17
allele count: 4
allele frequency: 4.128733923742285e-5
allele num: 96882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-117A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-117A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-117A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-117A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-117A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-996A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-8A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-117A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33195
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30569
  bin: 6.25e1
  variant carriers: 0
hgvs: c.435-8A>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

17-61876835-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876835
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876835
    reference: chr 17
allele count: 4
allele frequency: 4.028521935301938e-5
allele num: 99292
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-114A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-114A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-114A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-5A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-114A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-114A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-114A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-993A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34530
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
hgvs: c.435-5A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

17-61876836-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876836
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876836
    reference: chr 17
allele count: 1
allele frequency: 9.999400035997841e-6
allele num: 100006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-113T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-113T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-113T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-113T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-113T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-4T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-113T>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-992T>A
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32381
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4470
  bin: 9.75e1
  variant carriers: 1
hgvs: c.435-4T>A
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

17-61876836-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876836
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876836
    reference: chr 17
allele count: 1
allele frequency: 9.999400035997841e-6
allele num: 100006
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-992T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-113T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-113T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-113T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-4T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-113T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-113T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-113T>C
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
hgvs: c.435-4T>C
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

17-61876839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876839
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876839
    reference: chr 17
allele count: 2
allele frequency: 1.961668987974969e-5
allele num: 101954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-110G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-110G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-989G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.435-1G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-110G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-110G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-110G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-110G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 8.25e1
  variant carriers: 0
hgvs: c.435-1G>A
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

17-61876846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876846
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876846
    reference: chr 17
allele count: 1
allele frequency: 9.396023602811291e-6
allele num: 106428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-103G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-982G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-103G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-103G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.441G>A
  hgvsp: ENST00000578137.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-103G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-103G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-103G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2157
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu147Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

17-61876848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876848
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876848
    reference: chr 17
allele count: 1
allele frequency: 9.304575990472114e-6
allele num: 107474
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-101G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-980G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.443G>A
  hgvsp: ENSP00000463038.1:p.Ser148Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-101G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-101G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-101G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-101G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-101G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4556
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser148Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

17-61876851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876851
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876851
    reference: chr 17
allele count: 1
allele frequency: 9.207255317189945e-6
allele num: 108610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-98C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-98C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-977C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-98C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-98C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.446C>T
  hgvsp: ENSP00000463038.1:p.Ser149Phe
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-98C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-98C>T
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4391
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser149Phe
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

17-61876859-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876859
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876859
    reference: chr 17
allele count: 1
allele frequency: 9.034239768723461e-6
allele num: 110690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-90G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-969G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-90G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-90G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.454G>A
  hgvsp: ENSP00000463038.1:p.Val152Met
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-90G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-90G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-90G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val152Met
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

17-61876859-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876859
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876858
    reference: chr 17
allele count: 1
allele frequency: 9.034239768723461e-6
allele num: 110690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-89delT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-89delT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-89delT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-968delT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-89delT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-89delT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.455delT
  hgvsp: ENSP00000463038.1:p.Val152GlyfsTer6
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-89delT
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3971
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val152GlyfsTer6
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: GT
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum

17-61876869-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876869
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876869
    reference: chr 17
allele count: 1
allele frequency: 8.959288990825689e-6
allele num: 111616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.464C>G
  hgvsp: ENSP00000463038.1:p.Ser155Ter
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-80C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-80C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-80C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-959C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-80C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-80C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-80C>G
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5629
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser155Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-61876871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876871
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876871
    reference: chr 17
allele count: 3
allele frequency: 2.681396471282244e-5
allele num: 111882
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-957A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-78A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-78A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-78A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-78A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.466A>G
  hgvsp: ENSP00000463038.1:p.Thr156Ala
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-78A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-78A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr156Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

17-61876873-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876873
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876873
    reference: chr 17
allele count: 1
allele frequency: 8.916152501872391e-6
allele num: 112156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-76A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-76A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-76A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.468A>T
  hgvsp: ENST00000578137.1:c.468A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-955A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-76A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-76A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-76A>T
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5663
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr156Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

17-61876884-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876884
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876884
    reference: chr 17
allele count: 2
allele frequency: 1.766441151013054e-5
allele num: 113222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-65G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-65G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-65G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-65G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+1G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-65G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-65G>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-944G>C
  variant of: http://identifiers.org/hgnc/18676
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 7.75e1
  variant carriers: 0
hgvs: c.478+1G>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

17-61876896-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876896
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876896
    reference: chr 17
allele count: 9
allele frequency: 7.862184639038367e-5
allele num: 114472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-932C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-53C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-53C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-53C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-53C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-53C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+13C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-53C>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7592
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

17-61876900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876900
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876900
    reference: chr 17
allele count: 2
allele frequency: 1.735207357279195e-5
allele num: 115260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-49G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-49G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-49G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+17G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-49G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-49G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-928G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-49G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

17-61876911-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876911
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876911
    reference: chr 17
allele count: 1
allele frequency: 8.537522410996328e-6
allele num: 117130
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-38A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-38A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-917A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-38A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+28A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-38A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-38A>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-38A>T
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40183
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

17-61876912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876912
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876912
    reference: chr 17
allele count: 1
allele frequency: 8.526457597926366e-6
allele num: 117282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-37T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-37T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+29T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-37T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-37T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-37T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-37T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-916T>C
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5762
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

17-61876914-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876914
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876914
    reference: chr 17
allele count: 15
allele frequency: 1.274578114644053e-4
allele num: 117686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+31T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-914T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-35T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-35T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-35T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-35T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-35T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-35T>C
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40503
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

17-61876920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876920
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876920
    reference: chr 17
allele count: 1
allele frequency: 8.415524960447032e-6
allele num: 118828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-29G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+37G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-908G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-29G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-29G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-29G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-29G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-29G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41069
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39554
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

17-61876934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876934
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876934
    reference: chr 17
allele count: 2
allele frequency: 1.660329741486659e-5
allele num: 120458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.78-15C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.435-15C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.435-15C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.435-15C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+51C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.97-15C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-894C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.435-15C>T
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

17-61876955-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876955
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876955
    reference: chr 17
allele count: 1
allele frequency: 8.260912665631299e-6
allele num: 121052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.441T>C
  hgvsp: ENST00000389924.2:c.441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.441T>C
  hgvsp: ENST00000578681.1:c.441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-873T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.103T>C
  hgvsp: ENST00000577940.2:c.103T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.441T>C
  hgvsp: ENST00000583590.1:c.441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.84T>C
  hgvsp: ENST00000359353.5:c.84T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.441T>C
  hgvsp: ENST00000457800.2:c.441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+72T>C
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile147Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

17-61876959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876959
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876959
    reference: chr 17
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.445G>A
  hgvsp: ENSP00000390121.2:p.Asp149Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.445G>A
  hgvsp: ENSP00000374574.2:p.Asp149Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.107G>A
  hgvsp: ENSP00000461957.1:p.Asp37Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.445G>A
  hgvsp: ENSP00000464050.1:p.Asp149Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.88G>A
  hgvsp: ENSP00000352308.5:p.Asp30Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-869G>A
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.445G>A
  hgvsp: ENSP00000463561.1:p.Asp149Asn
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+76G>A
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp149Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

17-61876994-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876994
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876994
    reference: chr 17
allele count: 1
allele frequency: 8.277323444690924e-6
allele num: 120812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.471+9C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-834C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.471+9C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+111C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.471+9C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.471+9C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.114+9C>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.133+9C>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5877
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

17-61876995-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61876995
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61876995
    reference: chr 17
allele count: 1
allele frequency: 8.281299170213822e-6
allele num: 120754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-833T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+112T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.471+10T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.471+10T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.471+10T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.114+10T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.471+10T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.133+10T>C
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

17-61877002-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61877002
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61877003
    reference: chr 17
allele count: 1
allele frequency: 8.29476268683953e-6
allele num: 120558
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.133+18dupA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.471+18dupA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.471+18dupA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.471+18dupA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+120dupA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.114+18dupA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.471+18dupA
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-825dupA
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4753
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39539
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

17-61877005-TTCTA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61877005
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61877001
    reference: chr 17
allele count: 2
allele frequency: 1.659861235600704e-5
allele num: 120492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.133+24_133+27delATCT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.114+24_114+27delATCT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.471+24_471+27delATCT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.471+24_471+27delATCT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.471+24_471+27delATCT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-819_140-816delATCT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.471+24_471+27delATCT
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+126_478+129delATCT
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39186
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: TTCTA
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

17-61877009-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61877009
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61877009
    reference: chr 17
allele count: 3
allele frequency: 2.4906600249066e-5
allele num: 120450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.133+24A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.471+24A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+126A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.471+24A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-819A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.471+24A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.471+24A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.114+24A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

17-61877011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61877011
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61877011
    reference: chr 17
allele count: 1
allele frequency: 8.30813199960121e-6
allele num: 120364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-817C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+128C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.114+26C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.133+26C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.471+26C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.471+26C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.471+26C>T
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.471+26C>T
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

17-61877019-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61877019
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61877019
    reference: chr 17
allele count: 6
allele frequency: 4.993425323324289e-5
allele num: 120158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.471+34T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.471+34T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.133+34T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.114+34T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-809T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.471+34T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.471+34T>C
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+136T>C
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

17-61877024-C-CCACAAAGTCTA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61877024
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61877035
    reference: chr 17
allele count: 1
allele frequency: 8.340700952508049e-6
allele num: 119894
alternate allele: CCACAAAGTCTA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4765
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

17-61877026-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61877026
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61877026
    reference: chr 17
allele count: 2
allele frequency: 1.668641225450116e-5
allele num: 119858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.114+41A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-802A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.133+41A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.471+41A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.471+41A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.471+41A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+143A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.471+41A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36694
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

17-61877029-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61877029
    reference: chr 17
  end: Position
    type: ExactPosition
    position: 61877029
    reference: chr 17
allele count: 2
allele frequency: 1.670927531872943e-5
allele num: 119694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463038
  ensembl transcript: ENST00000578137
  gene symbol: DDX42
  hgvsc: ENST00000578137.1:c.478+146A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000374574
  ensembl transcript: ENST00000389924
  gene symbol: DDX42
  hgvsc: ENST00000389924.2:c.471+44A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000462174
  ensembl transcript: ENST00000584261
  gene symbol: DDX42
  hgvsc: ENST00000584261.1:c.140-799A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000461957
  ensembl transcript: ENST00000577940
  gene symbol: DDX42
  hgvsc: ENST00000577940.2:c.133+44A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000464050
  ensembl transcript: ENST00000578681
  gene symbol: DDX42
  hgvsc: ENST00000578681.1:c.471+44A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000390121
  ensembl transcript: ENST00000457800
  gene symbol: DDX42
  hgvsc: ENST00000457800.2:c.471+44A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000463561
  ensembl transcript: ENST00000583590
  gene symbol: DDX42
  hgvsc: ENST00000583590.1:c.471+44A>G
  variant of: http://identifiers.org/hgnc/18676
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000198231
  ensembl protein: ENSP00000352308
  ensembl transcript: ENST00000359353
  gene symbol: DDX42
  hgvsc: ENST00000359353.5:c.114+44A>G
  variant of: http://identifiers.org/hgnc/18676
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

17-61877031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 61877031
allele count: 1
allele frequency: 8.368200836820084e-6
allele num: 119500
alternate allele: A
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3691
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23826
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2277
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5159
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.703085581214826e-5
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.287e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.03e-1

DP
type: SiteQuality
SIO_000300: 2.447087e6

MQRankSum
type: SiteQuality
SIO_000300: -2.83e0

QD
type: SiteQuality
SIO_000300: 1.397e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5144
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4155
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23826
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504800312998465e-5
allele num: 66454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.0e0

QD
type: SiteQuality
SIO_000300: 2.024e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

DP
type: SiteQuality
SIO_000300: 2.445996e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.767e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.22e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
all individuals: 2180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23824
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3690
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

DP
type: SiteQuality
SIO_000300: 2.443931e6

FS
type: SiteQuality
SIO_000300: 5.046e0

QD
type: SiteQuality
SIO_000300: 1.413e1

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 529
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66294
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.35e0

DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -3.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 8.869999999999999e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510802235987309e-5
allele num: 66190
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

InbreedingCoeff
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SIO_000300: 7.1e-3

MQ
type: SiteQuality
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MQRankSum
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SIO_000300: -4.5e-2

QD
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ClippingRankSum
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SIO_000300: 1.51e-1

BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66020
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
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DP
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
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SIO_000300: -1.732e0

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514050387596899e-5
allele num: 66048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.612e1

FS
type: SiteQuality
SIO_000300: 1.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

DP
type: SiteQuality
SIO_000300: 2.380517e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 15

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.304347826086957e-3
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQ
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FS
type: SiteQuality
SIO_000300: 1.259e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 6
allele frequency: 9.047317470370036e-5
allele num: 66318
num of homozygotes: 0

FS
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DP
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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allele frequency: 0.0e0
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African
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allele num: 10372
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Other
type: Population
allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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FS
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MQ
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

East Asian
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allele num: 8622
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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Other
type: Population
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allele num: 900
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Latino
type: Population
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African
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allele frequency: 9.633911368015414e-5
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European (Non-Finnish)
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allele frequency: 4.507346975570179e-5
allele num: 66558
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
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ClippingRankSum
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 6.059871530723549e-5
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 5
allele frequency: 4.809542131589073e-4
allele num: 10396
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

InbreedingCoeff
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QD
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VQSLOD
type: SiteQuality
SIO_000300: 9.46e-1

ClippingRankSum
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MQ
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SIO_000300: 5.954e1

MQRankSum
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SIO_000300: -1.19e-1

FS
type: SiteQuality
SIO_000300: 6.899999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.656928e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

BaseQRankSum
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SIO_000300: 5.57e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 4
allele frequency: 2.424242424242424e-4
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-2

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
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BaseQRankSum
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QD
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DP
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SIO_000300: 2.656997e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

VQSLOD
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SIO_000300: 1.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.374e1

MQ
type: SiteQuality
SIO_000300: 5.984e1

InbreedingCoeff
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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SIO_000300: -1.76e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999490086685263e-5
allele num: 66678
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 8.637070305752289e-4
allele num: 11578
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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DP
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FS
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VQSLOD
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ClippingRankSum
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SIO_000300: 2.7e-2

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

Other
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QD
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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Latino
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East Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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ReadPosRankSum
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FS
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QD
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BaseQRankSum
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MQRankSum
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DP
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.822600243013366e-4
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 1.235e1

VQSLOD
type: SiteQuality
SIO_000300: 8.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.647025e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.188e0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.500075000750007e-5
allele num: 66666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.643591e6

FS
type: SiteQuality
SIO_000300: 2.2208e1

MQRankSum
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SIO_000300: -2.025e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

MQ
type: SiteQuality
SIO_000300: 5.541e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.959e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.502776027130038e-5
allele num: 66642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.998e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.607e1

VQSLOD
type: SiteQuality
SIO_000300: -1.238e0

FS
type: SiteQuality
SIO_000300: 2.5941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.51e-1

DP
type: SiteQuality
SIO_000300: 2.642282e6

MQRankSum
type: SiteQuality
SIO_000300: -2.203e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.32e-1

MQ
type: SiteQuality
SIO_000300: 5.48e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001110410852015e-5
allele num: 66642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

MQRankSum
type: SiteQuality
SIO_000300: 4.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.502e0

DP
type: SiteQuality
SIO_000300: 2.641373e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.44e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

DP
type: SiteQuality
SIO_000300: 2.64105e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.614e0

FS
type: SiteQuality
SIO_000300: 2.407e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.095330976472023e-5
allele num: 16406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

FS
type: SiteQuality
SIO_000300: 2.407e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.969e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.903e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.096817461285209e-5
allele num: 16402
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
type: Population
allele count: 0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.44057207009323e-5
allele num: 40974
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European (Finnish)
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allele count: 0
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.009e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 8.75e1
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GenotypeQuality
all individuals: 4320
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5494
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.609787508048938e-4
allele num: 6212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.881144140186459e-5
allele num: 40974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 3.009e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.59e-2

QD
type: SiteQuality
SIO_000300: 1.391e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.44013e5

GenotypeQuality
all individuals: 243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5496
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.258494840171155e-4
allele num: 7946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.44e0

QD
type: SiteQuality
SIO_000300: 1.322e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.56596e5

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.529051987767584e-4
allele num: 6540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.563e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

QD
type: SiteQuality
SIO_000300: 8.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.191e0

DP
type: SiteQuality
SIO_000300: 1.014107e6

GenotypeQuality
all individuals: 2008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.376344086021505e-4
allele num: 5580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6806
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

QD
type: SiteQuality
SIO_000300: 1.686e1

DP
type: SiteQuality
SIO_000300: 1.070347e6

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5551
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4353
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14048
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.558924093913836e-5
allele num: 43870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

DP
type: SiteQuality
SIO_000300: 1.082376e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.567e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.88e-1

QD
type: SiteQuality
SIO_000300: 1.79e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -7.530000000000001e-2

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
all individuals: 1051
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.674676278200507e-5
allele num: 44946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6776
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.633e0

QD
type: SiteQuality
SIO_000300: 1.364e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

DP
type: SiteQuality
SIO_000300: 1.117858e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4374
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variant carriers: 1

GenotypeQuality
all individuals: 541
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.178079804844049e-5
allele num: 45912
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.152193e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

QD
type: SiteQuality
SIO_000300: 2.459e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.117455138662316e-5
allele num: 49040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8948
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7200
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.681e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.129e0

QD
type: SiteQuality
SIO_000300: 1.325e1

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 1.229897e6

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1560
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GenotypeQuality
all individuals: 3900
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.05909764880322e-4
allele num: 9442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 3.168449696201588e-4
allele num: 53654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9280
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.325961e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.806e1

MQRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.597e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 4.125412541254125e-4
allele num: 7272
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Latino
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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MQ
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QD
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FS
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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South Asian
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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MQRankSum
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FS
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ClippingRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Latino
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allele frequency: 0.0e0
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DP
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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QD
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 57140
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South Asian
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ClippingRankSum
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VQSLOD
type: SiteQuality
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele count: 2
allele frequency: 2.359603586597452e-4
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

DP
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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FS
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 61122
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Other
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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Other
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VQSLOD
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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MQ
type: SiteQuality
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DP
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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DP
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4658
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 962
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36292
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.569760140650509e-5
allele num: 63704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: 2.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.075e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.388e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.521558e6

QD
type: SiteQuality
SIO_000300: 1.502e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

GenotypeQuality
all individuals: 627
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.733624454148471e-5
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

DP
type: SiteQuality
SIO_000300: 1.535958e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.619e1

GenotypeQuality
all individuals: 2576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4724
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2123
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3946
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5660
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.012048192771085e-4
allele num: 9960
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.259e0

MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

DP
type: SiteQuality
SIO_000300: 1.537887e6

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3906
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 806
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 1920
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
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variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554049853919314e-5
allele num: 64348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.206e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.539944e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.887e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.449999999999999e0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4734
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3671
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5687
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variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10786
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.328288707799767e-4
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.43e-1

DP
type: SiteQuality
SIO_000300: 1.548911e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.266e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.863e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.71e-1

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37054
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.077884881894614e-4
allele num: 64942
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.915e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 1.559606e6

QD
type: SiteQuality
SIO_000300: 1.493e1

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2605
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.210180623973728e-5
allele num: 12180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.823e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 1.564388e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

GenotypeQuality
all individuals: 2610
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38458
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524483200195134e-5
allele num: 65596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.074e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

DP
type: SiteQuality
SIO_000300: 1.580876e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.184e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.273e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.49e0

VQSLOD
type: SiteQuality
SIO_000300: 9.16e-1

GenotypeQuality
all individuals: 38626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4745
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 36
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GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
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GenotypeQuality
all individuals: 2165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523322060750084e-5
allele num: 65646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.582281e6

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

QD
type: SiteQuality
SIO_000300: 1.47e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.84e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.080535945829131e-3
allele num: 13882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

QD
type: SiteQuality
SIO_000300: 1.307e1

DP
type: SiteQuality
SIO_000300: 1.586285e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e0

FS
type: SiteQuality
SIO_000300: 2.285e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

GenotypeQuality
all individuals: 1030
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66042
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.805498843065197e-5
allele num: 14694
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.052999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.96e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.565e0

QD
type: SiteQuality
SIO_000300: 1.592e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 1.59716e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009781790820166e-5
allele num: 66450
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 1.847e0

QD
type: SiteQuality
SIO_000300: 1.093e1

DP
type: SiteQuality
SIO_000300: 1.613482e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.68e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.93e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.1e1

FS
type: SiteQuality
SIO_000300: 4.029e0

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.132e0

DP
type: SiteQuality
SIO_000300: 1.619859e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.412e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.904e0

DP
type: SiteQuality
SIO_000300: 1.620207e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.614301e6

FS
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.86e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.635e1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 5.997e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 1.613076e6

VQSLOD
type: SiteQuality
SIO_000300: -1.101e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503804625703029e-5
allele num: 66498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: 1.79e0

MQ
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.305170239596469e-5
allele num: 15860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503940323647958e-5
allele num: 66492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

DP
type: SiteQuality
SIO_000300: 1.60111e6

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4757
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15848
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 1.594e1

FS
type: SiteQuality
SIO_000300: 9.161e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.522999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.597619e6

GenotypeQuality
all individuals: 817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5771
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4758
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.406e0

MQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.425e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.698e0

DP
type: SiteQuality
SIO_000300: 1.594404e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.11e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37560
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4764
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1936
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.846153846153846e-4
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.396315722144045e-5
allele num: 15634
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.586226e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

MQRankSum
type: SiteQuality
SIO_000300: -2.45e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

QD
type: SiteQuality
SIO_000300: 1.459e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.56e-1

GenotypeQuality
all individuals: 2158
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2605
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15448
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.046e1

FS
type: SiteQuality
SIO_000300: 7.122e0

MQRankSum
type: SiteQuality
SIO_000300: -6.929e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.816e0

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.58142e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 2608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4768
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15432
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.580244e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

FS
type: SiteQuality
SIO_000300: 7.374e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.617e1

GenotypeQuality
all individuals: 607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4770
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2607
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509115054931788e-5
allele num: 66264
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.579012e6

VQSLOD
type: SiteQuality
SIO_000300: 2.64e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 4.43e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e0

QD
type: SiteQuality
SIO_000300: 1.574e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0